BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16220.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931792 jgi|Araly1|931792|scaffold_304249.1 824 0.0
Ahg936065 jgi|Araly1|936065|scaffold_500256.1 473 1e-132
Ahg931794 jgi|Araly1|931794|scaffold_304251.1 383 2e-105
Ahg346783 jgi|Araly1|346783|fgenesh1_pg.C_scaffold_5000175 374 1e-102
Ahg343684 jgi|Araly1|343684|fgenesh1_pg.C_scaffold_4000026 348 7e-95
Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 340 1e-92
Ahg939174 jgi|Araly1|939174|scaffold_503365.1 58.4 1e-07
Ahg936029 jgi|Araly1|936029|scaffold_500220.1 54.7 2e-06
Ahg936026 jgi|Araly1|936026|scaffold_500217.1 54.7 2e-06
Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797 52.8 6e-06
> Ahg931792 jgi|Araly1|931792|scaffold_304249.1
Length=1090
Score = 824 bits (446), Expect = 0.0
Identities = 803/970 (83%), Gaps = 45/970 (5%)
Strand=Plus/Plus
Query 258 ATTTCATATGAAGTTATCTCCAAACAATCTACGAATCTATCATGATAATACCCCAAGATA 317
||||||| ||||||| || ||| ||||| |||| ||| ||||| || ||| || ||||||
Sbjct 116 ATTTCATGTGAAGTTCTCACCAGACAATTTACGGATCAATCATTATTATAACCTAAGATA 175
Query 318 TTTTTCAATTGGTTACGCCTCTGGCTTGATCTATTTATATGGTGATCGATACGAGGCTAC 377
|||||||||||| ||||||||||||||||||||| | |||||||||||| || ||||||
Sbjct 176 TTTTTCAATTGGCTACGCCTCTGGCTTGATCTATATCTATGGTGATCGACACCAGGCTAG 235
Query 378 ACCTCTGATATGTAACCCCAACACAGGAAGGTATACGATCTTACCT-A-AGTGCTATACT 435
|||||||||||||||||||||||||||| ||||| | ||||||||| | || | |||||
Sbjct 236 ACCTCTGATATGTAACCCCAACACAGGACGGTATGCAATCTTACCTTATAG-G-TATACC 293
Query 436 TATAGAAAGGCGTTTAGCTTTTTCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTG 495
|| |||||||||| |||||||||||||||||| || ||||||||||| ||||||| ||||
Sbjct 294 TACAGAAAGGCGTATAGCTTTTTCGGGTTTGAACCGATTGACAAGCAATACAAGGTATTG 353
Query 496 TCCATGATCT-ATCCATCTGGTCCTGGTCAC-AGTAAAATTCTTACTTTTGGAGATGGGG 553
|||||| || |||||| |||||||||||| | |||| ||||||| ||||||| ||| |
Sbjct 354 TCCATGG-CTTATCCATGTGGTCCTGGTCATGA-TAAAGTTCTTACATTTGGAGCTGGAG 411
Query 554 ATATGAATTGGAAAAAGATAAAATAT-CGT-GTACTACATGATATTTACAGTCAAGGGAT 611
|||||| |||| || |||||||| | | | | | |||||| ||| ||| ||||| |
Sbjct 412 ATATGACGTGGAGAAGGATAAAATGTTCCTTG-AGG-CATGATGCTTATAGTGAAGGGGT 469
Query 612 ATGCATCAATGGTGTTTTGTATTACTTAGGTGACACGTCAGATTGGGATAATGAT---CA 668
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 470 ATGCATCAATGGGGTTTTGTATTACTTAGGTGACACGTCGGATTGTTATAATGATGGTCA 529
