BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16130.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906745 jgi|Araly1|906745|Al_scaffold_0003_3873 2410 0.0
Ahg343514 jgi|Araly1|343514|fgenesh1_pg.C_scaffold_3003277 2067 0.0
> Ahg906745 jgi|Araly1|906745|Al_scaffold_0003_3873
Length=1536
Score = 2410 bits (1305), Expect = 0.0
Identities = 1460/1537 (95%), Gaps = 2/1537 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTGTTGCCGAGTCCGAGCCGCCAAGAGGG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTGTTGCGGATTCCGAGCCGCCTAGAGGG 60
Query 61 AATAGAAGCCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATAGAAGTCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCTT 120
Query 121 GGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAGCTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAACTG 180
Query 181 TCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAATATCTATTCTCTGATCGGTTCA 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 TCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAACATCTACTCTCTGATCGGTTCA 240
Query 241 GGAGCAGCTGGAAGAACTTCCGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGGA 300
|| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGCGGCTGGTAGAACTTCTGATTGGATCGGAAGACGATATACCATAGTGTTGGCAGGA 300
Query 301 TTCTTCTTCTTTTGTGGAGCCCTACTAATGGGTTTTGCCACTAACTATCCTTTCATTATG 360
|||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 301 GCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTATCCTTTCATTATG 360
Query 361 GTCGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTACGCTATGATGATTGCGCCTGTTTAT 420
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTTAC 420
Query 421 ACCACGGAAGTCGCTCCAGCCTCTTCTCGAGGCTTCCTTAGCTCTTTCCCTGAGATATTT 480
||| | ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 421 ACCGCTGAAGTCGCTCCTGCCTCCTCTCGTGGTTTCCTTAGCTCTTTCCCTGAGATATTT 480
Query 481 ATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAGAG 540
Query 541 CACATTGGATGGAGGTTCATGTTAGGTATTGGAGCTGTGCCCTCAGTGTTTCTAGCCATT 600
||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 541 CACCTCGGATGGAGGTTCATGTTAGGGATTGGAGCGGTGCCCTCAGTGTTTCTAGCCATT 600
Query 601 GGAGTGTTGGCAATGCCCGAGTCTCCACGGTGGCTCGTCATGCAGGGTCGTCTAGGGGAC 660
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 601 GGAGTTTTGGCAATGCCTGAGTCTCCACGGTGGCTCGTCATCCAGGGTCGTCTCGGGGAC 660
Query 661 GCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCAAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCAAT 720
Query 721 GACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTCCG 780
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 GACATCAAACGCGCGGCCGGAATCCCCGATGATATGACCGACGATGTTATAGTCGTTCCC 780
Query 781 AATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGTCC 840
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGTCC 840
Query 841 GTTCGACACATCCTCATAGCATGCCTTGGTATCCATTTCTCCCAGCAAGCCTCCGGAATT 900
|| |||||||| || |||||||||||||| ||||| ||| |||| |||||||||||||||
Sbjct 841 GTCCGACACATTCTTATAGCATGCCTTGGCATCCACTTCGCCCAACAAGCCTCCGGAATT 900
Query 901 GATGCTGTCGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAAT 960
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGAAT 960
Query 961 GACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTAGTAGGA 1020
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GACCAGCTCTTAGCTACAGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAGGA 1020
Query 1021 ACTTGTTTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAATG 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 ACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGCGGAATG 1080
Query 1081 tttttttCCTTGACCGCCCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGCAA 1140
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTATTTCCTTGACCTTGCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGCAA 1140
Query 1141 ACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTCGCAACATTC 1200
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1141 ACACTCAAGTGGGCTATAGGGCTCGCCGTTACGACAGTGATGACTTTTGTGGCAACATTC 1200
Query 1201 TCATTAGGTGCAGGCCCCGTGACGTGGGTCTAC-GCCTCAGAGATATTCCCCGTGAGGCT 1259
||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 1201 TCAATAGGTGCAGGCCCAGTGACGTGGGTCTACTGC-TCAGAGATATTCCCCGTGAGGCT 1259
Query 1260 AAGAGCGCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAGG 1319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGAGCTCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTATAGG 1319
Query 1320 AATGACATTCCTATCTCTTTCTAAGGGTCTCACCATCGGTGGTGCATTCCTTCTCTTCGC 1379
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1320 AATGACATTCCTATCTCTTTCTAAAGGTCTCACCATCGGTGGTGCCTTCCTTCTCTTCGC 1379
Query 1380 CGGAGTTGCGGTTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTGT 1439
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGGAGTAGCGGCTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTGGTGT 1439
Query 1440 GCCTTTAGAAGAAATAGAGAGTCTCTTCGGGAGCTACAGCGCAAACAAAAAGAACAATGT 1499
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1440 GCCTTTAGAAGAAATGGAGAGTCTCTTTGGGAGCTACACCGCAAACAAAAAGAACAATGT 1499
Query 1500 TATGAGCAAAGGGAAACAAGTAGTTGATGAACAATGA 1536
||||| ||||||||||||||| |||||||||||||||
Sbjct 1500 TATGACCAAAGGGAAACAAGTCGTTGATGAACAATGA 1536
> Ahg343514 jgi|Araly1|343514|fgenesh1_pg.C_scaffold_3003277
Length=1536
Score = 2067 bits (1119), Expect = 0.0
Identities = 1403/1542 (91%), Gaps = 12/1542 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCCTCAGGAGAAGAACGAGGTGTTGTTG-TTGCCGAGTCCGAGCCGCCAAGAGG 59
|||||||||| |||| ||||| |||||||| || |||| || |||||||| || || ||
Sbjct 1 ATGAGTTCCTTGGGAGTAGAACAAGGTGTTG-TGATTGCAGATTCCGAGCCACCGAGGGG 59
Query 60 GAATAGAAGCCGATTTGCTTTTGCTTGTGCAATCTTAGCCTCCATGACTTCTATCATCCT 119
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 GAATAGAAGCCGATATGCTTTTGCTTGTGCAATTTTAGCCTCCATGACTTCTATCATCCT 119
Query 120 TGGTTATGATATTGGAGTGATGAGTGGAGCTGCAATTTTCATAAAAGACGATTTGAAGCT 179
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 120 TGGTTACGATATTGGAGTAATGAGTGGAGCTGCGATTTTCATAAAAGACGATTTGAAACT 179
Query 180 GTCGGACGTACAACTTGAGATTCTTATGGGAATTCTAAATATCTATTCTCTGATCGGTTC 239
|||||| ||||||||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 180 GTCGGATGTACAACTTGAGATTCTTATGGGAATTTTAAACATCTACTCTCTGATTGGTTC 239
Query 240 AGGAGCAGCTGGAAGAACTTCCGATTGGATCGGAAGACGATAT-ACCATAGTGTTGGCAG 298
|| || || || |||||||| |||||||| |||||||| | | ||||||||||||||||
Sbjct 240 CGGTGCGGCCGGTAGAACTTCTGATTGGATTGGAAGACGGT-TCACCATAGTGTTGGCAG 298
Query 299 GATTCTTCTTCTTTTGTGGAGCCCTACTAATGGGTTTTGCCACTAACTATCCTTTCATTA 358
|| |||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||
Sbjct 299 GAGCCTTCTTCTTTTGCGGTGCCCTTCTCATGGGTTTTGCCACAAACTACCCTTTCATTA 358
Query 359 TGGTCGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTACGCTATGATGATTGCGCCTGTTT 418
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 TGGTTGGCCGTTTTGTAGCCGGTATCGGTGTCGGTTATGCTATGATGATTGCGCCTGTTT 418
Query 419 ATACCACGGAAGTCGCTCCAGCCTCTTCTCGAGGCTTCCTTAGCTCTTTCCCTGAGATAT 478
| ||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 419 ACACCGCAGAAGTCGCTCCTGCCTCTTCTCGCGGCTTCCTCAGCTCTTTCCCTGAGATAT 478
Query 479 TTATCAACATTGGTATACTATTGGGATACGTATCCAATTACTTCTTCGCCAAGCTTCCAG 538
||||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||| |
