BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16090.1
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480784 jgi|Araly1|480784|fgenesh2_kg.3__3485__AT2G16090.1 3022 0.0
Ahg328304 jgi|Araly1|328304|fgenesh1_pm.C_scaffold_7000531 1375 0.0
> Ahg480784 jgi|Araly1|480784|fgenesh2_kg.3__3485__AT2G16090.1
Length=2312
Score = 3022 bits (1636), Expect = 0.0
Identities = 2147/2377 (90%), Gaps = 102/2377 (4%)
Strand=Plus/Plus
Query 7 CTCTTTCTCTTCTCCTCCGGTTGATTCAGTCCTTTTAACACTCCTCTTTTGATCTCGCCG 66
|||| ||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 1 CTCTCTCTCTGCTCCTCCGGTTGATTCAGTCC-TTTAACACTTCTC-TTTGATCTCGCCG 58
Query 67 GC-AAATAT-CATCCCACATCCTTCATGTCTCAAAATCTCCGTCATCGTTCTCTTCCTTC 124
|| |||||| || | ||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 59 GCAAAATATAAAT-CAACATCCTTCATATCTCTAGTTCTCCGTCATCGTTCTCTTCCTTC 117
Query 125 GTTATTACTCTCGTACTTTATCACCTCCGTCGTTCTATAATACTCTCTTCCGTCAATCAT 184
||| |||||||||||||| |||||||||||||||| | ||| |
Sbjct 118 GTTGTTACTCTCGTACTTAATCACCTCCGTCGTTC--T-ATA---------G-------- 157
Query 185 ATCATTTGTC-GACAATTTCATTCTG-ATCAGTTTAAAAATTGATCCATGGATGATAATT 242
|||||||||| | |||||||| |||| || | |||||||| ||||| |||||||||||||
Sbjct 158 ATCATTTGTCTG-CAATTTCAATCTGAAT-AATTTAAAAACTGATCAATGGATGATAATT 215
Query 243 TAAGCGGCGAGGAAGAAGATTACTATTACTCCTCCGATCAGGAATCTCTCAACGGGATTG 302
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 216 TAAGCGGCGAGGAAGACGGTTACTATTACTCCTCCGATCAGGAATCTCTCAACGGCCTTG 275
Query 303 ATAATGATGAATC-CGTTTCG-ATACCTGTTTCTTCCCGATCAAATACTGTCAAGGTTAT 360
|||||||| |||| | ||| | | |||| |||||||| || |||||||||||||||||||
Sbjct 276 ATAATGATCAATCTC-TTTTGCA-ACCTCTTTCTTCCAGAACAAATACTGTCAAGGTTAT 333
Query 361 TACGAAGGAATCACTTTTGGCTGCACAGAGGGAGGATTTGCGGAGAGTGATGGAATTGTT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 334 TACGAAGGAATCACTTTTGGCAGCACAGAGGGAGGATTTGCGGAGAGTGATGGAATTGTT 393
Query 421 ATCGGTTAAGGAGCACCATGCTCGGACTCTTCTTATACATTACCGATGGGATGTGGAGAA 480
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 394 ATCGGTTAAGGAGCACCATGCTCGGACTCTTCTTATATATTATCGATGGGATGTTGAGAA 453
Query 481 GTTGTTTGCTGTTCTTGTTGAGAAAGGGAAAGATAGCTTGTTTTCTGGTGCTGGTGTTAC 540
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 454 GTTGTTTGCTGTGCTTGTTGAGAAAGGGAAGGATAGTTTGTTTTCTGGTGCTGGTCTTA- 512
Query 541 A-CTTCTTGAAAACCAAAGTTGTGATTCTTCCGTTTCTGGTTC-TTCTTCGA-TGATGAG 597
| |||||||||| ||| ||||||| |||| ||||| | | |||||||| || ||||