Query 669 TGATGTAACGTCTGGTAATGTGTTAGTTTGCTTTGAT-TTAAGATCCGAAA-GTTTCACC 726
||||||||||||| || ||||| |||||||||||||| ||| | || |||| ||| ||||
Sbjct 530 TGATGTAACGTCTCGTTATGTGATAGTTTGCTTTGATCTTAGG-TCTGAAAAGTT-CACC 587
Query 727 TTTATTGGCTTAGAATG-TG--GTCAATTGATAAACTATAAGGGCAAATTAGCTGTAATT 783
||||||||| ||||| | | || |||||||||||||||||| ||||||||||| |||
Sbjct 588 TTTATTGGCGTAGAAAGGTCTTGTGGATTGATAAACTATAAGGGTAAATTAGCTGTGATT 647
Query 784 TTTTGGgatgatgtggatgatga-tgatgtgaaagatgatgcc-attgatgagatgcatg 841
|||||||| ||| | |||| || | | | || |||| | | | ||| ||| ||
Sbjct 648 TTTTGGGAGGAT-T--ATGACGACTTTTATTCG-GAGGATGGCGAC-GCCGAGTTGCGTG 702
Query 842 tgtgGGTTCTAGAGGATGTCGAGAAAAAGGAATGGTCGAAATATGCCTACACTTGGACCG 901
|||||||| ||||||| || |||||| | |||||||||||||||||||||||||||||||
Sbjct 703 TGTGGGTTTTAGAGGACGTTGAGAAACATGAATGGTCGAAATATGCCTACACTTGGACCG 762
Query 902 A-GGATAAATTATACCGTTC-TCAGGTTTCCGTGGTTGGAATGACTGCTTCGGGTGAAAT 959
| || |||||| | |||| | |||||||||| |||||||| |||| |||||||||| ||
Sbjct 763 ATGG-TAAATTCTTCCGT-CGTCAGGTTTCCATGGTTGGAGTGACCACTTCGGGTGATAT 820
Query 960 AGTGTTTTCGATGCGCAAGTATACATCTGAACAACCGTTTTATGTTTACTACTTCAATCC 1019
||||||||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||
Sbjct 821 AGTGTTTTCGATGTGCAAGTATACATTTGAAGAACCGTTTTATGTTTTTTACTTGAATCC 880
Query 1020 CGAAAGGAACAATCTCCGACGTGTTGAAATCCAAGGTTTTG---AAGCGTTTACT-AAAT 1075
||||||||| | ||||| ||||||||||||||||||||||| ||| ||||| |||
Sbjct 881 CGAAAGGAAGACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAGTGTTTAAGGAAAC 940
Query 1076 TTGGTA-CAGTTTACACCTTTGTAGATCACGTAGAGGATCTTAATGTTTACAATTTAAAA 1134
||| || | |||| |||||||||| | |||||| || || ||||||| || |||||||
Sbjct 941 TTG-TAGC-GTTTGCACCTTTGTAAACCACGTACAGAATAGTAATGTTAACCATTTAAAG 998
Query 1135 C-ATTTCAAGTCAGTCCATCCTCCATCGGTGCAGCCAGAATATGATG-A-A-TCAGATTC 1190
| | | || ||||| |||||||||| |||| ||||||||||| ||| | | ||||| ||
Sbjct 999 CTACTCCA-GTCAGAGCATCCTCCATTGGTGGAGCCAGAATATTATGGACAATCAGAGTC 1057
Query 1191 AGAATCAGAA 1200
||| ||||||
Sbjct 1058 AGATTCAGAA 1067
> Ahg936065 jgi|Araly1|936065|scaffold_500256.1
Length=1293
Score = 473 bits (256), Expect = 1e-132
Identities = 571/713 (80%), Gaps = 61/713 (9%)
Strand=Plus/Plus
Query 119 CATATTTCAAAGAGTTGTTCCTGACCAGATCCTCTGCTAAGCCACGCCTCTTATTTGCCA 178
|||| ||||| |||||||||| |||||| ||||| |||||||| || |||||||| ||||
Sbjct 63 CATACTTCAACGAGTTGTTCCAGACCAGGTCCTCCGCTAAGCCGCGTCTCTTATTCGCCA 122
Query 179 T--C-GTACAA-A--ACGGTGTGTGGAGATTCTTTTC-A--TCTC--CTCG-G--T---T 221