Sbjct 479 TTATCAATATTGGTATACTTTTGGGATACGTATCAAATTACTTTTTCTCCAAGCTTCCCG 538
Query 539 AGCACATTGGATGGAGGTTCATGTTAGGTATTGGAGCTGTGCCCTCAGTGTTTCTAGCCA 598
||||| |||||||||||||||||||||| ||||||| || ||||| ||||| |||||||
Sbjct 539 AGCACCTTGGATGGAGGTTCATGTTAGGGGTTGGAGCGGTTCCCTCGGTGTTCCTAGCCA 598
Query 599 TTGGAGTGTTGGCAATGCCCGAGTCTCCACGGTGGCTCGTCATGCAGGGTCGTCTAGGGG 658
| ||||||||||||||||| ||||| ||| | ||||||||| | || |||||||| || |
Sbjct 599 TCGGAGTGTTGGCAATGCCGGAGTCCCCAAGATGGCTCGTCCTCCAAGGTCGTCTCGGTG 658
Query 659 ACGCTTTTAAAGTCCTTGACAAAACCTCAAACACCAAAGAAGAAGCCATCTCAAGGCTCA 718
| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 659 ATGCTTTTAAAGTCCTTGACAAAACCTCAAACACTAAAGAAGAAGCCATCACGAGGCTCG 718
Query 719 ATGACATCAAACGCGCAGTTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTTC 778
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 ATGACATCAAACGCGCGGCTGGAATCCCCGATGATATGACAGACGATGTTATAGTCGTGC 778
Query 779 CGAATAAAAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTTCGACCAACCCCGT 838
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CGAACAAGAAGAGCGCTGGAAAAGGCGTGTGGAAGGACCTTCTCGTCCGACCAACCCCGT 838
Query 839 CCGTTCGACACATCCTCATAGCATGCCTTGGTATCCATTTCTCCCAGCAAGCCTCCGGAA 898
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 839 CCGTTCGACACATTCTCATAGCATGCCTTGGCATCCATTTCGCCCAGCAAGCCTCCGGAA 898
Query 899 TTGATGCTGTCGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGATGCGGTTGTGCTTTACTCTCCGACCATCTTCTCAAGGGCTGGACTGAAGTCCAAGA 958
Query 959 ATGACCAGCTCTTGGCTACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTAGTAG 1018
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 ATGATCAGCTCTTGGCAACGGTCGCTGTCGGAGTTGTCAAGACTCTCTTCATCGTGGTAG 1018
Query 1019 GAACTTGTTTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAA 1078
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAACTTGTGTGGTGGACCGGTTTGGACGTCGTGCCTTGTTGCTTACGAGTATGGGTGGAA 1078
Query 1079 TGtttttttCCTTGACCGCCCTTGGAACTAGTCTCACGGTGATCGACAGGAACCCCGGGC 1138
||||| ||||||||||||| || ||||||||||| || ||||||||||||||||| ||||
Sbjct 1079 TGTTTCTTTCCTTGACCGCTCTCGGAACTAGTCTTACCGTGATCGACAGGAACCC-GGGC 1137
Query 1139 -AAAC-ACTCAAGTGGGCTATAGGGCTCGCCGTTACGACGGTGATGACTTTTGTCGCAAC 1196
|||| | |||||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1138 CAAACGA-TCAAGTGGGCCATAGGGCTAGCCGTTACGACAGTGATGACGTTTGTGGCAAC 1196
Query 1197 ATTCTCATTAGGTGCAGGCCCCGTGACGTGGGTCTAC-GCCTCAGAGATATTCCCCGTGA 1255
|||||| ||||||||||||| ||||||||||| ||| || |||||||||||||| ||||
Sbjct 1197 TTTCTCAATAGGTGCAGGCCCGGTGACGTGGGTTTACTGC-TCAGAGATATTCCCTGTGA 1255
Query 1256 GGCTAAGAGCGCAAGGAGCAAGTTTGGGAGTGATGTTGAATAGACTAATGAGTGGTATTA 1315
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1256 GGCTAAGAGCTCAAGGGGCAAGTTTAGGAGTGATGTTGAATAGACTAATGAGTGGTATTA 1315
Query 1316 TAGGAATGACATTCCTATCTCTTTCTAAGGGTCTCACCATCGGTGGTGCATTCCTTCTCT 1375
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1316 TAGGAATGACATTCCTATCTCTCTCTAAAGGTCTCACCATTGGTGGTGCGTTCCTTCTCT 1375
Query 1376 TCGCCGGAGTTGCGGTTGCCGCGTGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTG 1435
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCGCCGGAGTTGCAGCTGCCGCATGGGTCTTCTTCTTCACTTTCCTCCCGGAGACACGTG 1435
Query 1436 GTGTGCCTTTAGAAGAAATAGAGAGTCTCTTCGGGAGCTACAGCGCAAACAAAAAGAACA 1495
|| ||||| |||| || || |||||||||||||||||||||| ||||||||||||||| |
Sbjct 1436 GTATGCCTCTAGAGGAGATGGAGAGTCTCTTCGGGAGCTACACCGCAAACAAAAAGAAGA 1495
Query 1496 ATGT-TATGAGCAAAGGGAAACAAGTAGTTGATGAACAATGA 1536
|| | | ||||||||| || || | || ||||||||||||
Sbjct 1496 AT-TCTGTGAGCAAAGACAATGAAATTGTGGATGAACAATGA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5