Sbjct 513 AGGTTCTTGAAAATCAACCTTGTGATGCTTCTGTTTC--G--CGTTCTTCGATTG-TGAG 567
Query 598 TTGTGATATCTGCGTAGAGGATGTACCGGGTTATCAGCTGACAAGGATGGACTGTGGCCA 657
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 568 TTGTGATATCTGTATAGAGGATGTACCGGGTTATCAGATGACAAGGATGGATTGTGGCCA 627
Query 658 TAGCTTTTGCAATAAC-TGTTGGACTGGGCATTTTACTGTAAAGATAAATGAAGGTCAGA 716
||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 628 TAGCTTTTGCAAT-ACTTGTTGGGCTGGGCATTTTACTGTAAAGATAAATGAAGGTCAGA 686
Query 717 GCAAAAGGATTATATGCATGGCTCATAAGTGTAATGCTATTTGTGATGAAGATGTTGTCA 776
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 687 GCAAAAGGATTATATGTATGGCTCATAAATGTAATGCTATTTGCGATGAAGATGTAGTCA 746
Query 777 GGGCTCTAGTTAGTAAAAGCCAACCAGATTTAGCTGAGAAGTTTGATCGTTTTCTTCTTG 836
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGACTTTAGTTAGTAAAAGCCAACCAGATTTAGCTGAGAAGTTTGATCGTTTTCTTCTTG 806
Query 837 AGTCGTATATCGAAGATAACAAAATGGTGAAGTGGTGTCCGAGTACTCCTCATTGTGGGA 896
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 807 AGTCGTATATCGAAGATAACAAAATGGTGAAGTGGTGTCCGAGCACTCCGCATTGTGGGA 866
Query 897 ATGCCATACGTGTTGAGGATGACGAGCTCTGTGAGGTTGAATGCTCTTGTGGTTTGCAGT 956
|||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 867 ATGCAATACGTGTTGAGGATGATGAGCTTTGTGAGGTTGAATGCTCATGTGGTTTGCAGT 926
Query 957 TCTGTTTCAGTTGTTCATCTCAAGCTCACTCCCCTTGCTCTTGTGTGATGTGGGAACTAT 1016
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 927 TCTGTTTCAGTTGTTCATCTCAAGCCCACTCCCCTTGCTCTTGTGTCATGTGGGAGCTGT 986
Query 1017 GGAGAAAGAAGTGCTTTGATGAGTCCGAGACTGTTAATTGGATAACTGTTCACACAAAGC 1076
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 987 GGAGAAAGAAGTGCTATGATGAGTCCGAGACAGTTAACTGGATAACTGTTCACACAAAGC 1046
Query 1077 CGTGTCCCAAATGTCACAAGCCTGTTGAAAAGAATGGTGGATGCAATCTCGTGACTTGTC 1136
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1047 CGTGTCCCAAATGTAACAAGCCCGTTGAAAAGAATGGTGGATGCAATCTCGTGACTTGTC 1106
Query 1137 TTTGTCGACAATCTTTTTGTTGGTTGTGTGGTGAAGCTACTGGAAGGGACCACACTTGGG 1196
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1107 TTTGTCGACAATCTTTTTGTTGGTTGTGTGGTGGAGCTACTGGAAGGGACCACACTTGGT 1166
Query 1197 CTAGAATCTCGGGTCATAGTTGTGGTCGGTTCCAAGAAGATAAAGAGAAACAAATGGAGA 1256
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 CTAGAATCTCAGGTCATAGTTGTGGTCGGTTCCAAGAAGATAAAGAGAAACAAATGGAGA 1226
Query 1257 GAGCGAAAAGGGATCTC-AAGCGGTATATGCATTATCATAACCGATACAAAGCACATA-T 1314
|||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
Sbjct 1227 GAGCAAAAAGGGATCTCGAA-CGGTATATGCATTATCATAACCGGTACAAAGCACATACT 1285
