BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16290.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 974 0.0 > Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 Length=906 Score = 974 bits (527), Expect = 0.0 Identities = 741/842 (88%), Gaps = 24/842 (3%) Strand=Plus/Plus Query 106 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 162 ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135 Query 163 ATATCGTTCAATGCCGGTTTTACGTTCAGCGATCAACCAACGGATCAACCTCCGTTTAAA 222 ||| ||||||||||||| || || || | | | |||| |||||||||||||| Sbjct 136 ATACCGTTCAATGCCGG-CTT---TT---CG-T-TA-C-ACGG-CCAACCTCCGTTTAAT 183 Query 223 AGTAGTGTTGATTGCACACTAAAAAACATCCCAATTTATCTTGTGAAATTCTGGACTCCG 282 || ||| | | |||||||||||| | ||| | ||||||| |||| |||| |||||| Sbjct 184 AGCGGTGATAAATGCACACTAAAACAGATCTCTGTTTATCTCGTGAGATTCCAGACTCCA 243 Query 283 TATGGTGATGATTATTTAATAGCAGAGATGCGTGA-ACGAGAGGGTGGGGAACCGAAGTT 341 | ||||||||||||| || | |||||||||||||| | ||||| || |||||| | ||| Sbjct 244 TTTGGTGATGATTATCTATTGGCAGAGATGCGTGAGA-GAGAGTTTGAGGAACCCATGTT 302 Query 342 ATTGTTGTCGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGTT 401 | ||||||||||||||||||||||| |||| ||||||||| | |||||| |||||||||| Sbjct 303 AATGTTGTCGCCCTTGTCATCTAATGGTATCATATATGGATTTGGAATATATAAAGTGTT 362 Query 402 GTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACTT 461 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 363 GTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTACTT 422 Query 462 TAAGAAGCAACCCATTCGTTACCGCTATGGATTACCCTATCATTTATGGAATGAAGTAGA 521 ||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||| Sbjct 423 CGAGATGCAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGA 482 Query 522 GTGGGTAGAGACTTCCGAGAGAGTTGAATTTCTTAGACTGCATAGTGAAGATAGCAGAGA 581 ||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||| Sbjct 483 TTGGGTGGAGACTTCCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGA 542 Query 582 TTTTGCGGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACAT 641 ||||||||||||| ||| |||| ||| | |||||||||||||||||||||||||||||| Sbjct 543 TTTTGCGGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACAT 602 Query 642 GAGTTGGACTCAAGTTGTGGAGCATCCTGAAACGTATGCATATCAAGATTTGGTTGCATT 701 ||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||| Sbjct 603 GAGTTGGACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATT 662 Query 702 CAAAGGAAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGTGTCTTTGTTGTCGAACT 761 ||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||| Sbjct 663 CAAAGGAAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACT 722 Query 762 TTCTTTGAGA-GTTACGGAGATCCCCTCAGTCAAAGGATCGCAATATTGTTCTAAAGAAA 820 ||||||| || |||||||||||||||||||||| |||||||||| | | ||||||||||| Sbjct 723 TTCTTTG-GAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAA 781 Query 821 GTCTGGTGCAGTTAGGCGAAGAGTTGTTGCTAGTGCAACGGTTCATACCTGCAGGGCGGC 880 |||| |||| || |||||| ||||||||||||||||||||||||| ||| |||| ||| Sbjct 782 GTCTAGTGCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACC---AGGGTGGC 838 Query 881 GTTATGATGAATATATATATA--CATGGTTCAAAGTGTTTAGACTTGATGAAGAAGGAGG 938 || ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 839 GTCATGGTGAATATATATATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGG 898 Query 939 GA 940 || Sbjct 899 GA 900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5