| | | | || | || |||||||||| ||||| || | ||| || | | | |
Sbjct 123 TCGCAGAAGAAGATGACTGTGTGTGGAGCTTCTTCTCAACGCCTCAGCTTGAGAATACAT 182
Query 222 A-GAGAAGTCGTCGTCGACTCTTGTAGCAACCGCTGAATTTCATATGAAGTTATCTCCAA 280
| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 183 ATGAGAAATCGTCGTCGACTCTTGTAGCAGCCGCTGAGTTTCATATGAAGTTATCTCCAG 242
Query 281 ACAA--T-CTACGAATCTATCA-TGATAATACCCCAAGATATTTTTCAATTGGTTACGCC 336
|||| | || | || ||||| | || | ||||||||||||||||||||| ||||||
Sbjct 243 ACAAGTTAATAGGGATTTATCATTCTTACGA-CCCAAGATATTTTTCAATTGGCTACGCC 301
Query 337 TCTGGCTTGATCTATTTATATGGTGATCGATACGA-GGCTACACCTCTGATATGTAACCC 395
||||||||||||||| | ||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 302 TCTGGCTTGATCTATATGTATGGTGATCGATAC-ATGGCTAGACCTCTGATATGTAACCC 360
Query 396 CAACACAGGAAGGTATACGATCTTACCTAAGT-GCTATACTTATAGAAAGGCGTTTAGCT 454
|||||||||| | ||| |||||||||||| | | |||||||| |||||||||| |||||
Sbjct 361 CAACACAGGACGATATGTGATCTTACCTAA-TCGGTATACTTACAGAAAGGCGTATAGCT 419
Query 455 TTTTCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCATGA-TCTATCCATCT 513
|||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||
Sbjct 420 TTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGTATTGTCCATGCGT-TATCCATCT 478
Query 514 GGTCCTGGTCACAGTAAAATTCTTACTTTTGGAGATGGGGATATGA-ATTGGAAAAAGAT 572
||||||||||| | |||||| ||||| || |||||||| ||| ||| || ||| ||||||
Sbjct 479 GGTCCTGGTCATAATAAAATACTTACATTAGGAGATGGAGATCTGACAT-GGAGAAAGAT 537
Query 573 AAAATATCG-TGTACTACA---TGATATTTACAGTCAAGGGATATGCATCAATGGTGTTT 628
||||| || | ||| ||| || |||| | ||| | ||||||||||||||||| ||||
Sbjct 538 AAAATGTCCCT-TACCACAACCTGGTATTAAGAGTGATGGGATATGCATCAATGGGGTTT 596
Query 629 TGTATTACTTAGGTGACACGTCAGATTGGGATAATGATCATGATGTAACGTCTGGTAATG 688
|||||| ||||| || | | || ||| | | || || | || || | | ||
Sbjct 597 TGTATTTCTTAGCTGTGA-G--AG-TTG--A-A-TGCTCGTT-TG-AA--T-----A-TG 638
Query 689 TGTTAGTTTGCTTTGAT-TTAAGATCCGA-AAGTTTCACCTTTATTGGCTTAGA-ATG-T 744
|| |||||||||||||| ||| | || || || || ||| | ||||| | |||| | | |
Sbjct 639 TGATAGTTTGCTTTGATGTTAGG-TCTGAGAAATT-CACATATATTGACGTAGAGAGGAT 696
Query 745 G-GTCAATTGATAAACTATAAGGGCAAATTAGCTGTAATTTTTTGGgatgatg 796
|||||||||| ||||| || |||||||||||||| |||| |||||| ||||
Sbjct 697 TTGTCAATTGATCAACTACAATGGCAAATTAGCTGTGATTTATTGGGAGGATG 749
Score = 411 bits (222), Expect = 8e-114
Identities = 336/390 (86%), Gaps = 12/390 (3%)
Strand=Plus/Plus
Query 819 tgatgccattgatgagatgcatgtgtgGGTTCTAGAGGATGTCGAGAAAAAGGAATGGTC 878
