BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16290.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 974 0.0
> Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848
Length=906
Score = 974 bits (527), Expect = 0.0
Identities = 741/842 (88%), Gaps = 24/842 (3%)
Strand=Plus/Plus
Query 106 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 162
||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135
Query 163 ATATCGTTCAATGCCGGTTTTACGTTCAGCGATCAACCAACGGATCAACCTCCGTTTAAA 222
||| ||||||||||||| || || || | | | |||| ||||||||||||||
Sbjct 136 ATACCGTTCAATGCCGG-CTT---TT---CG-T-TA-C-ACGG-CCAACCTCCGTTTAAT 183
Query 223 AGTAGTGTTGATTGCACACTAAAAAACATCCCAATTTATCTTGTGAAATTCTGGACTCCG 282
|| ||| | | |||||||||||| | ||| | ||||||| |||| |||| ||||||
Sbjct 184 AGCGGTGATAAATGCACACTAAAACAGATCTCTGTTTATCTCGTGAGATTCCAGACTCCA 243
Query 283 TATGGTGATGATTATTTAATAGCAGAGATGCGTGA-ACGAGAGGGTGGGGAACCGAAGTT 341
| ||||||||||||| || | |||||||||||||| | ||||| || |||||| | |||
Sbjct 244 TTTGGTGATGATTATCTATTGGCAGAGATGCGTGAGA-GAGAGTTTGAGGAACCCATGTT 302
Query 342 ATTGTTGTCGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGTT 401
| ||||||||||||||||||||||| |||| ||||||||| | |||||| ||||||||||
Sbjct 303 AATGTTGTCGCCCTTGTCATCTAATGGTATCATATATGGATTTGGAATATATAAAGTGTT 362
Query 402 GTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACTT 461
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 GTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTACTT 422
Query 462 TAAGAAGCAACCCATTCGTTACCGCTATGGATTACCCTATCATTTATGGAATGAAGTAGA 521
||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 423 CGAGATGCAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGA 482
Query 522 GTGGGTAGAGACTTCCGAGAGAGTTGAATTTCTTAGACTGCATAGTGAAGATAGCAGAGA 581
||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 483 TTGGGTGGAGACTTCCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGA 542
Query 582 TTTTGCGGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACAT 641
||||||||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct 543 TTTTGCGGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACAT 602
Query 642 GAGTTGGACTCAAGTTGTGGAGCATCCTGAAACGTATGCATATCAAGATTTGGTTGCATT 701
||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||
Sbjct 603 GAGTTGGACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATT 662
Query 702 CAAAGGAAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGTGTCTTTGTTGTCGAACT 761
||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||
Sbjct 663 CAAAGGAAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACT 722
Query 762 TTCTTTGAGA-GTTACGGAGATCCCCTCAGTCAAAGGATCGCAATATTGTTCTAAAGAAA 820
||||||| || |||||||||||||||||||||| |||||||||| | | |||||||||||
Sbjct 723 TTCTTTG-GAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAA 781
Query 821 GTCTGGTGCAGTTAGGCGAAGAGTTGTTGCTAGTGCAACGGTTCATACCTGCAGGGCGGC 880
|||| |||| || |||||| ||||||||||||||||||||||||| ||| |||| |||
Sbjct 782 GTCTAGTGCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACC---AGGGTGGC 838
Query 881 GTTATGATGAATATATATATA--CATGGTTCAAAGTGTTTAGACTTGATGAAGAAGGAGG 938
|| ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 839 GTCATGGTGAATATATATATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGG 898
Query 939 GA 940
||
Sbjct 899 GA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5