BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16270.1
Length=2499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480796 jgi|Araly1|480796|fgenesh2_kg.3__3497__AT2G16270.1 2026 0.0
Ahg471862 jgi|Araly1|471862|fgenesh2_kg.1__1816__AT1G16630.1 235 1e-60
> Ahg480796 jgi|Araly1|480796|fgenesh2_kg.3__3497__AT2G16270.1
Length=2296
Score = 2026 bits (1097), Expect = 0.0
Identities = 1401/1540 (91%), Gaps = 52/1540 (3%)
Strand=Plus/Plus
Query 2 TTTTAATCACTCATGGCTTCTCCTACCAACAAAAATCCCTCCTTTTCTCCTCCAATCCCT 61
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TTTTAATCACTCATGGCTTCTCCTACCAACAAAACCCCCTCCTTTTCTCCTCCAATCCCT 60
Query 62 AACAGACCAAACCCTAAACCTAGAAACTCAGAAGCCGGTGATCCGTTACGCCGGAGTTTT 121
|||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||
Sbjct 61 AACAGACCAAACCCTAAACCCAGAAACTCAGAAGCCGGTGACCCTTTACGGCGGAGCTTT 120
Query 122 GGTGGCAACCCTTTTCCGGCGAATTCAAAAGTCAACATCCCCTCAGATT-TGACTAGGAG 180
||||||||||||||||||| |||| ||||| ||||||| |||||||||| | |||| ||
Sbjct 121 GGTGGCAACCCTTTTCCGGGGAATACAAAAATCAACATTCCCTCAGATTAT-TCTAGAAG 179
Query 181 GAACTCTTTTGGTGGAGATAAAGAGAACGAGACCAAACCTGTTCAACTAACTCCAAAAGG 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 180 GAACTCTTTTGGTGGAGATAAAGAGAACGAGACCAAACCTGTT---CTAACTCCAAAAAG 236
Query 241 TTCCAAGAACTTCATGTCACCAACAATTTCAGCAGTTTCTAAAATCAATGCGTCACCAAG 300
|||||||||||| ||||| |||||||||||||| ||||||||||||||| | || |||||
Sbjct 237 TTCCAAGAACTTTATGTCGCCAACAATTTCAGCGGTTTCTAAAATCAATCCATCTCCAAG 296
Query 301 GAAGAGAGTGTTGTCTGATAAAAACGAAATGTCTCGCTCCTTCTCTGATGTTAAAGGTCT 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GAAGAGAGTGTTGTCTGATAAAAACGAAATGTCTCGATCCTTCTCTGATGTTAAAGGTCT 356
Query 361 AATCTTGGAGGATGATAACAAAAGAAATCATCACCGAGCTAAGTCATGTGTTTCGTTTTC 420
||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 357 AATTTTGGAGGATGATAGCAAAAGAAATCATCACCGAGCTAAGTCTTGTGTTTCATTTTC 416
Query 421 GGATGTCTTGCATACTATTTGTATCGATGATG-AGAAGAAGTTTGTGGAATCACATGACA 479
||||||||| || ||||||||| ||||||| | ||||||||||||||||||| |||||||
Sbjct 417 GGATGTCTTACACACTATTTGTGTCGATGA-GAAGAAGAAGTTTGTGGAATCTCATGACA 475
Query 480 TGACTGTGACTGATTTTGATGAGAAGGAAGTTTATGAGAACAAAGGGATTACGTATTCTG 539
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 476 TGACTGTGACTGATTTTGATGAGAAGGAAGTTTATGAGAACAAGGGGATTACATATTCTG 535
Query 540 ATCCGAGGTTTAGGATTAGTCCTCGTCCTTCTGTTCCATATACATCTCCTGAGTTTGCAG 599
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 ATCCAAGATTTAGGATTAGTCCTCGTCCTTCTGTTCCATATACATCTCCTGAATTTGCAG 595
Query 600 CTTGTGAAGTTGATACATTGTTGCCTCCTTATGATCCCAAGAAGAATTTTCTGTCGCCGA 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 CTTGTGAAGTTGATACATTGTTGCCTCCTTATGATCCGAAGAAGAATTTTCTGTCGCCGA 655
Query 660 GGCCTCAGTTTCTTCATTATAAGCCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGTA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 GGCCTCAGTTTCTTCATTATAAGCCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGCA 715
Query 720 AGCAGCTTGAGGAACTTTTCATCTCTGAAAGCTCTTCTGATGACACTGAATTGTCTGTAG 779
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 716 AGCAACTTGAGGAACTTTTCATCTCTGAAAGCTCTTCTTCGGAGACTGAATTGTCTGTAG 775