|||||||| | ||||| ||| ||||||||||||||||||||| |||||| | ||||||||
Sbjct 820 TGATGCCACTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTGAGAAACATGAATGGTC 879
Query 879 GAAATATGCCTACACTTGGACCGAGGATAAATTATACCGTTC-TCAGGTTTCCGTGGTTG 937
|||||||||||||||||||||||| |||| ||| | |||| | ||| |||||| | | ||
Sbjct 880 GAAATATGCCTACACTTGGACCGATGATACATTCTTCCGT-CGTCATGTTTCCATCGCTG 938
Query 938 GAATGACTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTATACATCTGAACAACCGT 997
|| ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 939 GAGCGACTGCTTCGGGTGAAATAGTATTTTCGATGCGCAAGTATTCATCTAAACAACCGT 998
Query 998 TTTATGTTTACTACTTCAATCCCGAAAGGAACAATCTCCGACGTGTTGAAATCCAAGGTT 1057
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 999 TTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTT 1058
Query 1058 TTG---AAGCGTTTACTAAAT-TTGGTA-CAGTTTACACCTTTGTAGATCACGTAGAGGA 1112
||| ||||||||| ||| ||| || | ||| |||||||||| | |||||||||||
Sbjct 1059 TTGGTGAAGCGTTTAAGAAAACTTG-TAGC-GTTCGCACCTTTGTAAACCACGTAGAGGA 1116
Query 1113 TCTTAATGTTTACAATTTAAAACATTTCAAGTCAGTCCATCCTCCATCGGTGCAGCCAGA 1172
|||| ||||| || |||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 1117 TCTTGATGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGAAGCCAGA 1176
Query 1173 ATATGAT-GAAT-C-AGATTCAGAATCAGA 1199
|| | || | | | ||| |||||||||||
Sbjct 1177 ATTTTATTGTCTACCAGAATCAGAATCAGA 1206
> Ahg931794 jgi|Araly1|931794|scaffold_304251.1
Length=476
Score = 383 bits (207), Expect = 2e-105
Identities = 393/478 (82%), Gaps = 31/478 (6%)
Strand=Plus/Plus
Query 335 CCTCTGGCTTGATCTATTTATATGGTGATCG----ATACGAGGCTACACCTCTGATATGT 390
|||||||||||||||| | |||||||||| |||| |||||| |||| ||||||||
Sbjct 1 CCTCTGGCTTGATCTACATCCATGGTGATCGATATATACCAGGCTAGACCTGTGATATGT 60
Query 391 AACCCCAACACAGGAAGGTATACGATCTTACCTAAGT-GCTATACTTATAGAAAGGCGTT 449
||||||| ||||||| ||||| ||||||||||| | | | ||||| || ||||||||||
Sbjct 61 AACCCCATCACAGGACGGTATGCGATCTTACCTGA-TCGGTATACCTACAGAAAGGCGTA 119
Query 450 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCATGATCT-ATC 508
||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||
Sbjct 120 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGTATTGTCCATGG-CTTATC 178
Query 509 CATCTGGTCCTGGTCA-CAGTAAAATTCTTACTTTTGGAGATGGGGATATGAATTGGAAA 567
||| |||||||||||| || |||||||||||| ||||||||||| ||||||| |||| |
Sbjct 179 CATTTGGTCCTGGTCATCA-TAAAATTCTTACATTTGGAGATGGAGATATGACGTGGAGA 237