Query 1315 CGACTCCTCCAAGCTAGAGGCTAAGCTTAGTAATAATATTAGTAAAAAGGTGTC-TATTT 1373
||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||| | |||
Sbjct 1286 -GACTCCTCCAAGCTAGAGGCTGAGCTTAGTTATAGTATTCGTAAAAAAGTGTCGT-TTT 1343
Query 1374 CAGAAAAGAGGGAGTTACAACTTAAAGACTTCAGCTGGGCTACCAATGGACTCCATCGGT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CAGAAAAGAGGGAGTTACAACTTAAAGACTTCAGCTGGGCTACCAATGGACTCCATCGGT 1403
Query 1434 TATTTAGATCAAGACGAGTTCTTTCATATTCATACCCTTTCGCATTTTACATGTTTGGAG 1493
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TAGTTAGATCAAGACGAGTTATTTCATATTCATACCCTTTCGCATTTTACATGTTTGGAG 1463
Query 1494 ATGAGCTGTTTAAAGATGAGATGAGCTCTGAGGAAAGAGAAATAAAACAAAATCTGTTTG 1553
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1464 ATGAACTGTTTAAAGATGAGATGAGCTCTGAAGAGAGAGAAATAAAACAAAATCTGTTTG 1523
Query 1554 AGGATCAGCAGCAGCAGCTTGAGGCTAATGTTGAGAAACTTTCTAAGTTCTTGGAGGAAC 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AGGATCAGCAGCAGCAGCTTGAGGCTAATGTTGAGAAACTTTCTAAGTTCTTGGAGGAAC 1583
Query 1614 CTTTTGATCAATTTGCTGATGATAAGGTCATGCAGATAAGGATTCAAGTCATCAATTTGT 1673
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 CCTTTGATCAATTTGCTGATGATAAGGTCATGCAGATAAGGATTCAAGTCATCAATTTGT 1643
Query 1674 CAGTTGCGGTCGATACACTCTGCGAAAATATGTATGAATGCATTGAGAATGACTTGTTGG 1733
|||||||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1644 CAGTTGCGGTTGATACCCTCTGCAAAAAAATGTATGAATGCATTGAGAATGAATTGTTGG 1703
Query 1734 GTTCTCTGCAACTTGGCATCCACAACATTACTCCATACAGATCAAACGGCATAGAACGAG 1793
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1704 GTTCTCTGCAACTTGGCATCCACAACATTACTCCATATAGATCAAACGGCATAGAACGAG 1763
Query 1794 CATCTGATTTTTATAGTTCCCAGAATTCCAAGGAAGCTGTTGGT---------CAGTCTT 1844
||||||| ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 1764 CATCTGACTTTTATAGTTCTCAGAATTCAAAGGAAGCTGTTGGTGAAATATGTCAGTCTT 1823
Query 1845 CGGATTGTGG-A--------TGGACGTCCAGGCTCGATCAAGCTTTGG-AGTCAGGGAAG 1894
|||||||||| | |||||||||||||||||||||||||||| | || || ||
Sbjct 1824 CGGATTGTGGTACAAGCGGATGGACGTCCAGGCTCGATCAAGCTTTGGGA-TCTGGAAAT 1882
Query 1895 TCGGAAGACACAAGTTGCTCTTCCGGGAAGCGTGCTAGAATAGACGAAAGTTACAGAAAC 1954
|||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 1883 TCGGAAGACACAAGTTGCTCTTCCAATAAGCGTGCCAGAATAGACGGAAGTTACAGAAAC 1942
Query 1955 AGCCAAACCACCTTACTAGATTTAAACTTGCCAGCGGAAGCCATTGAGCGGAAATGAACA 2014
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1943 AGCCAAACCACCTTACTAGATTTAAACTTGCCAGCAGAAGCCATTGAGCGGAAATGAACA 2002
