BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16280.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931800 jgi|Araly1|931800|scaffold_304257.1 2534 0.0
Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1 977 0.0
> Ahg931800 jgi|Araly1|931800|scaffold_304257.1
Length=1578
Score = 2534 bits (1372), Expect = 0.0
Identities = 1513/1582 (96%), Gaps = 5/1582 (0%)
Strand=Plus/Plus
Query 223 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCATTTTTCTCGGAAGCCATGGAAGCTGCTAATGAGCCTGTTAATGGCGGATCCGTAC 60
Query 283 AGATCCGAACAGAGAACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 342
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATCCGAAC--AG-ACAACGAAAGACGAAAGCTTCCTAATTTCTTACAAAGCGTCAACA 117
Query 343 TGAAATACGTCAAGCTAGGTTATCATTACCTCATTACTCATCTCTTCAAGCTCTGTTTGG 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 TGAAATACGTCAAGCTAGGTTATCATTATCTCATTACTCATCTCTTCAAGCTCTGTTTGG 177
Query 403 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACAACAGACGATCTTTACC 462
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 178 TTCCATTAATGGCGGTTTTAGTCACAGAGATCTCTCGATTAACCACTGACGATCTTTACC 237
Query 463 AGATTTGGCTTCATCTCCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCTA 522
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 AGATTTGGCTTCATCTTCAATACAATCTCGTTGCTTTCATCTTTCTCTCTGCTTTAGCCA 297
Query 523 TCTTTGGCTCCACCGTTTACATCATGAGTCGTCCCAGATCTGTTTATCTCGTTGATTACT 582
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 298 TTTTTGGCTCCACCGTTTATATCATGAGTCGTCCCAGATCCGTTTATCTCGTTGATTACT 357
Query 583 CTTGTTATCTTCCTCCGGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 642
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTGTTATCTTCCTCCAGAGAGTCTTCAGGTTAAGTATCAGAAGTTTATGGATCATTCTA 417
Query 643 AGTTGATTGAAGATTTCAATGAGTCATCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 702
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 AGTTAATTGAAGATTTCAATGAGTCTTCTTTAGAGTTTCAGAGGAAGATTCTTGAACGTT 477
Query 703 CTGGTTTAGGAGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGAGGCCTA 762
|||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 478 CTGGTTTAGGTGAAGAGACTTATCTCCCTGAAGCTTTACATTGTATCCCTCCGCGTCCGA 537
Query 763 CGATGATGGCGGCTCGTGAGGAATCTGAGCAGGTAATGTTTGGTGCTCTTGATAAGCTTT 822
||||||||||||| || |||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 538 CGATGATGGCGGCGCGGGAGGAAGCTGAGCAGGTAATGTTCGGTGCTCTCGATAAGCTTT 597
Query 823 TCGAGAATACCAAGATTAACCCTAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 882
||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 TCGAGAACACCGAGATTAACCCGAGGGATATTGGTGTGTTGGTTGTGAATTGTAGCTTGT 657
Query 883 TTAATCCTACACCTTCGTTGTCAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 942
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAATCCTACACCTTCGTTATCTGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATG 717
Query 943 TTAAGAGTTTTAACCTTGGTGGAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAG 1002
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 718 TTAAGAGTTTTAATCTTGGTGGAATGGGGTGTAGTGCGGGTGTTATCGCTATCGATTTAG 777
Query 1003 CTAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACA 1062
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 778 CGAAAGATATGTTGCAAGTTCATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAATA 837
Query 1063 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTC 1122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 TTACTCAGAATTGGTATTTTGGGAATAAGAAGGCAATGTTGATTCCGAATTGTTTGTTTC 897
Query 1123 GTGTTGGTGGTTCGGCGATTTTGTTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGT 1182
| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 898 GGGTTGGTGGTTCGGCGATTTTGTTGTCGAATAAGGGTAAGGATCGTAGACGGTCTAAGT 957
Query 1183 ATAAGCTTG-TTCATACCGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAACTGT 1241
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 ATAAG-TTGGTTCATACGGTTAGGACTCATAAAGGAGCTGTTGAGAAGGCTTTCAATTGT 1016
Query 1242 GTTTACCAAGAGCAAGATGATAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATG 1301
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1017 GTTTACCAAGAACAGGATGATAATGGGAAGACCGGGGTTTCTTTGTCGAAAGATCTTATG 1076
Query 1302 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTAGGTCCTTTGGTTCTTCCT 1361
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 GCTATAGCTGGGGAAGCTCTTAAGGCGAATATCACTACTTTGGGTCCTTTGGTTCTTCCT 1136
Query 1362 ATAAGTGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAACTGTTTAACTCGAAG 1421
||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1137 ATAAGCGAGCAGATTCTGTTTTTCATGACTTTGGTTACGAAGAAATTGTTTAACGCTAAG 1196
Query 1422 CTGAAGCCGTATATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGT 1481
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 CTGAAGCCGTATATCCCGGATTTCAAGCTTGCGTTCGATCATTTCTGTATCCATGCTGGT 1256
Query 1482 GGTAGAGCTGTGATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGCAGACTCATGTCGAG 1541
||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||
Sbjct 1257 GGTAGAGCTGTGATTGATGAGCTAGAGAAGAATCTGCAGCTTTCTCAGACACACGTCGAG 1316
Query 1542 GCATCCAGAATGACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAA 1601
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1317 GCATCGAGAATGACACTGCACAGATTTGGAAACACATCATCGAGCTCGATTTGGTATGAA 1376
Query 1602 CTGGCTTACATAGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1661
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1377 CTGGCTTACATAGAGGCCAAAGGTAGAATGAAGAAAGGAAACCGGGTTTGGCAGATTGCT 1436
Query 1662 TTTGGAAGTGGGTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCT 1721
|||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||
Sbjct 1437 TTTGGAAGTGGGTTTAAGTGTAACAGCGCGGTTTGGGTGGCTCTGCACAATGTTAAGCCT 1496
Query 1722 TCGGTTAGTAGTCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1781
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1497 TCGGTTAGTAGTCCATGGGAACACTGTATCGACCGATATCCGGTTAAGCTCGACTTCTGA 1556
Query 1782 TTTAATGAAAAACCATTTGTTT 1803
|||||| |||||||||||||||
Sbjct 1557 TTTAATCAAAAACCATTTGTTT 1578
> Ahg491207 jgi|Araly1|491207|fgenesh2_kg.7__640__AT4G34510.1
Length=1485
Score = 977 bits (529), Expect = 0.0
Identities = 1058/1310 (81%), Gaps = 49/1310 (4%)
Strand=Plus/Plus
Query 498 TTCATCTTTC-TC-TCTGCTTTAGCTATCTTTGGCTCCACCGT-TTACATCATGAGTCGT 554
|||||| ||| || || || || ||||| || || |||| || || | ||||| |||
Sbjct 178 TTCATC-TTCATCATC-GCCTTCGCTATATTAGGGTCCATTGTCTT-CTTCATGTCTCG- 233
Query 555 CCC-AGATCTGTTTATCTCGTTGATTACTCTTGTTATCTTCCTCCGGAGAGTCTTCAGGT 613
||| ||||| |||| ||| |||||||||| || || || || ||| || || | ||
Sbjct 234 CCCTAGATCCATTTACCTCCTTGATTACTCCTGCTACCTCCCGCCGTCGAATCAAAAAGT 293
Query 614 TAAG-TATCAGA-AGTTTATGGATCATTCTAAG-TTGATTGAAGATTTCAATGAGTCATC 670
| || || |||| | || ||| || ||||| || |||||| ||||||||| || || ||
Sbjct 294 T-AGCTACCAGACA-TTCATGAATAATTCT-AGCTTGATTCAAGATTTCAGCGAATCTTC 350
Query 671 T-TTAGAGTTTCAGAGGAAGATTCTTGA-ACGTTCTGGTTTAGGAGAAGAGACTTATCTC 728
| || ||||| |||||||||| |||||| || || ||| | || |||||||||||| |
Sbjct 351 TCTT-GAGTTCCAGAGGAAGA-TCTTGATTCGGTCCGGTCTCGGTGAAGAGACTTATTTA 408
Query 729 CCTGAAG-CT-TTACATTGTATCCCTCCGAGGCCTACGAT-GATGGCGGCTCGTGAGGAA 785
|| | || || || || ||||| |||||| | || || || | | ||||| ||||| |||
Sbjct 409 CC-GGAGTCTATT-CACTGTATTCCTCCGCGTCCGACTATGGCT-GCGGCGCGTGAAGAA 465