Query 568 AAGATAAAATAT-CGTGTACTACATGATATTTAC-AGTCAAGGGATATGCATCAATGGTG 625
|||||||||| | | | ||| |||||| | | | ||| |||||||||||||||||||||
Sbjct 238 AAGATAAAATGTACCT-TACGACATGAAAGT-AGGAGTGAAGGGATATGCATCAATGGTG 295
Query 626 TTTTGTATTACTTAGGTGACACGTCAG-ATTGGG---AT-A-A-TGATCAT-GATGTAAC 677
||||||||||| ||||||||||||| | | || | || | | || |||| | ||||||
Sbjct 296 TTTTGTATTACCTAGGTGACACGTC-GCAATGTGTTCATTATAATGCTCATTG-TGTAAC 353
Query 678 GTCTGGTAATGTGTTAGTTTGCTTTGAT-TTAAGATCCGAAAGTTTCACCTTTATTGGCT 736
|||| || ||||| ||||||||||| || ||| | || |||| |||||||||||| |
Sbjct 354 GTCTCGTTATGTGATAGTTTGCTTTCATGTTAGG-TCTGAAAAATTCACCTTTATTAACG 412
Query 737 TAGAATG-TG--GTCAATTGATAAACTATA-A-GGGCAAATTAGCTGTAATTTTTTGG 789
| ||| | | ||| |||||| ||||||| | |||||| |||||||| ||||| |||
Sbjct 413 TGGAAAGGTTTTGTCGATTGATCAACTATATAAGGGCAATTTAGCTGTGATTTTCTGG 470
> Ahg346783 jgi|Araly1|346783|fgenesh1_pg.C_scaffold_5000175
Length=1287
Score = 374 bits (202), Expect = 1e-102
Identities = 468/590 (79%), Gaps = 44/590 (7%)
Strand=Plus/Plus
Query 223 GAGAAGTCGTCGTCGACTCTTGTAGCAACCGCTGAATTTCATATGAAGTTATCTCCA-AA 281
||||| ||||||||||||||||||||| | |||||||||||| ||||||| |||||| ||
Sbjct 220 GAGAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGAAGTTCTCTCCAGAA 279
Query 282 CAATCT-ACGAATCTATCATGATAAT-ACCCCAAGATATTTTTCAATTGGTTACGCCTCT 339
||| | | | ||| || || || | | | || ||||||||||||||| ||||| |||
Sbjct 280 -AATTTGA-GGATCAATTATTATGGTGA-CATAAAATATTTTTCAATTGGCTACGCTTCT 336
Query 340 GGCTTGATCTATTTATATGG-TGATCGATACGAGGCTACACCTCTGATATGTAACCCCAA 398
|||||||||||| | ||||| || ||||||| | |||| |||||||||||||||||||||
Sbjct 337 GGCTTGATCTATATCTATGGTTG-TCGATACCAAGCTAGACCTCTGATATGTAACCCCAA 395
Query 399 CACAGGAAGGTATACGATCTTACCTAAGT-GCTATACTTATAGAAAGGCGTTTAGCTTTT 457
||||||| ||||| | ||||||||||| | | |||||||||||||| |||| ||||||||
Sbjct 396 CACAGGACGGTATGCAATCTTACCTAA-TCGTTATACTTATAGAAAAGCGTATAGCTTTT 454
Query 458 TCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCAT--GATCTATCCATCTGG 515
||||||||||||| ||||||||||| |||||||| |||||||| | | |||||||||||
Sbjct 455 TCGGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCATCCG-T-TATCCATCTGG 512
Query 516 TCCTGGTCACAGTAAAATTCTTACTTTTGGAGATGGGGATATGAATTGGAAAAAGATAAA 575
||| || | | ||||||||||| ||||||||||| ||| | | |||| |||||| ||
Sbjct 513 TCCAGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAA 572
Query 576 ATATCG-T--GTACTACATGATATTTACAGTCAAGGGATATGCATCAATGGTGTTTTGTA 632