Query 2015 CTTATCCTTCTTCACCTCCCAATAACACCCTTTTTGTCCAAATAAAGTGTGTTACCCGGA 2074
|||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2003 CTTATCCTACTTCTCCAACCAATAACACCCTTTTTGTCCAAATAAAGCGTGTTACCCGGA 2062
Query 2075 TATTTATAGCTCTAAACCCAATCCCCTCTGCTTAATTTGT----CAGTGACCTTACCTAA 2130
|| ||||||||| ||||| ||| ||||||||| |||||| || |||||||||||||
Sbjct 2063 AATGTATAGCTCTTAACCCTATCACCTCTGCTTGATTTGTTTTTCACTGACCTTACCTAA 2122
Query 2131 CCCTCTTCAGTTCTGAAAGAAGGGGTCAAGCATCGTTACTTACAAAATTTCAATCAGTTT 2190
| |||||| |||||||| | || | | || |||||||||||| |||||||||
Sbjct 2123 CAATCTTCACTTCTGAAACA-----TC--G--T--TT-CTTACAAAATTTTAATCAGTTT 2170
Query 2191 CGGAGTTTACATAGGATAATGGTTATAGACTTATAGTGGATCATATTTGAAGCTGCCTAT 2250
||||||||| | ||| | | |||| || | | ||| |||||||||| ||||
Sbjct 2171 CGGAGTTTA--T-GGAC--T--T-ATAGTGG-AT--T--A-CATCTTTGAAGCTGTCTAT 2216
Query 2251 GAACTCAGGCTTCTCTCAGTGCCTCGAGGTGTAAATTTTTAACTAAACGTAGGTGGATCG 2310
||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||
Sbjct 2217 GAACTCAGGCTTCTCTCAGTGGCTCAAGGTGTAAATTGTTAACTCAACGTAGGTGGATCG 2276
Query 2311 T-ACCTAATTCATGGATATGAATCTCTTGTACATATG 2346
| || ||||||| |||||||||| |||| ||||||||
Sbjct 2277 TTAC-TAATTCAAGGATATGAATTTCTTATACATATG 2312
> Ahg328304 jgi|Araly1|328304|fgenesh1_pm.C_scaffold_7000531
Length=1794
Score = 1375 bits (744), Expect = 0.0
Identities = 1347/1630 (83%), Gaps = 73/1630 (4%)
Strand=Plus/Plus
Query 230 ATGGATGATAATTTAAGCGGCGAGGAAGAAGATTACTATTACTCCTCCGATCAGGAATCT 289
||||||||| |||| |||| |||||||| |||| |||||||||||||||||| || |||
Sbjct 1 ATGGATGATTATTTTAGCGCCGAGGAAGGGGATTGCTATTACTCCTCCGATCAAGAGTCT 60
Query 290 CTCAACGGGATTGATAATGATGAATCCG--TTTCGATACCTGTTTCTTCC---CGATCAA 344
| |||| ||||||||||| || || | || | || ||||| || ||| |||||
Sbjct 61 TTGGACGGAATTGATAATGAAGAGTCTGAATTGC-AT-CCTGTGTCGTCCAAAAAATCAA 118
Query 345 ATACTGTCAAGGTTATTACGA-AGGAATCACTTTTGGCTGCACAGAGGGAGGATTTGCGG 403
| || || |||| || || | ||||||| ||| |||| |||||||| || |||||||
Sbjct 119 ACAC--TC-AGGTCATCAC-ACAGGAATCGCTTCTGGCAGCACAGAGAGAAGATTTGCTA 174
Query 404 AGAGTGATGGAATTGTTATCGGTTAAGGAGCACCATGCTCGGACTCTTCTTATACATTAC 463
|| || ||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 175 AGGGTCATGGATTTGTTATCGATTAAGGAGCACCATGCGCGGACTCTTCTTATTCATTAC 234
Query 464 CGA-TGGGATGTGGAGAAGTTGTTTGCTGT-TCTTGTTGAGAAAGGGAAAGATAGCTTGT 521
| | |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 235 C-AGTGGGATGTGGAGAAGTTGTTTGCTGTGT-TTGTTGAGAAAGGAAAAGATAGCTTGT 292
