BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15860.2
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480432 jgi|Araly1|480432|fgenesh2_kg.3__3133__AT2G15860.1 2218 0.0
> Ahg480432 jgi|Araly1|480432|fgenesh2_kg.3__3133__AT2G15860.1
Length=1936
Score = 2218 bits (1201), Expect = 0.0
Identities = 1333/1398 (95%), Gaps = 4/1398 (0%)
Strand=Plus/Plus
Query 588 GGGTTTGAAGGTTTTCGATGATTCAGTTGAGAGTTTCACTTCTGGAGCTTGGCAAGCATT 647
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 531 GGGTTTGAAGGTTTTCGATGATTCAGTTGAGAGTTTCACTTCTGGTGCTTGGCAGGCATT 590
Query 648 TGGAAATGCGTTAAAAGGGGGCACAAGTTTGGTGCAAAAGCTTGAAAACAGTGTCCAGCA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGGAAATGCGTTAAAAGGGGGCACAAGTTTGGTGCAAAAGCTTGAAAACAGTGTCCAGCA 650
Query 708 AGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAGACAGGAAAAGC 767
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 651 AGGTTCTTCTCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTGGAGACAGGAAAAGC 710
Query 768 ATTAACTGCGAAAGGAATGCAAGTACTTGAATTTGTGGGCAAGGAAACTATGGATTTACT 827
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 711 ATTAACTGCTAAAGGAATGCAAGTACTTGAATTTGTGGGCAAGGAAACCATGGATTTACT 770
Query 828 GATTACAGAGACTGGTATTGGAGCTGAGAAGGATAGGGTAGACTTTAAGGATCAAGTACT 887
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||
Sbjct 771 GATTACAGAGACTGGTCTTGGAGCTGAGCAGAATAGGGTAGACTTTAAGGATCAAATACC 830
Query 888 TGAGGAGGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGGA 947
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGAGGAAGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGGA 890
Query 948 ATTGGAAGCATTGGCTAGCCACTATACTCTGTTGTTCAACAGGAGAAAGGGGAAATTGTC 1007
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATTGGAAGCATTGGCGAGCCACTATACTCTGTTGTTCAACAGGAGAAAGGGGAAATTGTC 950
Query 1008 ACCAGATCAAAAATCGCTGTATGACGGGAAGCTCAAACAAATCCAGCAACT-TTTCAGCT 1066
|||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 951 ACCAGATCAAAAATCGTTGTCTGACGGGAAGCTCAAACAAATCCAGCAACTGTTT-AGCT 1009
Query 1067 TTGCTGATGAAATGAGTGGAAGTAAAGCAGAGTCTGACAAAGGGAAGAAAATAGATATCA 1126
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1010 TCGCTGATGAAATGAGTGGAAGTAAAGCAGAGTCTGACAAAGGGAAGAAAATTGATATCA 1069
Query 1127 AAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTG 1186
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1070 AAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCGAGTGTCAGCAAAGCTG 1129
Query 1187 CTGATATGGCTACTGGGTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCC 1246
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1130 CTGATATGGCTGCTGGGTTCACAAATGCTTTAGCGGGACTAAACGTAAACGATATGATCC 1189
Query 1247 AGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATAGACTTTCAGAGA 1306
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AGCGGACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATAGACTTTCAGAGA 1249
Query 1307 TGTGCTGTTTTGCAGTCACACATCTGCTTATCCTCGGTAAGTCCATGATATCTCATGCCA 1366
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1250 TGTGCTGTTTTGCAGTCACTCATCTGCTTATTCTCGGTAAGTCCATGATATCTCATGCCA 1309
Query 1367 ACAAAGTTCAGGATGAAGACACTGAGGCATTGAAAATCGAGTGGGCAGAGGATCCTACAG 1426
||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
Sbjct 1310 ACAAAGTTCAGGAAGAAGACACTGAGGCGTTGAAAATCGAATGGCCAGAGGATCCTACGG 1369
Query 1427 AGAAAGCTAAGCTGATTAGAGGCAAGGCAGAAACAATGGCTGGATATGTTGAAGCAGTTT 1486
|||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 1370 AGAAAGCTAAGCTGATTAAAGGCAAGGCAGAATCGATGGCTGGATATGTTGAAGCAGTTT 1429
Query 1487 CCAATAGCTTTATAACAGGAATATCAGATGTATCTGAAACATACTCAGCTGCGATTAAAG 1546