Query 786 TCTGAGCAGGTAATGTTTGGTGCTCTTGATAAG-CTTTTCGAGAATACCAAGATTAACCC 844
| ||||||||||| || ||||| || || || || |||||||||||||| || || ||
Sbjct 466 GCAGAGCAGGTAATCTTCGGTGCACTCGA-CAGTCTCTTCGAGAATACCAAAATCAATCC 524
Query 845 TAGGGATATTGGTG-TGTTGGTTGTGAATTGTAGCTTGTTTAATCCTACACCTTCGTTGT 903
|||||| ||||||| | || |||||||||||||| |||||||| ||||| ||||| || |
Sbjct 525 TAGGGAGATTGGTGTTCTT-GTTGTGAATTGTAGTTTGTTTAACCCTACGCCTTCTTTAT 583
Query 904 CAGCTATGATTGTTAACAAGTATAAGCTTAGAGGGAATGTTAAGAGTTTTAACCTTGGTG 963
| || |||||||||||||||||||||||||||| ||| | ||||| ||||||||||| |
Sbjct 584 CCGCCATGATTGTTAACAAGTATAAGCTTAGAGTGAACATCAAGAGCTTTAACCTTGGAG 643
Query 964 GAATGGGGTGTAGTGCTGGTGTTATCTCTATCGATTTAGCTAAAGATATGTTGCAAGTTC 1023
||||||| |||||||||||||||||| |||| ||| | || | || ||||| ||| | |
Sbjct 644 GAATGGGATGTAGTGCTGGTGTTATCGCTATTGATCTCGCCAGTGACATGTTACAAATCC 703
Query 1024 ATAGGAATACTTATGCTGTTGTGGTTAGTACTGAGAACATTACTCAGAATTGGTATTTTG 1083
||||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 704 ATAGGAACACTTTTGCTCTTGTGGTTAGTACTGAGAACATCACTCAGAACTGGTATTTTG 763
Query 1084 GGAATAAGAAGGCTATGTTGATTCCGAATTGTTTGTTTCGTGTTGGTGGTTCGGCGATTT 1143
| || || || || |||||||| || ||||| |||||| | |||||||| || ||| ||
Sbjct 764 GTAACAACAAAGCAATGTTGATCCCTAATTGCTTGTTTAGAGTTGGTGGATCCGCGGTTC 823
Query 1144 TG-TTGTCGAACAAGGGGAAAGATCGTAGACGGTCTAAGTATAAGCTTGTTCATACCGTT 1202
|| || ||||||||| ||||| | ||| || |||||||||||||||||||| ||
Sbjct 824 TGCTT-TCGAACAAGCCTTTGGATCGAAAACGATCCAAGTATAAGCTTGTTCATACGGTG 882
Query 1203 AGGACTCATAAAGGAGCTGTTGAGAAGGC-TTTCAACTGTGTTTACCAAGAGCAAGATGA 1261
||||||||||||||| ||| |||||| || ||| || ||||| |||||||| ||||||||
Sbjct 883 AGGACTCATAAAGGATCTGATGAGAAAGCATTT-AAGTGTGTGTACCAAGAACAAGATGA 941
Query 1262 -TAATGGGAAGACCGGGGTTTCGTTGTCGAAAGATCTTATGGCTATAGCTGGGGAAGCTC 1320
| | | || ||||| ||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 942 GTGTTTGAAA-ACCGGAGTTTCTTTGTCTAAAGATCTTATGGCTATAGCCGGAGAAGCT- 999
Query 1321 TTAAGG-CGAATATCACTACTTTAGGTCCTTTGGTTCTTCCTATAAGTGAGCAGATTCTG 1379
|||| | ||||||||||||| || |||||| |||||||||||||||| ||||||||||||
Sbjct 1000 TTAAAGACGAATATCACTACGTTGGGTCCTCTGGTTCTTCCTATAAGCGAGCAGATTCTG 1059
Query 1380 TT-TTT-CATGACTTTGGTTACGAAGAAACTGTTT-AAC-TCGA--AGCTGAAGCCGTAT 1433
|| ||| | | |||| ||| | |||| | | ||| || || | || |||||| ||
Sbjct 1060 TTCTTTGCG-G-CTTTTGTTGCTAAGAGATT-TTTCAATGTCAAGGAGAAGAAGCCTTAC 1116
Query 1434 ATTCCGGATTTCAAGCTTGCGTTTGATCATTTCTGTATCCATGCTGGTGGTAGAGCTGTG 1493
|| ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||
Sbjct 1117 ATACCGGATTTCAAGCTTGCATTTGATCATTTCTGTATTCACGCGGGAGGTAGAGCCGTG 1176
Query 1494 ATTGATGAGCTTGAGAAGAATCTGCAGCTTTCGC-AGACTCATGTCGAGGCATCCAGAAT 1552
|| |||||||| ||||||||| | ||||||||| | | ||||||||||| || |||||
Sbjct 1177 ATCGATGAGCTAGAGAAGAATTTAAAGCTTTCGCCAAAA-CATGTCGAGGCGTCTAGAAT 1235
Query 1553 GACACTGCACAGATTTGGAAACACTTCTTCGAGCTCGATTTGGTATGAACTGGCTTACAT 1612
|||| |||| ||||||||||||||||| || ||||| || ||||||||| |||| ||||
Sbjct 1236 GACATTGCATAGATTTGGAAACACTTCCTCTAGCTCTATATGGTATGAATTGGCGTACAC 1295
Query 1613 AGAGGCTAAAGGTAGGATGAAGAAAGGAAACCGGGTTTGGCAGATTGCTTTTGGAAGTGG 1672
|| |||||||| || |||| |||||| ||| ||||||||||||||||||||||||| ||
Sbjct 1296 GGAAGCTAAAGGAAGAATGAGGAAAGGGAACAGGGTTTGGCAGATTGCTTTTGGAAGCGG 1355
Query 1673 GTTTAAGTGTAACAGTGCAGTTTGGGTGGCTCTAAACAATGTCAAGCCTTCGGTTAGTAG 1732
||||||||||||||| ||||||||||||||||| | |||||||||| ||||||| |
Sbjct 1356 GTTTAAGTGTAACAGCGCAGTTTGGGTGGCTCTTCGCGATGTCAAGCCCTCGGTTAACAA 1415
Query 1733 TCCGTGGGAACACTGCATCGACCGATATCCGGTTAAGCTCGA-CTTCTGA 1781
||| |||||||| |||||| | |||||||||||||| |||| ||| |||
Sbjct 1416 TCCTTGGGAACATTGCATCCATAGATATCCGGTTAAGATCGATCTT-TGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5