BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G15890.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319530 jgi|Araly1|319530|fgenesh1_pm.C_scaffold_3002546 859 0.0
Ahg351872 jgi|Araly1|351872|fgenesh1_pg.C_scaffold_6002465 239 5e-62
> Ahg319530 jgi|Araly1|319530|fgenesh1_pm.C_scaffold_3002546
Length=594
Score = 859 bits (465), Expect = 0.0
Identities = 567/613 (92%), Gaps = 20/613 (3%)
Strand=Plus/Plus
Query 48 ATGATAAAATCAGTGACTCTTCGTTCGTTTCATCTCCCAATTGAGTTTAACGACACCAAA 107
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGATAAAATCAGTGACTCTTCGCTCGTTTCATCTCCCTATTGAGTTTAACGACACCAAA 60
Query 108 TTCGTCTCA-CGGCCTTGTTTCCTGGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 166
|||| | || || | || | || |||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGCCGCACCGTCGTT-TCCCCCCGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 119
Query 167 CAGAGACGTACCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 226
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGAGACGTCCCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 179
Query 227 TCCGCCACTTATTGAAAAAGCCGAATCCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 286
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TCCGCCACTAATTGAAAAAGCCGAAACCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 239
Query 287 TGATGACTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 346
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGATGATTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 299
Query 347 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGTGGTTTGAAATCGTTAATCGG 406
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 300 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGCGGTGTGAAATCGCTAATCGG 359
Query 407 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTACATGT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTA-A--- 415
Query 467 AGGAGAAGAATCAGATAGAGAGAAAGGAATGAATTTGCACATTCATATTCCTGATGGTTT 526
| | ||| |||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 416 A---------T-AGA--GAGA-AA-GGAATGAAATTGCATATTCATATTCCTGATGGTTT 461
Query 527 ACCAAAATCTGAACAAGAGTTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCAGCTTT 586
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 462 ACCAAAATCTGAACAAGAATTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCCGCTTT 521
Query 587 CACTAGATTGCTTAGAAGTAAAGGAACTATCCCTGCTTGGTTCTCTCACGCTCCTGACCA 646
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 522 CACTAGGTTGCTTAGAACTAAAGGAACTATCCCTGCTTGGTTCTCTCACGTTCCTGATCA 581
Query 647 CGAAACCGACTGA 659
|||||| ||||||
Sbjct 582 CGAAACTGACTGA 594
> Ahg351872 jgi|Araly1|351872|fgenesh1_pg.C_scaffold_6002465
Length=630
Score = 239 bits (129), Expect = 5e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 495 ATGAATTTGCACATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAGTTGGAGGAA 554
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAATTACATATTCATATTCCTGATGGTTTACCAAAATCTGAACAAGAATTGGAGGAA 60
Query 555 GAAGAGAAATCGAAAATGCCGGATTCAGCTTTCACTAGATTGCTTAGAAGTAAAGGAACT 614
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 61 GAAGAGAAATCGAAAATGCCGGATTCCGCTTTCACTAGATTGCTTAGAACTAAAGGAACT 120
Query 615 ATCCCTGCTTGGTTCTCTCACGCTCCTGACCACGAA 650
|||||||||||||||||||| ||||| || ||||||
Sbjct 121 ATCCCTGCTTGGTTCTCTCATGCTCCGGATCACGAA 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5