BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16120.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343514 jgi|Araly1|343514|fgenesh1_pg.C_scaffold_3003277 2266 0.0
Ahg906745 jgi|Araly1|906745|Al_scaffold_0003_3873 2183 0.0
> Ahg343514 jgi|Araly1|343514|fgenesh1_pg.C_scaffold_3003277
Length=1536
Score = 2266 bits (1227), Expect = 0.0
Identities = 1436/1539 (93%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCCTCGGGAGTTGAACAAGGTGTTGTGATTGCGGAGTCAGAGCCACCGAGGGGG 60
|||| ||||| |||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGAGTTCCTTGGGAGTAGAACAAGGTGTTGTGATTGCAGATTCCGAGCCACCGAGGGGG 60
Query 61 AATAGAAGCCGATATGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AATAGAAGCCGATATGCTTTTGCTTGTGCAATTTTAGCCTCCATGACTTCTATCATCCTT 120
Query 121 GGTTACGACATTGGAGTGATGAGTGGAGCTTCAATTTTCATAAAAGACGATTTGAAACTG 180
|||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 GGTTACGATATTGGAGTAATGAGTGGAGCTGCGATTTTCATAAAAGACGATTTGAAACTG 180
Query 181 TCTGATGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGGTCGGTTCC 240
|| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 181 TCGGATGTACAACTTGAGATTCTTATGGGAATTTTAAACATCTACTCTCTGATTGGTTCC 240
Query 241 GGCGCAGCTGGTAGAACTTCTGATTGGCTCGGAAGACGATAT-ACAATAGTGTTGGCAGG 299
|| || || |||||||||||||||||| | |||||||| | | || ||||||||||||||
Sbjct 241 GGTGCGGCCGGTAGAACTTCTGATTGGATTGGAAGACGGT-TCACCATAGTGTTGGCAGG 299
Query 300 AGCCTTCTTCTTTTGCGGAGCCCTACTAATGGGCTTTGCCACAAACTACCCTTTCATAAT 359
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 300 AGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTACCCTTTCATTAT 359
Query 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTTGGTTATGCTATGATGATTGCGCCTGTTTA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTA 419
Query 420 CACCGCTGAAGTCGCTCCCGCCTCTTCCCGAGGCTTCCTTACCTCTTTCCCTGAGATTTT 479
|||||| ||||||||||| |||||||| || |||||||| | ||||||||||||||| ||
Sbjct 420 CACCGCAGAAGTCGCTCCTGCCTCTTCTCGCGGCTTCCTCAGCTCTTTCCCTGAGATATT 479
Query 480 TATCAATATTGGTATACTTTTGGGATACGTATCCAATTACTTCTTCTCCAAGCTTCCCGA 539
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 480 TATCAATATTGGTATACTTTTGGGATACGTATCAAATTACTTTTTCTCCAAGCTTCCCGA 539
Query 540 GCACCTCGGATGGAGGTTCATGTTAGGTGTAGGAGCGGTTCCCTCGGTGTTCCTAGCCAT 599
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 540 GCACCTTGGATGGAGGTTCATGTTAGGGGTTGGAGCGGTTCCCTCGGTGTTCCTAGCCAT 599
Query 600 TGGAGTGTTGGCAATGCCGGAGTCTCCTCGGTGGCTCGTCCTTCAGGGTCGTCTCGGGGA 659
||||||||||||||||||||||| || | ||||||||||| || ||||||||||| ||
Sbjct 600 CGGAGTGTTGGCAATGCCGGAGTCCCCAAGATGGCTCGTCCTCCAAGGTCGTCTCGGTGA 659
Query 660 TGCTTTTAAAGTCCTTGACAAAACCTCCAACACCAAAGAAGAAGCTATCTCTAGGCTCGA 719
||||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||||||||
Sbjct 660 TGCTTTTAAAGTCCTTGACAAAACCTCAAACACTAAAGAAGAAGCCATCACGAGGCTCGA 719
Query 720 TGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTCC 779
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGACATCAAACGCGCGGCTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTGCC 779
Query 780 GAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGTC 839
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGTC 839
Query 840 CGTTCGACACATCCTCATAGCATGCCTTGGTATTCATTTCGCCCAGCAAGCCTCTGGAAT 899
|||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 840 CGTTCGACACATTCTCATAGCATGCCTTGGCATCCATTTCGCCCAGCAAGCCTCCGGAAT 899
Query 900 TGATGCGGTTGTGCTTTACTCTCCGACAATCTTCTCAAAGGCTGGACTGAAGTCCAAGAA 959
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 900 TGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAA 959
Query 960 TGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGG 1019