Query 522 TTTCTGGTGCTGGTGTTACACTTCTT-GAAAACCAA-AGTTGTGATTCTTCCGTTTCTGG 579
||||||| |||||||| || | | || || ||| | | | | |||||| ||||| |
Sbjct 293 TTTCTGGGGCTGGTGTCAC-CGTGTTCGACTGTCAATA-TGGCAACTCTTCCTTTTCTCG 350
Query 580 TTCTTCTTCG-ATGATGAGTTGTGATATCTGCGTAGAGGATGTACCGGGTTATCAGCTGA 638
| |||||| | ||||||||||||| | ||| ||||||||||||| ||| ||||| |||
Sbjct 351 --C-TCTTCGCA-GATGAGTTGTGATGTTTGCATAGAGGATGTACCTGGTGATCAGATGA 406
Query 639 CAAGGATGGACTGTGGCCATAGCTTTTGCAATAACTGTTGGACTGG-GCATTTTACTGTA 697
|||| ||||||||||||||| ||| ||||||||| |||||||| || ||||||||||||
Sbjct 407 CAAGAATGGACTGTGGCCATTGCTATTGCAATAATTGTTGGAC-GGAGCATTTTACTGTG 465
Query 698 AAGATAAATGAAGGTCAGAGCAAAAGGATTATATGCATGGCTCAT-AAGTGTAATGCTAT 756
|||||||||||||||||||||||||||||| |||||||||||| || || ||||||||
Sbjct 466 CAGATAAATGAAGGTCAGAGCAAAAGGATTAGATGCATGGCTCACCAA-TGCAATGCTAT 524
Query 757 TTGTGATGAAGATGTTGTCAGGGCTCTAGTTAGTAAAA-GCCAACCAGATTTAGCTGAGA 815
||||||||||||| |||||||| ||| || ||||||| || || ||| |||||||||
Sbjct 525 TTGTGATGAAGATATTGTCAGGAATCTTGTCAGTAAAAAGCGT-CCTGATCTAGCTGAGA 583
Query 816 AGTTTGATCGTTTTCTTCTTGAGTCGTATATCGAAGATAACAAAATGGTGAAGTGGTGTC 875
||||||||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 584 AGTTTGATCGTTTCCTTCTTGAGTCTTACATCGAAGACAACAAAATGGTCAAGTGGTGTC 643
Query 876 CGAGTACTCCTCATTGTGGGAATGCCATACGTGTTGAGGATGACGAGCTCTGTGAGGTTG 935
| || ||||| |||||||||||||| ||||| | |||||||||| || | || || ||||
Sbjct 644 CAAGCACTCCCCATTGTGGGAATGCTATACGAGCTGAGGATGACAAGTTGTGCGAAGTTG 703
Query 936 AATGCTCTTGTGGT-TTGCAGTTCTGTTTCAGTTGT-TCATCTCAAGCTCACTCCCCTTG 993
|||| || |||||| || |||||||||||||||||| | | |||||| |||||||||||
Sbjct 704 AATGTTCCTGTGGTCTT-CAGTTCTGTTTCAGTTGTCTG-TGTCAAGCCCACTCCCCTTG 761
Query 994 CTCTTGTGTGATGTGGGAACTATGGAGAAAGAAGTG-CTTTGATGAGTCCGAGACTGTTA 1052
||||||| |||||||||| |||||||||||||||| | |||||||| |||||| |||
Sbjct 762 CTCTTGTTTGATGTGGGAGTTATGGAGAAAGAAGTGTCGA-GATGAGTCTGAGACTATTA 820
Query 1053 ATTGGATAACTGTTCACACAAAGCCGTGTCCCAAATGTCACAAGCCTGTTGAAAAGAATG 1112
|||||||||| || |||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 821 ATTGGATAACCGTCCACACAAAGCTGTGTCCCAAATGTTACAAACCTGTGGAAAAGAATG 880
Query 1113 GTGGATGCAATCTCGTGACTTGTCTTTGTCGACAATCTTTTTGTTGGTTGTGTGGTGAAG 1172
|||||||||||||||| | ||| ||||| | || | |||||||||| | ||||||| ||
Sbjct 881 GTGGATGCAATCTCGTAAGGTGTATTTGTGGGCAGTGTTTTTGTTGGCTATGTGGTGGAG 940
Query 1173 CTACTGGAAGGGACCACACTTG--GGCTAGAATCTCGGGTCATAGTTGTGGTCGGTTCCA 1230
