BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G16225.1

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931796 jgi|Araly1|931796|scaffold_304253.1                        220    3e-57


> Ahg931796 jgi|Araly1|931796|scaffold_304253.1
Length=236

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 169/193 (88%), Gaps = 3/193 (2%)
 Strand=Plus/Plus

Query  75   GGGTGGAGCTATACATAGATCGATGCTCAATATTACAATACCACCGTGTATCAAAACCTT  134
            |||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  27   GGGTGGCGAGATACATAGATCAATGCTCAATATTACAATACCACCGTGTATCAAAACCTT  86

Query  135  TTGCAAGGTACTAACATTTGAAAAGCATTGTTGGTGTTGTTTCGGACCGAGAGCTAAGAA  194
            ||||||| || |  ||||  ||||| || ||||||||||||||||||| |||||||||||
Sbjct  87   TTGCAAGATA-T--CATTCAAAAAGGATCGTTGGTGTTGTTTCGGACCAAGAGCTAAGAA  143

Query  195  AAAACTTTGTTGGAATGAACAAAAATATCCTAACGCCAAAGAGCTATGCTACGCTGGGTG  254
              ||| ||||||||| ||| || | |||||||| ||||||||||||||||||||  | ||
Sbjct  144  GGAACGTTGTTGGAAAGAAGAAGATTATCCTAATGCCAAAGAGCTATGCTACGCCAGATG  203

Query  255  TATAATAGAATAA  267
            |||||||||||||
Sbjct  204  TATAATAGAATAA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9317935684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5