|| || | | || || ||| ||| | ||| | ||||| ||||||||||| ||||||||
Sbjct 573 ATTTCCCTTAGGACGACCTGAAATTAAGAGTGATGGGATTTGCATCAATGGGGTTTTGTA 632
Query 633 TTACTTAGGTGACACGTCAGATTGGGATAATGATCATGATGTAACGTCTGGTAATGTGTT 692
|| ||||||||| | | || | | | | |||| || || | | | | |||| |
Sbjct 633 TTTCTTAGGTGAGA--T-AGGT-G--A-AG-GATCTTG-TG-A---T-T---A-TGTGAT 674
Query 693 AGTTTGCTTTGAT-TTAAGATCCGA-AAGTTTCACCTTTATTGGCT-TAG-AATGTG--G 746
| ||||||||||| ||| | || || || || ||| | |||| | ||| || || |
Sbjct 675 ATTTTGCTTTGATGTTAGG-TCTGAGAAATT-CACGTGTATTTA-TGTAGGAAGGTTTTG 731
Query 747 TCAATTGATAAACTATAAGGGCAAATTAGCTGTAATTTTTTGGgatgatg 796
|| |||||||||||| ||||||||||||||||| |||| |||||| ||||
Sbjct 732 TCGATTGATAAACTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATG 781
> Ahg343684 jgi|Araly1|343684|fgenesh1_pg.C_scaffold_4000026
Length=1308
Score = 348 bits (188), Expect = 7e-95
Identities = 297/348 (85%), Gaps = 13/348 (4%)
Strand=Plus/Plus
Query 819 tgatgccattgatgagatgcatgtgtgGGTTCTAGAGGATGTCGAGAAAAAGGAATGGTC 878
|||||||||| ||||| ||| | ||||| ||||||||||||| |||||| ||||||||||
Sbjct 951 TGATGCCATTAATGAGTTGCGTTTGTGGATTCTAGAGGATGTTGAGAAACAGGAATGGTC 1010
Query 879 GAAATATGCCTACACTTGGACCGAGGATAAATTATACCGTTC-TCAGGTTTCCGT-GGTT 936
|||||||||||||||||||| ||| |||||||| | || | | || |||||| | |||
Sbjct 1011 GAAATATGCCTACACTTGGAGCGATGATAAATTCTTCCAT-CGTCTTGTTTCCATTGGT- 1068
Query 937 GGAATGACTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTATACATCTGA-ACAACC 995
||| |||||||||||||||| |||||||||||||| |||||||||||| || | ||||||
Sbjct 1069 GGAGTGACTGCTTCGGGTGAGATAGTGTTTTCGATACGCAAGTATACACCT-ACACAACC 1127
Query 996 GTTTTATGTTTACTACTTCAATCCCGAAAGGAACAATCTCCGACGTGTTGAAATCCAAGG 1055
||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 1128 GTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTGCAACGTGTTGAAATCCAAGG 1187
Query 1056 TTTTG---AAGCGTTTACTAAAT-TTGGTA-CAGTTTACACCTTTGTAGATCACGTAGAG 1110
||||| ||| ||||| ||| ||| || | |||| |||||||| | | |||||||||
Sbjct 1188 TTTTGGTGAAGGGTTTAAGAAAACTTG-TAGC-GTTTGCACCTTTGCAAACCACGTAGAG 1245
Query 1111 GATCTTAATGTTTACAATTTAAAACATTTCAAGTCAGTCCATCCTCCA 1158
|||||||||||| | ||||| |||| ||||||||||||||||||||
Sbjct 1246 GATCTTAATGTTAATGATTTAGAACAACTCAAGTCAGTCCATCCTCCA 1293
> Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1
Length=1705
Score = 340 bits (184), Expect = 1e-92
Identities = 818/1104 (74%), Gaps = 123/1104 (11%)
Strand=Plus/Plus
Query 20 CGAATGATCTCATCCTGGAGGTTTTGTCAAGATTGCCTTTAAAGTCAGTCGCGAGGTTTC 79
