BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G15960.1

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480439 jgi|Araly1|480439|fgenesh2_kg.3__3140__AT2G15960.1         470    4e-132


> Ahg480439 jgi|Araly1|480439|fgenesh2_kg.3__3140__AT2G15960.1
Length=333

 Score =  470 bits (254),  Expect = 4e-132
 Identities = 312/338 (92%), Gaps = 11/338 (3%)
 Strand=Plus/Plus

Query  1    CTCTCTCGTTCATAATGAGATATTAAGATCAACAA-AAGGAAAGAATGGCAAAAGCTATG  59
            |||||||| ||||||| |||||||||||||||||| || | |||||||||||||||||||
Sbjct  1    CTCTCTCGCTCATAATTAGATATTAAGATCAACAAGAA-G-AAGAATGGCAAAAGCTATG  58

Query  60   GAGCTTTGGGTGGGAGAGATGAAGAAGATGAGTGAGAAGATAAACACTAGAAATCCATTG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  59   GAGCTTTGGGTGGGAGAGATGAAGAAGATGAGTGAGAAGATAAACACTAGAAACCCATTG  118

Query  120  ATGCAAAGGAAGAATTCAACATCTGTTGTGTCCAAACAACAACAAGGATCAGAAGAAGAA  179
            ||||||||||| ||  || | |||||||||||||||||||||||||||||||||||||||
Sbjct  119  ATGCAAAGGAACAAGACATCCTCTGTTGTGTCCAAACAACAACAAGGATCAGAAGAAGAA  178

Query  180  AGAGGACTTATTAACCAAAAGATTAGAGAGAAAAATGAAGCTGTAACTATGTCTGAGCTC  239
            ||||||||||  ||| ||||||  ||||||||| ||||||||| ||||||||||||| ||
Sbjct  179  AGAGGACTTA--AAC-AAAAGACAAGAGAGAAAGATGAAGCTGCAACTATGTCTGAGGTC  235

Query  240  ACTGTTTGTCTTCTCATGGACCGTTTTGTTCCTTGGTGATCTTTCCATACCCAACTACTT  299
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  236  ACTGTTTGTCTTCTCATGGACCGTTTTGTTCCTTGGTGATCTTTCAATACCCAACTACTT  295

Query  300  CTAGATC--TCTTC-T--TTGGTGATGTGTATATATAT  332
            |||||||  ||| | |  ||||||||||||||||||||
Sbjct  296  CTAGATCAATCTCCCTAATTGGTGATGTGTATATATAT  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13583389684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5