BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16230.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1 2017 0.0
> Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1
Length=1359
Score = 2017 bits (1092), Expect = 0.0
Identities = 1251/1330 (94%), Gaps = 2/1330 (0%)
Strand=Plus/Plus
Query 1 ATGGctctctccatcctcttccttctcctcttcattctcttctctATTTCGCCGTCAAAT 60
||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1 ATGGCTCTCTCCATCTTCTTCCCTCTCCTCTTCGTTCTCTTCTCTGTTTCGCCGTCAAAT 60
Query 61 GCACAGTCGTTTATCGGAGTAAACTACGGCTTACTATCCGACAACCTCCCGCCACCTTCT 120
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 61 GCACAGTCGTTTATCGGAGTAAACTACGGCTTACTAGCCGACAACCTCCCACCACCGTC- 119
Query 121 C-AAACGGCCAAACTCCTCCAATCTACCTCCATCCAGAAAGTGAGGCTATACAATGCGGA 179
| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 120 CGAAACGGCCAAACTCCTTCAATCTACCTCCATCGAGAAAGTGAGGCTATACAATGCCGA 179
Query 180 TTCCTCCATCATCACATCCTTGGTTGGAACCGGTATTGGTATTGTTATCGGAGTAGCAAA 239
| |||||||||||| |||||||| || |||| || || ||||||||||||||||| ||
Sbjct 180 TCCCTCCATCATCAAATCCTTGGCAGGCACCGACATCGGCATTGTTATCGGAGTAGCCAA 239
Query 240 TGGCGATCTCCCGTCTATCGCCTCGGATCTCAACATTGCCTCTCAGTGGATAAATTCCAA 299
|||||||||||||||||| ||||| ||| |||| | || ||||||||||||||||||||
Sbjct 240 TGGCGATCTCCCGTCTATGGCCTCTGATTTCAATGTCGCTTCTCAGTGGATAAATTCCAA 299
Query 300 CGTACTTCCTTTCTATCCTGCCTCCAACATCATTCTCATCAATGTCGGCAACGAGGTGTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTACTTCCTTTCTATCCTGCCTCCAACATCATTCTCATCAATGTCGGCAACGAGGTGTT 359
Query 360 GTTGTCAAATGATCTGAATCTTGTAAACCAACTTCTCCCGGCTATGCAAAATGTTCAAAA 419
|||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 360 GTTGTCTAATGACCTGAATCTAGTGAACCAACTTCTCCCGGCGATGCAAAATGTTCAAAA 419
Query 420 GGCTCTCGAGGCGGTTTCACTAGGTGGAAAAATCAAGGTGTCTACTGTCCATGCAATGAC 479
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 420 GGCCCTCGAGGCGGTTTCACTAGGCAGAAAAATCAAGGTGTCTACGGTCCATGCAATGAC 479
Query 480 AGTACTAGGCAACTCCGAACCGCCATCAGCTGGTTCGTTTGCTCCTAGTTATCAGGCCGG 539
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 480 GGTGCTAGGCAACTCCGAACCGCCATCAGCTGGTTCATTTGCTCCTAGTTATCAGGCTGG 539
Query 540 TTTAAAGGGCATTCTACAGTTTCTTAGCGATACCGGGTCGCCTTTTGCCATCAACCCGTA 599
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 540 TTTAAAGGGCATTCTACAGTTCCTTAGCGATACTGAGTCGCCTTTTGCCATCAACCCGTA 599
Query 600 CCCGTTCTTTGCATATCAGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGTCTTTTCCA 659
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCCGTTCTTTGCGTACCAGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGTCTTTTCCA 659
Query 660 GCCTAACCCTGGACGGGTAGACTCAAACACTGGAATCAAGTACATGAACATGTTTGATGC 719
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 660 GCCTAACCCTGGACGGGTAGACTCCAACACTGGAATCAAGTACATGAACATGTTCGATGC 719
Query 720 TCAGGTTGATGCAGTGCACTCAGCTTTGAAATCGATAGGATTCGAGAAAGTGGAAGTGTT 779
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 TCAGGTTGATGCAGTACACTCAGCTTTGAAATCGATGGGATTCGAGAAAGTAGAAGTGTT 779
Query 780 GGTGGCCGAAACTGGTTGGCCATCAACCGGTGACAGCAACGAGGTAGGTCCGAGTGTTGA 839
||| |||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 780 GGTAGCCGAAACAGGTTGGCCATCTACCGGTGACAACAACGAGGTAGGTCCAAGTGTTGA 839
Query 840 GAATGCTAAAGCTTACAACGGAAATCTCATTGCTCACTTAAGGTCCATGGTTGGGACTCC 899
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 GAATGCTAAGGCTTACAATGGAAATCTCATTGCTCACTTAAGGTCCATGGTTGGCACTCC 899
Query 900 GCTCATGCCCGGAAAATCCATCGACACTTACATTTTCGCTCTCTTTGACGAGAATCTCAA 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTCATGCCCGGCAAATCCATCGACACTTACATTTTCGCTCTCTTTGACGAGAATCTCAA 959
Query 960 GCCTGGTCCTTCTTTTGAGCAATCTTTTGGCCTTTTCAAGCCTGATCTTTCCATGGCCTA 1019
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCCTGGTCCTTCCTTTGAGCGATCTTTTGGCCTTTTCAAGCCTGATCTTTCCATGGCCTA 1019
Query 1020 CGACATTGGACTCACTAAAACTACTAGTAGCCAGACGTCACAATCTCCACAGTTGGGAAA 1079
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1020 CGACATTGGACTCACTAAAACTACTAGTAGTCAGACTTCACAATCTCCACAGTTGGGAAA 1079
Query 1080 AGTAACATCAATGGGATGGTGTGTGCCAAAGGAGGATGCAACTCAAGAGCAGTTGCAAGA 1139
|| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 AGCAACATCCATGGGATGGTGTGTGCCAAAGGAGGATGCGACTCAAGAGCAGTTGCAAGA 1139
Query 1140 TAGTCTAGATTGGGTTTGTGGGCAGGGAATTGATTGTGGCCCAATAATGCCAGGAGGAGT 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1140 TAGTCTAGATTGGGTTTGTGGGCAGGGAATCGATTGTGGCCCAATAATGCCAGGAGGGGT 1199
Query 1200 TTGTTTCGAGCCTAACAATGTCGCCTCTCATACAGCCTATGCCATGAATCTTTATTTCCA 1259
||||||||||||||||||| | | |||||||||||| ||||| ||| |||||||||||||
Sbjct 1200 TTGTTTCGAGCCTAACAATCTTGTCTCTCATACAGCATATGCTATGGATCTTTATTTCCA 1259
Query 1260 AAAATCTCCTGAAAACCCTACGGATTGCGATTTCTCTAAAACCGCCAGGATCACTTCTGA 1319
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1260 AAAATCTCCTGAAGACCCTACGGATTGCGATTTCTCTAAAGCCGCGAGGATCACTTCTGA 1319
Query 1320 GAACCCTAGT 1329
||||||||||
Sbjct 1320 GAACCCTAGT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5