|||| || |||||||| ||| | ||||||||||||||| ||||||||| |||||||
Sbjct 138 CGAAAGAACTCATCCTCGAGATATTGTCAAGATTGCCTGCAAAGTCAGTTAAAAGGTTTC 197
Query 80 ATTGCGTGTCAAAGCGGTGGGCATCAATGTTTGGTAGTCCATATTTCAAAGAGTTGTTCC 139
|||| ||||| |||| ||| |||||||| || || ||||| |||||| |||||||||||
Sbjct 198 ATTGTGTGTCGAAGCAATGGTCATCAATGCTTAGTCGTCCACATTTCACAGAGTTGTTCC 257
Query 140 TGACCA-G--ATCCTCTGCTAAGCCACGCCTCTTATTTGCCATCGTACAAAACGG--TGT 194
|||||| | ||||||||| |||| || |||||||| ||||||| | ||||||| |
Sbjct 258 TGACCAGGTCCTCCTCTGCTCAGCCGCGTCTCTTATTCGCCATCG-A-AAAACGGAATCA 315
Query 195 GTGGAGATTCTTTTC-AT--CTC--C-TC-G-GT---TA-GAGAAG---TCGTCGTCGAC 239
|||||| ||||| || | ||| | || | | || |||||| ||||||| | |
Sbjct 316 GTGGAGCTTCTTCTCGTTGCCTCAGCATCTGACTCCATATGAGAAGTCTTCGTCGTTGTC 375
Query 240 TCTTGTAGCAACCGCTGAATTTCATATGAAGTTATCTCCAAACAATCTACGA-ATCTATC 298
|||||||| |||| |||||||||| |||||||| ||||| | | | | | |||||||
Sbjct 376 TCTTGTAGTAACCCCTGAATTTCACATGAAGTTCCCTCCAGATGGTATGC-AGATCTATC 434
Query 299 AT-GATAATACCCCAAGATATTTTTCAAT-TGGTTACGCCTCTGGCTTGATCTATTTATA 356
| | | || || || ||||| || ||| || |||||||| ||||| ||||| ||
Sbjct 435 CTCG-TCAT-GACC--GACGGTTTTC-ATGTGGCTATGCCTCTGGTTTGATGTATTTCTA 489
Query 357 TGG--TGATCGAT--AC--GA-GGC-TAC-----A---CCTCTGATATGTAACCCCAACA 400
||| || | ||| || || ||| ||| | ||| |||||||||| ||| | |
Sbjct 490 TGGTATG-TGGATCAACGAGAGGGCTTACGATGGAGTGCCTGTGATATGTAA-CCCTATA 547
Query 401 -CAGGAAGGTATACGATCTTACC-TAAGTGCTATACTTATAGAAAGGCGTTTAGCTTTTT 458
||||| ||||| ||| |||||| | || | | || ||||||||||||||||||||
Sbjct 548 TCAGGACGGTATGCGACCTTACCGTTTCTG-GAAAGGTACAGAAAGGCGTTTAGCTTTTT 606
Query 459 CGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCATGATCT-ATCCATCTGGTC 517
||||||||| || ||||||||||||||||||| |||| |||| || | ||||||||||
Sbjct 607 CGGGTTTGATCCGATTGACAAGCAGTACAAGGTGTTGTTCATGG-CTTACCCATCTGGTC 665
Query 518 CTGGTCA-CAGTAAAATTCTTACTTTTGGAGATGGGGATATGAATTGGAAAAAGATAAAA 576
||| || || || | |||| || ||||||| ||| || |||| ||||| ||||||| ||
Sbjct 666 CTGATCCTCA-TAGAGTTCTGACATTTGGAGCTGGTGAAATGAGTTGGAGAAAGATAGAA 724
Query 577 TAT-CGTGTACTACATGATATTTAC-AGTCAAGGGATATGCATCAATGGTGTTTTGTATT 634
| | | ||| |||||| ||| | ||| | |||||||||||| |||| ||| ||||||
Sbjct 725 TGTTCA-GTAAGACATGACATTG-CGAGTGATGGGATATGCATCGATGGAGTTGTGTATT 782
Query 635 ACTTAGGTGACACGTCAGA-TTGGGATAATGATCATGATGTAACGTCTGGTAATGTGTTA 693
|||||||||| ||||| || || || ||| | || | | | || | | || |