|||||||||| || ||||||| || || ||| | ||||| ||||||||||||| |||
Sbjct 941 CTACTGGAAGTGATCACACTTATAGG--AGTATCGCTGGTCACAGTTGTGGTCGGTACCA 998
Query 1231 AGAAGATAAAGAGAAACAAATGGAGAGAGCGAAAAGGGATCTCA-AGC-GGTATATGCAT 1288
||| || |||||||| || ||||| |||||||| |||||| | | | | |||||| ||||
Sbjct 999 AGATGACAAAGAGAAGCAGATGGAAAGAGCGAAGAGGGATTT-AGA-CAGGTATACGCAT 1056
Query 1289 TATCATAACCGATACAAAGCACATATCG-ACTCCTCCAAGCTAGAGGCTAAGCTTAGTAA 1347
|||||| ||||||||||||| |||| || | || || |||||||| | ||| ||||| |
Sbjct 1057 TATCATCACCGATACAAAGCGCATA-CGGATTCATCAAAGCTAGAAGATAAACTTAGGGA 1115
Query 1348 TAATATT-AGTAA-AAAGGTGTCTATTTCAGAAAAGAGGGAGTTACAA-CTTAAAGACTT 1404
| ||| | | | |||| |||| | ||||||||||||||||| || |||||||||||
Sbjct 1116 CACTATCCA-TGAGAAAG-TGTCGAAATCAGAAAAGAGGGAGTTG-AAGCTTAAAGACTT 1172
Query 1405 CAGCTGGG-CTACCAATGGACTCCATCGGTTATTTAGATCAAGACGAGTTCTTTCATATT 1463
||| |||| | |||||||||||| | |||||||| |||||||| || |||||||||||||
Sbjct 1173 CAGTTGGGTC-ACCAATGGACTCGACCGGTTATTCAGATCAAGGCGGGTTCTTTCATATT 1231
Query 1464 CATACCCTTTCGCATTTTACATGTTTGGAGATGAGCTGTTTAAAGATGAGATGAGCTCTG 1523
| || |||| |||| |||||||||||| || |||||||| ||||||||||||| | |||
Sbjct 1232 CGTATGCTTTTGCATATTACATGTTTGGGGAAGAGCTGTTCAAAGATGAGATGACCCCTG 1291
Query 1524 AGGAAAGAGAAATAAAACAA-AATCTGTTTGAGGATCAGCAGCAGCAGCTTGAG-GCTAA 1581
|||| ||||| || || || ||| ||||||||||||||||||| || ||||| | |||
Sbjct 1292 AGGAGAGAGAGATGAAG-AAGAATTTGTTTGAGGATCAGCAGCAACAACTTGAAAG-TAA 1349
Query 1582 TGTTGAGAAACTTTCTAAGTTC-TTGGAGGAACCTTTTGATCAATTT-GCTGATGATAAG 1639
||| ||||||||||| || || ||| |||| || |||||| ||||| | |||||||||
Sbjct 1350 TGTGGAGAAACTTTCCCAGCTCCTTG-AGGAGCCCTTTGATGAATTTAG-TGATGATAAA 1407
Query 1640 GTCATG-CAGATAAGGATTCA-AGTCATCAATTTGTCAGTTGCGGTCGATACACTCTGCG 1697
|| ||| || ||||||||||| | ||||||||||||| |||||||||||||| ||||||
Sbjct 1408 GTTATGGCA-ATAAGGATTCAGA-TCATCAATTTGTCTGTTGCGGTCGATACCCTCTGCA 1465
Query 1698 A-AAATATGTATGAATGCATTGAGAATGACTTGTTGGGTTCTCTGCAACTTGGCATCCAC 1756
| ||| ||||| || ||||||||||||||||| | || || || |||||||||||||||
Sbjct 1466 AGAAA-ATGTACGAGTGCATTGAGAATGACTTACTCGGATCCCTCCAACTTGGCATCCAC 1524
Query 1757 AACAT-TACTCCATACAGATCAAACGGCATAGAACGAGCATCTGATTTTTATA-GTTCCC 1814
||||| | | || ||||||||||| || || |||| |||| || | |||||| || ||
Sbjct 1525 AACATCT-CACCTTACAGATCAAAGGGAATTGAACAAGCAGCTCAGTTTTATGCGT-CCT 1582
Query 1815 AGAATTCCAA 1824
|||||||||
Sbjct 1583 GGAATTCCAA 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95911236910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5