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGATCAGCTCTTGGCAACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGG 1019
Query 1020 GACTTGTGTGGTGGATCGGTTCGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAAT 1079
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1020 AACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAAT 1079
Query 1080 GTTTCTTTCCTTGACCGCACTTGGAACTAGTCTCACGGTGATCAACAGGAACCCCGGG-C 1138
|||||||||||||||||| || ||||||||||| || |||||| ||||||| |||||| |
Sbjct 1080 GTTTCTTTCCTTGACCGCTCTCGGAACTAGTCTTACCGTGATCGACAGGAA-CCCGGGCC 1138
Query 1139 AAAC-ACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTGGCAACA 1197
|||| | |||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1139 AAACGA-TCAAGTGGGCCATAGGGCTAGCCGTTACGACAGTGATGACGTTTGTGGCAACT 1197
Query 1198 TTCTCAATAGGTGCAGGCCCCGTGACGTGGGTCTACTGCTCAGAGATATTCCCTGTGAGG 1257
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 TTCTCAATAGGTGCAGGCCCGGTGACGTGGGTTTACTGCTCAGAGATATTCCCTGTGAGG 1257
Query 1258 CTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATT 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATA 1317
Query 1318 GGAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGCGGTGCGTTCCTTCTATTC 1377
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 1318 GGAATGACATTCCTATCTCTCTCTAAAGGTCTCACCATTGGTGGTGCGTTCCTTCTCTTC 1377
Query 1378 GCCGGAGTTGCTGCCGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGT 1437
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCCGGAGTTGCAGCTGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGT 1437
Query 1438 ATACCTCTAGAGGAGATGGAGACTCTCTTCGGGAGCTACACCGCAAACAAGAAGAATAAT 1497
|| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1438 ATGCCTCTAGAGGAGATGGAGAGTCTCTTCGGGAGCTACACCGCAAACAAAAAGAAGAAT 1497
Query 1498 TCTATGAGCAAAGACAATGAAGTTGTGGATGGACAATGA 1536
||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1498 TCTGTGAGCAAAGACAATGAAATTGTGGATGAACAATGA 1536
> Ahg906745 jgi|Araly1|906745|Al_scaffold_0003_3873
Length=1536
Score = 2183 bits (1182), Expect = 0.0
Identities = 1421/1539 (92%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCCTCGGGAGTTGAACAAGGTGTTG-TGATTGCGGAGTCAGAGCCACCGAGGGG 59
|||| |||||| |||| |||| |||||||| || ||||||| || ||||| || || ||
Sbjct 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTG-TTGCGGATTCCGAGCCGCCTAGAGG 59
Query 60 GAATAGAAGCCGATATGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAATAGAAGTCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
Query 120 TGGTTACGACATTGGAGTGATGAGTGGAGCTTCAATTTTCATAAAAGACGATTTGAAACT 179
|||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TGGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAACT 179
Query 180 GTCTGATGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGGTCGGTTC 239
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GTCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGATCGGTTC 239
Query 240 CGGCGCAGCTGGTAGAACTTCTGATTGGCTCGGAAGACGATATACAATAGTGTTGGCAGG 299
||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 240 AGGCGCGGCTGGTAGAACTTCTGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGG 299
Query 300 AGCCTTCTTCTTTTGCGGAGCCCTACTAATGGGCTTTGCCACAAACTACCCTTTCATAAT 359
|||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 300 AGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTATCCTTTCATTAT 359
Query 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTTGGTTATGCTATGATGATTGCGCCTGTTTA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTA 419
Query 420 CACCGCTGAAGTCGCTCCCGCCTCTTCCCGAGGCTTCCTTACCTCTTTCCCTGAGATTTT 479
|||||||||||||||||| ||||| || || || ||||||| ||||||||||||||| ||
Sbjct 420 CACCGCTGAAGTCGCTCCTGCCTCCTCTCGTGGTTTCCTTAGCTCTTTCCCTGAGATATT 479
