BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16140.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938429 jgi|Araly1|938429|scaffold_502620.1 154 3e-36
Ahg914464 jgi|Araly1|914464|Al_scaffold_0001_4718 150 4e-35
Ahg901561 jgi|Araly1|901561|Al_scaffold_0004_2211 150 4e-35
Ahg898994 jgi|Araly1|898994|Al_scaffold_0005_2960 150 4e-35
Ahg897431 jgi|Araly1|897431|Al_scaffold_0005_1397 150 4e-35
Ahg938428 jgi|Araly1|938428|scaffold_502619.1 148 1e-34
Ahg904826 jgi|Araly1|904826|Al_scaffold_0003_1954 100 4e-20
> Ahg938429 jgi|Araly1|938429|scaffold_502620.1
Length=811
Score = 154 bits (83), Expect = 3e-36
Identities = 102/111 (92%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59
||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 126 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCC 184
Query 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110
|||||||||||||||||| ||||| | ||||||||||| |||||| |||||
Sbjct 185 AGCTTTGTTGGGAAGCTGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCC 235
> Ahg914464 jgi|Araly1|914464|Al_scaffold_0001_4718
Length=222
Score = 150 bits (81), Expect = 4e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60
Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930
|||||||||| | | ||| ||||||||| ||||||||| ||| |||||
Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108
> Ahg901561 jgi|Araly1|901561|Al_scaffold_0004_2211
Length=222
Score = 150 bits (81), Expect = 4e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60
Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930
|||||||||| | | ||| ||||||||| ||||||||| ||| |||||
Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108
> Ahg898994 jgi|Araly1|898994|Al_scaffold_0005_2960
Length=222
Score = 150 bits (81), Expect = 4e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60
Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930
|||||||||| | | ||| ||||||||| ||||||||| ||| |||||
Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108
> Ahg897431 jgi|Araly1|897431|Al_scaffold_0005_1397
Length=222
Score = 150 bits (81), Expect = 4e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 823 ATGGATCCATATCCATATAGTCATGGATCAGGTTTTGTGAACCTCTTAACTAGTCAACAA 882
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATTCATATCCATATAGTCATGGATCAGGCTTTGTGAACCTCTTAACTAGTCAACAA 60
Query 883 GAGGTTCACACTTTGGAAACCAATCCGTGTGATGATGTTCCTATCTTT 930
|||||||||| | | ||| ||||||||| ||||||||| ||| |||||
Sbjct 61 GAGGTTCACAATCTAGAAGCCAATCCGTATGATGATGTCCCTGTCTTT 108
> Ahg938428 jgi|Araly1|938428|scaffold_502619.1
Length=824
Score = 148 bits (80), Expect = 1e-34
Identities = 101/111 (91%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59
||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 127 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCC 185
Query 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110
|||||||||||||||||||||||| | ||||||| ||| |||||| |||||
Sbjct 186 AGCTTTGTTGGGAAGCTGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCC 236
> Ahg904826 jgi|Araly1|904826|Al_scaffold_0003_1954
Length=228
Score = 100 bits (54), Expect = 4e-20
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 856 TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACACTTTGGAAACCAATCCGTGTGAT 915
||||||||||||||||||||||||||||||||||||| | | ||| ||||||||| ||||
Sbjct 109 TTTGTGAACCTCTTAACTAGTCAACAAGAGGTTCACAATCTAGAAGCCAATCCGTATGAT 168
Query 916 GATGTTCCTATCTTT 930
||||| ||| |||||
Sbjct 169 GATGTCCCTGTCTTT 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5