|||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1430 CCAACAGTTTTATAACAGGTATATCAGACGTATCTGAAACATACTCGGCTGCGATTAAAG 1489
Query 1547 GAGTTGCAGCTGCTGATTCCAAAGATGATCTTCTGAAAACATCGACCATGCAGGAAAAAG 1606
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1490 GAGTTGCTGCTGCTGATTCCAAAGATGATCTTCTGAAAACATCAACCATGCAGGAAAAAG 1549
Query 1607 CAAGCACCTTCAACGATAGTCTTCGCTCTGACCAAACCACAGCTATCACAAAGATCCAGG 1666
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAGCACCTTCAACGATAGTCTTCGGTCTGACCAAACCACAGCTATCACAAAGATCCAGG 1609
Query 1667 AAGGGCTTCAGTACCTGTCCTATGTCGTGATTTCTACCTCGATGCCCTCTGCCTAATATA 1726
|||||||||||||||||||||| || ||||| |||||||| ||||||||| ||| |||||
Sbjct 1610 AAGGGCTTCAGTACCTGTCCTACGTTGTGATATCTACCTCAATGCCCTCTTCCTGATATA 1669
Query 1727 ATAAGAGTCAGATTGGTCTTATTTGTGGTTTACATGACTT-GGATTTGATTTAGTTTTCT 1785
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 1670 ATAAGAGTCAGATTGGTCTTGTTTGTGGTTTACATGACTCAGGATTCGATTTAGTTTTCT 1729
Query 1786 TTCTAGTTGTAGATATATCTCTTTCGCTAGCTGCTCTTATGGTAAGTCTTTCCCACTTGT 1845
|| || |||||||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct 1730 TTGTAATTGTAGATATATCTCTTTCGCTAGATGCTCTTATGGTAAGTTTTTCACACTTGT 1789
Query 1846 GCTCTACTTCTTTGTTGTCTGGATCTTGAAAGTTTTATTAAATCTAGGAACCAAAGATTG 1905
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1790 GCTCTGCTTCTCTGTTGTCTGGATCTTGAAAGTTTTATTAAATCTAGAAACCAAAGATTG 1849
Query 1906 AAAGCAGGGAAGCGATTAGTACTTT-ATCGAACTTTTGTTAGAAATATATTGTTGCTTCC 1964
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1850 AAAGCAGGGAAGAGATTAGTAATTTCATCGAACTTTTGTTAGAAATATATTGTTGCTTCC 1909
Query 1965 AGAGTTTTTACTTGGAAG 1982
| | ||||||||||||||
Sbjct 1910 AAATTTTTTACTTGGAAG 1927
Score = 728 bits (394), Expect = 0.0
Identities = 501/549 (91%), Gaps = 21/549 (4%)
Strand=Plus/Plus
Query 9 GCTAACTGATTTACAGTTTTCGATTCGAAAATCTTAATCTCCA-TTTCATTCCTTCGAC- 66
||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 1 GCTAACTGAATTACAGTTTTCGATTCGAAATTCTTAATC-CCATTTTCATTCCTTCGACA 59
Query 67 -ATCTTCACACAAACCCTAATCTCATTTCTGGTAAATCCGATTTTGG-GAAACTCTAATT 124
|||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 60 AATCTTCACAC-AATCCTAATCTCATTTCTGGTAAATCCGATTTTGGTGAAACCCTAATT 118
Query 125 TGATCTCGAGATCGCTAACAACGATGGAAGAAGACAAGCAAATGCACGAGGAGAAATCAT 184
||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 119 TGATCTCCAGATCGCTATCGACGATGGAGGAAGACAAGCAAATGCACGAGGAGAAATCAT 178
Query 185 CTCTGGTTAAAGAAGAACCGGTTCGTGGAGAAGAGCCCGAGATTGAGAAATTGACAGTGG 244
| | |||| || | ||||||||||| ||||||||||||||||||||||
Sbjct 179 CCCCGGTT-------AA-------G-GGAGAAGAGCCTGAGATTGAGAAATTGACAGTGG 223
Query 245 CAGATGTGGACGCGCCACCGAAGAGTACCGGTGGTTGGGGTTGGGGTTTCTCTGGCTTCT 304
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CAGATACCGATGCGCCGCCGAAGAGTACCGGTGGTTGGGGTTGGGGTTTCTCTGGCTTCT 283
Query 305 CTGTGCTTTCCGATCTCCAAAAAGCTGCGGAAGATATTTCTCGTAATGCTGCAGCGGTGG 364
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 284 CTGTACTTTCCGATCTTCAAAAAGCTGCGGAAGAGATTTCTCGTAATGCTGCAGCGGTGG 343
Query 365 CAGAGAAAGCAGCGAAAAGCATTGCAGAGATGGGAGAAGTGGATGAAGACTCTGAATCTT 424
| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 344 CGGAGAAAGCGGCGAAAAGTATTGCAGATATGGGAGAAGTGGATGAAGACTCTGAATCTT 403
Query 425 CTGCTAAGGAAGAAGAGAAAACTGAAGAAGCTGATACAGAGCAGGATAGTGATGATGAGA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CTGCTAAGGAAGAAGAGAAAACTGAAGAAGCTGATACAGAGCAGGATAGTGATGATGAGA 463
Query 485 ATGCGAAGTTAAAGAAGTCAGCTCTTGAGAGATTGGAGGGTGCAAGTGAAGAGTCACTTC 544
|||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 464 ATGCAAAGTTAAAGAAGTCAGCTCTTGCGAGATTGGAGGGGGCAAGTGAAGAGTCGCTTC 523
Query 545 TTAGCCAGG 553
|||||||||
Sbjct 524 TTAGCCAGG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5