Query 480 TATCAATATTGGTATACTTTTGGGATACGTATCCAATTACTTCTTCTCCAAGCTTCCCGA 539
|||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 480 TATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGA 539
Query 540 GCACCTCGGATGGAGGTTCATGTTAGGTG-TAGGAGCGGTTCCCTCGGTGTTCCTAGCCA 598
||||||||||||||||||||||||||| | | |||||||| ||||| ||||| |||||||
Sbjct 540 GCACCTCGGATGGAGGTTCATGTTAGG-GATTGGAGCGGTGCCCTCAGTGTTTCTAGCCA 598
Query 599 TTGGAGTGTTGGCAATGCCGGAGTCTCCTCGGTGGCTCGTCCTTCAGGGTCGTCTCGGGG 658
||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||||||||
Sbjct 599 TTGGAGTTTTGGCAATGCCTGAGTCTCCACGGTGGCTCGTCATCCAGGGTCGTCTCGGGG 658
Query 659 ATGCTTTTAAAGTCCTTGACAAAACCTCCAACACCAAAGAAGAAGCTATCTCTAGGCTCG 718
| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 659 ACGCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCA 718
Query 719 ATGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTC 778
|||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 719 ATGACATCAAACGCGCGGCCGGAATCCCCGATGATATGACCGACGATGTTATAGTCGTTC 778
Query 779 CGAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGT 838
| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CCAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGT 838
Query 839 CCGTTCGACACATCCTCATAGCATGCCTTGGTATTCATTTCGCCCAGCAAGCCTCTGGAA 898
|||| |||||||| || |||||||||||||| || || |||||||| |||||||| ||||
Sbjct 839 CCGTCCGACACATTCTTATAGCATGCCTTGGCATCCACTTCGCCCAACAAGCCTCCGGAA 898
Query 899 TTGATGCGGTTGTGCTTTACTCTCCGACAATCTTCTCAAAGGCTGGACTGAAGTCCAAGA 958
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 899 TTGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
Query 959 ATGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGACCAGCTCTTAGCTACAGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
Query 1019 GGACTTGTGTGGTGGATCGGTTCGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAA 1078
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAA 1078
Query 1079 TGTTTCTTTCCTTGACCGCACTTGGAACTAGTCTCACGGTGATCAACAGGAACCCCGGGC 1138
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 TGTTTATTTCCTTGACCTTGCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGC 1138
Query 1139 AAACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTGGCAACAT 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 AAACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACAGTGATGACTTTTGTGGCAACAT 1198
Query 1199 TCTCAATAGGTGCAGGCCCCGTGACGTGGGTCTACTGCTCAGAGATATTCCCTGTGAGGC 1258
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TCTCAATAGGTGCAGGCCCAGTGACGTGGGTCTACTGCTCAGAGATATTCCCCGTGAGGC 1258
Query 1259 TAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTATTG 1318
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1259 TAAGAGCTCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAG 1318
Query 1319 GAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGCGGTGCGTTCCTTCTATTCG 1378
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1319 GAATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGTGGTGCCTTCCTTCTCTTCG 1378
Query 1379 CCGGAGTTGCTGCCGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTA 1438
||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCGGAGTAGCGGCTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTG 1438
Query 1439 TACCTCTAGAGGAGATGGAGACTCTCTTCGGGAGCTACACCGCAAACAAGAAGAATAAT- 1497
| ||| |||| || ||||||| |||||| |||||||||||||||||||| ||||| |||
Sbjct 1439 TGCCTTTAGAAGAAATGGAGAGTCTCTTTGGGAGCTACACCGCAAACAAAAAGAACAATG 1498
Query 1498 TCTATGAGCAAAGACAATGAAGTTGTGGATGGACAATGA 1536
| ||||| ||||| || |||| || |||| |||||||
Sbjct 1499 T-TATGACCAAAGGGAAACAAGTCGTTGATGAACAATGA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5