Query 780 AAGAATCTGAGGAACAAGAGAAGGATGGAGCTGAGGAGGTGGTAGTAGAAGAAGAAACCG 839
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 776 AAGAATCTGATGAACAAGAGAAGGATGGAGCTGAGG---TGGTAGTAGAAGATGAAACCA 832
Query 840 AAGATGTGGAGCAATCAGAAGCAGAGAGTGATGAAGAAATGGTTTGTGAGAGCGTTGAAG 899
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 833 AAGATGTGGAGCAATCCGAAGCAGAGAGTGATGAAGAGATGGTTTGTGAGAGCGTTAAAG 892
Query 900 AAACAACAAGTCAAGTTCCAAAACAGTCTGGTTCCAGGAAATTCAAGTTCCTTGGTTGGT 959
||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 893 AAACAACAAGTCATGTTCCAAAGCAGTCTGGTTTCAGGAAGTTCAAGTTCCTTGGTTGGT 952
Query 960 TTTTGGCTCTGGCTTTGGGGTATTTGTTGGTTTCAGCGACCTTTTCTCCACTGATGAAAT 1019
|||||||| |||| ||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 953 TTTTGGCTTTGGCCATGGCGTATTTGTTGGTTTCAGCAACCTTTTCTCCACCGATGAAAT 1012
Query 1020 CAAGTTTCAACGAGTTCCATATCCCAAAAGAGATCACAGAGTTTGCAAAAGCTAATAACT 1079
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1013 CAAGTTTCAACGAGTTTCATATCCCAAGAGAGATCACAGAGTTTGCAAAAGCTAATAACT 1072
Query 1080 TGGATCA-GTTGAGTGATAAGCTCTGGACTTTGACAGAATCATCACTTGTGTACATGGAT 1138
|||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1073 TGGA-CAAGTTGAGTGAAAAGCTCTATACTTTGACAGAGTCATCACTTGTGTACATGGAT 1131
Query 1139 AAGCTGATCTCACGTCTTGGACGAGGAAATGAGGAATATAGTCAGTTACAATTTCATAAC 1198
|||||||||||| |||||||| |||| ||||||| |||| ||||| | ||||||||||||
Sbjct 1132 AAGCTGATCTCAAGTCTTGGAGGAGGTAATGAGGTATATGGTCAGCTGCAATTTCATAAC 1191
Query 1199 TTGACATATACTCTTGAGGATAGTACTGTTTTCAAGCCAACATGTGTTGAAATCATTCAA 1258
|||||||||||||| || |||| |||||||||| || ||||| |||||||||||| | ||
Sbjct 1192 TTGACATATACTCTGGAAGATAATACTGTTTTCCAGTCAACAAGTGTTGAAATCAATGAA 1251
Query 1259 GAACCATTACAAGAGAATAGCAGAAGT-GAAA--A--C---A-G-T--CT---T-GAAGA 1302
||||||||||||||||| |||| |||| |||| | | | | | || | |||||
Sbjct 1252 GAACCATTACAAGAGAAGAGCA-AAGTTGAAACCAATCTTGAAGATGTCTACATAGAAGA 1310
Query 1303 TGGCTCTGT---T-AAT--GAGGAGGAGAGTGGAGCAGAAGAAAACTCTGAAGT--T--G 1352
||||||||| | ||| ||||||||||||||| |||| |||||||||||||| | |
Sbjct 1311 TGGCTCTGTCAATGAATTTGAGGAGGAGAGTGGAACAGAGGAAAACTCTGAAGTGGTTAG 1370
Query 1353 TG-TG-------T-C--AATTTGATGAACTAG-CTGAGGTGAAACCGAGCACGGATATAG 1400
|| || | | |||||||||||| || ||||||||||||||||||| |||||||
Sbjct 1371 TGATGCAGAAACTACTGAATTTGATGAAC-AGGCTGAGGTGAAACCGAGCACAGATATAG 1429
Query 1401 AATCAAATGACGGTGAAAGAAACTTGAAAGCTCTTTTTGAAGATGGCTTAGAGTTGAACA 1460
|||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1430 AATCCAATGACGGTGAAGGAAACTTGAAAGCTCTTTTCGAAGATGGCTTAGAGTTGACCA 1489
Query 1461 TTGAAGAACTGAGAGAGTCTGAGATGAGTCCTGAAGAAAA 1500
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1490 TTGAAAAACTGAGAGAGTCTGAGATGAGTCCTGAAGAAAA 1529
Score = 462 bits (250), Expect = 5e-129
Identities = 468/564 (83%), Gaps = 51/564 (9%)
Strand=Plus/Plus
Query 1708 TGCTGAAAGTGGATCAGAAGAAGGTTTTGGA-GAAATTGCAGCAGAAACTAGTGATGATC 1766
|||||||||||||||| |||||| |||| || |||| |||||||||||||||||||||||
Sbjct 1653 TGCTGAAAGTGGATCAAAAGAAGCTTTT-GAGGAAACTGCAGCAGAAACTAGTGATGATC 1711
Query 1767 TTCATCTTAAAGTAAGGTCTTCTAATAAGGCGT-ATAATGATTCCACCAAGTTGATGATA 1825
