BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16030.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492129 jgi|Araly1|492129|fgenesh2_kg.7__1562__AT2G16030.1 1336 0.0
> Ahg492129 jgi|Araly1|492129|fgenesh2_kg.7__1562__AT2G16030.1
Length=1102
Score = 1336 bits (723), Expect = 0.0
Identities = 913/1002 (91%), Gaps = 24/1002 (2%)
Strand=Plus/Plus
Query 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTGAAGAGAGTATCAATAGTGTTCTTAA 60
|||||||||||||||||||||||||||||||||| || ||||||||| | |||||| |||
Sbjct 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTAAACAGAGTATCAGTCGTGTTCATAA 60
Query 61 GCATCGGAACAGTATTAATGGTAATTATGATTCTCCAGACACCAAAAACTTGTATTTCTC 120
||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| |
Sbjct 61 GCATCGGAACAGTGTTAATGGTTATTATGATTCTCCAGACGCCGAAAACTTGTATTTCGC 120
Query 121 CAGAAGCTCCATCGAAACCTCATACGCATTTCCCGAGATCTACATGCGATTCATCGCCTC 180
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 121 CAGAAGCTCCATCGAAACCTCATACGCATTTTCCGAGATCCACCTGCGATTCATCGCCTC 180
Query 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTCCTCTGGAGCTTGGAAAT 240
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGACTCTGGTCCTCTAAAGCTTGGAAAT 240
Query 241 CTCGTCTATACTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAA 300
| ||||| | ||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGCGTCTCTCCTCCTTCTCAAATTACTTCCTCCGATTTCGCGATCTCGGATTCCTTCAAA 300
Query 301 ATCACACCAAAGCTCTCTGTCTCTCCGCCGGAGCAGGCCATGCTCTGATGGCTCTTTCTC 360
| ||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||
Sbjct 301 AGCACACCAAAGCTCTCTGTCTCTCCGCCGGCGCAGGCCACACTCCGATGGCGCTTTCTA 360
Query 361 AGATCGGATTATCTGATGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420
| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 ATATCGGATTAGCTGACGTTACCGCCGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420
Query 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480
Query 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCAGTTTGTGGAGGAGATGGAGAGGACGGTGAGAC 540
||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||
Sbjct 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAAATGGAGAGGACTGTGCGAC 540
Query 541 GTGGCGGATTTTGTGTGGTTTCGGTTGATGAATGTGGTGGAGATGATGTAAGAGACATTG 600
| || || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GCGGTGGGTTTTGTGTGGTTGCGGTTGATGAATGTGGTGGAGATGATGTTAGAGACATTG 600
Query 601 CTAGGCTTTTTCATAACTCCAAGGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 601 CTAGGCTTTTTCATAAATCGAAAGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660
Query 661 AAAAGACTAGTATACTATTCAAAGTTCAAGACTCTCCTACCTGAGGTGTTTTA-TTT--- 716
||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 661 AAAGGACTAGTATACTATTCAAAGTTCAAGACTCTACTACATGAGGTGTTTTAGTTTGTA 720
Query 717 --CT-CT-TTT-GATT---T--AT--A--GGCCCTTTCCGGATTCTCAGAAAACTGCTTC 762
|| || ||| |||| | || | || |||||| |||||||||||||||||||||
Sbjct 721 TTCTTCTCTTTTGATTGCGTTGATTTATAGGTCCTTTCTGGATTCTCAGAAAACTGCTTC 780
Query 763 AATATTCATAGAGTGGAGCTAGATTTGTTTCTGTTGAAATTCACTTACATGTTTGA-AAA 821
||| |||||||||||||||||||||||| ||||||||| ||||||| |||||| || |||
Sbjct 781 AATGTTCATAGAGTGGAGCTAGATTTGTGTCTGTTGAATTTCACTTCCATGTTAGACAAA 840
Query 822 GCAGGAGATTT-AACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTC 880
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 -CAGGAG-TTTCAACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTT 898
Query 881 TGGATCCTAAAGCAATGTTTTGTTGAGGGAAGCTGCGATGTTTGTTGCGAGTTCAAGATC 940
| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 899 TCGATGCTAAACCAATGTTT-GTTGAGGGAAGCTGCAATGTTTGTTGCGAGTTCAAGATC 957
Query 941 CAGAACAAAAGCTTTCTACAGGTTAATATCtt-tttttttGG 981
|| ||||||| |||||||||||| |||||||| |||||||||
Sbjct 958 CACAACAAAACCTTTCTACAGGTGAATATCTTCTTTTTTTGG 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5