BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G16018.1

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912504 jgi|Araly1|912504|Al_scaffold_0001_2758                    254    1e-66
  Ahg908129 jgi|Araly1|908129|Al_scaffold_0002_1210                    206    3e-52


> Ahg912504 jgi|Araly1|912504|Al_scaffold_0001_2758
Length=1164

 Score =  254 bits (137),  Expect = 1e-66
 Identities = 181/202 (90%), Gaps = 4/202 (2%)
 Strand=Plus/Plus

Query  242  ATGACTTTCCTTTTTCTCTCGAATGCGAGCCACTCTCGTCGCTTACCGTCGTCTTCGGTC  301
            ||||||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct  1    ATGACTTCCCTTTTTCTTTCCAATGCGAGCCACTCTCGTTGCTTACCGTTGTCTTCGGTC  60

Query  302  GCCTTCCTCCTTCTGAGGCCACCTTGTGCACCACCACCAGAGCCTCCATCTCCGCCGACT  361
            |||||||||||||||||||| ||| ||||| |||| || ||||||||||||||||||| |
Sbjct  61   GCCTTCCTCCTTCTGAGGCCCCCTCGTGCAACACCGCCGGAGCCTCCATCTCCGCCGAAT  120

Query  362  CCACCGGAACCACCGGATCCACCAGA-TTCTCAGATCTGCTTCACTTTTGCTGATTCTTA  420
            |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| 
Sbjct  121  CCACCGGAACCACCGGATCCACCAGACTT-TCAGATCTGCTTCACTTTTGTTGATTCTTG  179

Query  421  TGCTCAG-TCGTTGAGCTCCTC  441
            | | ||| | |  |||||||||
Sbjct  180  TACCCAGCTGGC-GAGCTCCTC  200


> Ahg908129 jgi|Araly1|908129|Al_scaffold_0002_1210
Length=1206

 Score =  206 bits (111),  Expect = 3e-52
 Identities = 172/200 (86%), Gaps = 9/200 (5%)
 Strand=Plus/Plus

Query  242  ATGACTTTCCTTTTTCTCTCGAATGCGAGCCACTCTCGTCGCTTACCGTCGTCTTCGGTC  301
            ||||||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct  1    ATGACTTCCCTTTTTCTTTCCAATGCGAGCCACTCTCGTTGCTTACCGTTGTCTTCGGTC  60

Query  302  GCCTTCCTCCTTCTGAGGCCACCTTGTGCACCACCACCAGAGCCTCCATCTCCGCCGACT  361
            |||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||| |
Sbjct  61   GCCTTCCTCCTTCTGAGGCCCCCTCGTGCACCACCGCCGGAGCCTCCATCTCCGCCGAAT  120

Query  362  CCACCGGAACCACCGGATCCACCAGATTCTCAGATCTGCTTCACTTTTGCTGATTCTTAT  421
            |||||||| ||||| || |       || |||||||||||||||||||| |||||||| |
Sbjct  121  CCACCGGATCCACCAGA-C-------TT-TCAGATCTGCTTCACTTTTGTTGATTCTTGT  171

Query  422  GCTCAGTCGTTGAGCTCCTC  441
             | ||| ||  |||||||||
Sbjct  172  ACCCAGCCGGCGAGCTCCTC  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36712369071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5