|||||| |||||||||||||||||||||| | | ||||||||||||| ||| | |||||
Sbjct 1712 TTCATCCTAAAGTAAGGTCTTCTAATAAGAC-TGATAATGATTCCACAAAGGCGGTGATA 1770
Query 1826 GTATTGTCCTCCACGGTGCTGGTTCTACTCGCAGTGGCTTCTTTCGTATTCGCTAAGAAG 1885
||||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1771 GTATTGTCCTCGACAGTGCTGGTTCTACTCGCAGTGGCTTCTTTCTTATTTGCTAAGAAG 1830
Query 1886 ACAAAACTCGTGGCTGCTACTAAACCAGCCCCTGAGAGTAACATGGAGCTAAACTTGAGT 1945
||||||| ||| ||| | |||||||| |||||||| | | |||||||||||||| ||
Sbjct 1831 ACAAAACCCGTAGCT-C--CTAAACCATACCCTGAGACCACCCTGGAGCTAAACTTGGGT 1887
Query 1946 CATGTGCCAGAAGAGAATCTGGTGAAAGAGAAGCTCTTTTCACTGAATTTTGAGGAAGAA 2005
|||||||||| | | ||||||| ||||||||||||||| |||||||||
Sbjct 1888 CATGTGCCAG-------T------A--GAGAAGCCCTTTTCACTGAATTTCGAGGAAGAA 1932
Query 2006 GTTGATGACAAAATGAGTAACAGTTTCCAAAAGAAGAGCTCATGCCACAAAGAACCTCAA 2065
|||||||||| |||||||||||||| ||| | ||| | | | | || | ||
Sbjct 1933 GTTGATGACAGAATGAGTAACAGTTACCATCA-AAG---T---G--A-AG-GAGGC--AA 1979
Query 2066 AGCAAAGGAGGCAAGAAGAATAACAACAATAGCAGTAGCAGCAAGTTGAGGAGAGAATCA 2125
| || | | || ||||||| || |||||| || | ||||||||||||||||
Sbjct 1980 -G-AA-GAAT--AACAAGAATAGCAG---TAGCAG---CA--A-GTTGAGGAGAGAATCA 2025
Query 2126 ATGGCATCTTCAGCATCAGAATACTCCATTGGCTCTTTTTCTTACGGAAGTTTCACAACA 2185
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 2026 ATGGCATCTTCAGCATCAGAATACTCTGTTGGCTCCTTCTCTTACGGAAGTTTCACAACG 2085
Query 2186 TACGAGAAGATACCCATCAAAAGTGGT-AGAGAAGAAGAGGAGATGATTACACCAGTGAG 2244
|||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||||||
Sbjct 2086 TACGAGAAAATACCCATCAAAAGTGGTGATAGA-GAAGAAGAGATGATTACACCAGTGAG 2144
Query 2245 ACGTTCAAGCCGGATTAAGAACAA 2268
||||||||||||||||| ||||||
Sbjct 2145 ACGTTCAAGCCGGATTAGGAACAA 2168
Score = 87.9 bits (47), Expect = 3e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1507 AACCGAAAAGAAGTTGGAAGAAACTGAATCTGAAGCTATCTACATAAACCAGC 1559
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1578 AACCAAAAAGAAGTTGGAAGAAACTGAATCTGAAGCTATCTACAAAAACCAGC 1630
> Ahg471862 jgi|Araly1|471862|fgenesh2_kg.1__1816__AT1G16630.1
Length=2663
Score = 235 bits (127), Expect = 1e-60
Identities = 191/222 (86%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 565 TCCTTCTGTTCCATATACA-TCTCCTGAGTTTGCAG-CTTGTGAAGTTGATACATTGTTG 622
||||||||||||||| ||| || |||| ||||| || || |||||| ||| | ||| ||
Sbjct 704 TCCTTCTGTTCCATACACATTC-CCTGTGTTTG-AGTCTCATGAAGTGGATCCTTTGGTG 761
Query 623 CCTCCTTATGATCCCAAGAAGAATTTTCTGTCGCCGAGGCCTCAGTTTCTTCATTATAAG 682
| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 762 GCACCTTATGATCCAAAGAAGAATTACCTGTCACCGAGGCCTCAGTTTCTTCATTATAAG 821
Query 683 CCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGTAAGCAGCTTGAGGAACTTTTCATC 742
|| ||||||||||| || | | |||||||||||| |||||||||||||| |||||||||
Sbjct 822 CCAAATCCAAGAATTGACCATCATTTTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATC 881
Query 743 TCTGAAAGCTCTTCTGATGACACTGAATTGTCTGTAGAAGAA 784
||||||||||||||| ||||||||| ||||||| ||| |||
Sbjct 882 TCTGAAAGCTCTTCTTCTGACACTGATTTGTCTGCAGAGGAA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94197175885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5