BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16190.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931789 jgi|Araly1|931789|scaffold_304246.1 817 0.0
> Ahg931789 jgi|Araly1|931789|scaffold_304246.1
Length=1006
Score = 817 bits (442), Expect = 0.0
Identities = 723/850 (85%), Gaps = 54/850 (6%)
Strand=Plus/Plus
Query 104 CAA-GGCGAGGTCATGCAACTCTTGACATCAGATCCTCCACAAAATACCCAACCCTCTCC 162
||| ||| || ||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 165 CAAGGGC-AGTTCATGCAACTCTTGATATCAGATTCTCCACAAAATATCCAACCCTCTCC 223
Query 163 TCCTCAA-C-CA--A-ATGACA----T----GACTTCTTTTGCCAACGGAACAAACCA-T 208
| ||||| | || | |||||| | |||||| |||||||| ||||| || |
Sbjct 224 TTCTCAACCACATCAGATGACACTTTTGGAAGACTTC-ACGGCCAACGGCACAAA-CACT 281
Query 209 GTGATTGTTCCCACGCAGGCTCTTGAGCAAGCTGTACCGCCCCCAAACGTCT---CAGT- 264
|||||||||||||||| || | || ||| || | || ||||| ||||
Sbjct 282 TTGATTGTTCCCACGCA--ATC-T------GC---ACCTCCACTAAGCGTCTCAGCAGTG 329
Query 265 GAGGACCCCATTGCCTTATCAACCTTCAGAAGAAGTCCTTCCCCCTCCTCAACTGAACCA 324
| || |||||| || | |||||||||||||| || ||| || ||||||| || |||||||
Sbjct 330 GCGG-CCCCATGGCGTGATCAACCTTCAGAAAAACTCCCTCACCCTCCTGAAGTGAACCA 388
Query 325 GGTTGCCACCGTGGCCTTGGCAACTCCCCGCAGAGGTCGTCCACCAGGAGGACAAGCACG 384
|||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 389 GGTTGCAACCGTGGCCTCGGAAACTCGCCGCAGAGGTCGTCCACCAGGAGGACAAGCACG 448
Query 385 TCGTAACTCAAAAAGACCGGTGGCTGGGGTTGAAAGAAACGTAGG-TGACAGGGAGA--T 441
||||| |||| |||| ||| |||| |||||| || ||||| || | ||||||||| |
Sbjct 449 TCGTATTTCAACAAGAGCGGCAGCTGCGGTTGATAGCAACGT-GGATAACAGGGAGATGT 507
Query 442 C---G----TACCACCGTATCCATGGGCCACCAAAAAGCCAGGCAAAATCCAGTCTTTCA 494
| | ||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 508 CGGAGATCATACCACCGTATCCATGGGCCACCAAAAAGCCAGGCGAAATCTAGTCCATCA 567
Query 495 GAGACTTGTCTTCCAACAATATAAACGTCATCTCTGGACAAGTCCACTGCAAAACTTGCG 554
|||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 568 GAGACTTGTCTTCCAAGAATTTAAACGTGATCTCTGGACTAGTCCACTGCAAAACTTGCG 627
Query 555 ATAGGACCGACACGGTT-GAATATAATCTGGA-GGAGAAATTTTCGGAATTGTATGGATA 612
||| ||| ||| ||| || |||||||| || ||||||||||||||||||||||| |||
Sbjct 628 ATAAGACTTACA-AGTTGGACTATAATCT-GATGGAGAAATTTTCGGAATTGTATGAATA 685
Query 613 CATTAAGGTGAACAAGGAGGAGATGCGCCATCGAGCCCCGGGTAGT-TGGTCAACCCCGA 671
|||||||||||||||||||| |||||| || ||||||||||||| | |||||||||||||
Sbjct 686 CATTAAGGTGAACAAGGAGGTGATGCGTCAACGAGCCCCGGGTA-TATGGTCAACCCCGA 744
Query 672 AACTGATTCCGTGTAGG-ACATGCAAGAGTGAGATGAAGCCTGTGATGTCCGAGAGGAAG 730
||||||| ||||| || |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 745 AACTGATACCGTG-CGGCACATGCAAGAGTGAGATGAAGCCTGTAATGTCTGAAAGGAAG 803
Query 731 GAAGAAATTAACTGGTTGTTTCTTCTGTTAGGGCAAATGTTGGGATGCTGTACTTTGGAC 790
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 804 GAAGAAATTAACTGGTTGTTTCTTCTGTTAGGGCAGATGTTGGGATGTTGTACTTTGGAC 863
Query 791 CAACTAAGGTACTTTTGTCAGTTGAATTCTAAACATCGAACCGGTTCTAAGGATCGTGTT 850
||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 864 CAACTCAGGTTCTATTGTCAGTTGAACAGTAAACATCGAACCGGTTCTAAGGATCGTGTT 923
Query 851 GTCTACATAACTTATCTTAGTCTATGCAAACAGCTCGACCCCGAAGGACCATTTAACCTG 910
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 924 CTCTACATAACTTATCTTGGTCTATGCAAACAGCTCGACCCCGAAGGACCATTTAGCCTG 983
Query 911 TGACTTATAA 920
|||||| |||
Sbjct 984 TGACTTGTAA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5