BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16030.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg492129 jgi|Araly1|492129|fgenesh2_kg.7__1562__AT2G16030.1 1336 0.0 > Ahg492129 jgi|Araly1|492129|fgenesh2_kg.7__1562__AT2G16030.1 Length=1102 Score = 1336 bits (723), Expect = 0.0 Identities = 913/1002 (91%), Gaps = 24/1002 (2%) Strand=Plus/Plus Query 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTGAAGAGAGTATCAATAGTGTTCTTAA 60 |||||||||||||||||||||||||||||||||| || ||||||||| | |||||| ||| Sbjct 1 CGGCGACGATGGAGAGAAACGTCGAGAAGATGCTAAACAGAGTATCAGTCGTGTTCATAA 60 Query 61 GCATCGGAACAGTATTAATGGTAATTATGATTCTCCAGACACCAAAAACTTGTATTTCTC 120 ||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| | Sbjct 61 GCATCGGAACAGTGTTAATGGTTATTATGATTCTCCAGACGCCGAAAACTTGTATTTCGC 120 Query 121 CAGAAGCTCCATCGAAACCTCATACGCATTTCCCGAGATCTACATGCGATTCATCGCCTC 180 ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 121 CAGAAGCTCCATCGAAACCTCATACGCATTTTCCGAGATCCACCTGCGATTCATCGCCTC 180 Query 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTCCTCTGGAGCTTGGAAAT 240 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 181 GTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGACTCTGGTCCTCTAAAGCTTGGAAAT 240 Query 241 CTCGTCTATACTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAA 300 | ||||| | ||||||||| | |||||||||||||||||||||||||||||| |||||| Sbjct 241 CGCGTCTCTCCTCCTTCTCAAATTACTTCCTCCGATTTCGCGATCTCGGATTCCTTCAAA 300 Query 301 ATCACACCAAAGCTCTCTGTCTCTCCGCCGGAGCAGGCCATGCTCTGATGGCTCTTTCTC 360 | ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||| Sbjct 301 AGCACACCAAAGCTCTCTGTCTCTCCGCCGGCGCAGGCCACACTCCGATGGCGCTTTCTA 360 Query 361 AGATCGGATTATCTGATGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420 | ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 361 ATATCGGATTAGCTGACGTTACCGCCGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAA 420 Query 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCAC 480 Query 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCAGTTTGTGGAGGAGATGGAGAGGACGGTGAGAC 540 ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| ||| Sbjct 481 ATCTAGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAAATGGAGAGGACTGTGCGAC 540 Query 541 GTGGCGGATTTTGTGTGGTTTCGGTTGATGAATGTGGTGGAGATGATGTAAGAGACATTG 600 | || || |||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 541 GCGGTGGGTTTTGTGTGGTTGCGGTTGATGAATGTGGTGGAGATGATGTTAGAGACATTG 600 Query 601 CTAGGCTTTTTCATAACTCCAAGGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660 |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 601 CTAGGCTTTTTCATAAATCGAAAGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCA 660 Query 661 AAAAGACTAGTATACTATTCAAAGTTCAAGACTCTCCTACCTGAGGTGTTTTA-TTT--- 716 ||| ||||||||||||||||||||||||||||||| |||| |||||||||||| ||| Sbjct 661 AAAGGACTAGTATACTATTCAAAGTTCAAGACTCTACTACATGAGGTGTTTTAGTTTGTA 720 Query 717 --CT-CT-TTT-GATT---T--AT--A--GGCCCTTTCCGGATTCTCAGAAAACTGCTTC 762 || || ||| |||| | || | || |||||| ||||||||||||||||||||| Sbjct 721 TTCTTCTCTTTTGATTGCGTTGATTTATAGGTCCTTTCTGGATTCTCAGAAAACTGCTTC 780 Query 763 AATATTCATAGAGTGGAGCTAGATTTGTTTCTGTTGAAATTCACTTACATGTTTGA-AAA 821 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||| || ||| Sbjct 781 AATGTTCATAGAGTGGAGCTAGATTTGTGTCTGTTGAATTTCACTTCCATGTTAGACAAA 840 Query 822 GCAGGAGATTT-AACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTC 880 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 -CAGGAG-TTTCAACAGATTATGTGGTAACATTGTTCAAAGACCATGACCATATTTGTTT 898 Query 881 TGGATCCTAAAGCAATGTTTTGTTGAGGGAAGCTGCGATGTTTGTTGCGAGTTCAAGATC 940 | ||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 899 TCGATGCTAAACCAATGTTT-GTTGAGGGAAGCTGCAATGTTTGTTGCGAGTTCAAGATC 957 Query 941 CAGAACAAAAGCTTTCTACAGGTTAATATCtt-tttttttGG 981 || ||||||| |||||||||||| |||||||| ||||||||| Sbjct 958 CACAACAAAACCTTTCTACAGGTGAATATCTTCTTTTTTTGG 999 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5