Sbjct 783 ACTTAGGTGATACGTCTGAGTT----TA-TGA-C-TGCT-T----T-TG-T---G-GT-A 823
Query 694 GTTTGCTTTGATTTAAGATCCGAAAGTTTCACCTTTATTGGCTTAG-AA--TGTGGTCAA 750
|||||||||||| |||| || || | |||| ||||||| | || || | | || ||
Sbjct 824 GTTTGCTTTGATGTAAGGTCTGAGACATTCAGCTTTATTTACCCAGGAAGCTATTGTGAA 883
Query 751 TTGATAAACTATAAGGGCAAA-TTAGC-TGTAATTTTTTGGgatgatgtggatgatgatg 808
|||||||||| ||||| ||| || | | | |||||| |||||| || | | |
Sbjct 884 GTGATAAACTACAAGGG-AAAGTTGGGAT-TGGTTTTTT---ATGATG---AT--T-ACG 932
Query 809 atgtgaaagatgatgccattgatgagatgcatgtgtgGGTTCTAGAGGATGTCGAGAAAA 868
|| | |||||||||||| | ||| | |||||||||||||||| |||||||
Sbjct 933 CTG--A----TGATGCCATTGA-GT--TGCGTATGTGGGTTCTAGAGGACAAGGAGAAAA 983
Query 869 AGGAATGGTCGAAA-TATGCCTACAC-TTGGACCGAGGATAAATTATACCGTTC-TCAGG 925
||| ||||| ||| |||||||||| ||| | || |||||||| | | | | | |
Sbjct 984 TGGAGTGGTC-AAAGTATGCCTACAAGTTG-AGGGATGATAAATTCTTG-GCTAATTACG 1040
Query 926 TTTCCGTGGTTGGAATGACTGCTTCGGGTGAAATAGTGTT-T-TCGATGCGCA-AGTATA 982
||||| | |||||| ||| |||| ||||||| || |||| | || ||| || | || |
Sbjct 1041 TTTCCATTGTTGGAGTGAGTGCTGCGGGTGAGAT--TGTTCTGTCAATG-GCTGATTACA 1097
Query 983 CATCTGA-ACAACCGTTTTATGT-TTACTACTTCAATCCCGAAAGGAACA-ATCTCCGAC 1039
| || || ||||||||||||| | || ||||||||||||||||||||||| | |||| |
Sbjct 1098 CGTC-GAGACAACCGTTTTATCTATT-CTACTTCAATCCCGAAAGGAACACA-CTCCAAT 1154
Query 1040 GTGTTGAAATCCAAGGTTTTGAAG 1063
|||||||||| ||||| |||||||
Sbjct 1155 GTGTTGAAATTCAAGGCTTTGAAG 1178
> Ahg939174 jgi|Araly1|939174|scaffold_503365.1
Length=2186
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 607 GGGATATGCATCAATGGTGTTTTGTATTACTTAG 640
||| ||||||||||||||||||||||||||||||
Sbjct 706 GGGGTATGCATCAATGGTGTTTTGTATTACTTAG 739
> Ahg936029 jgi|Araly1|936029|scaffold_500220.1
Length=666
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 607 GGGATATGCATCAATGGTGTTTTGTATTA 635
|||||||||||||||||||||||||||||
Sbjct 206 GGGATATGCATCAATGGTGTTTTGTATTA 234
> Ahg936026 jgi|Araly1|936026|scaffold_500217.1
Length=666
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 607 GGGATATGCATCAATGGTGTTTTGTATTA 635
|||||||||||||||||||||||||||||
Sbjct 206 GGGATATGCATCAATGGTGTTTTGTATTA 234
> Ahg336232 jgi|Araly1|336232|fgenesh1_pg.C_scaffold_1002797
Length=888
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 609 GATATGCATCAATGGTGTTTTGTATTAC 636
||||||||||||||||||||||||||||
Sbjct 345 GATATGCATCAATGGTGTTTTGTATTAC 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5