BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16310.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319835 jgi|Araly1|319835|fgenesh1_pm.C_scaffold_3002851 536 1e-151
> Ahg319835 jgi|Araly1|319835|fgenesh1_pm.C_scaffold_3002851
Length=582
Score = 536 bits (290), Expect = 1e-151
Identities = 334/356 (94%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGGAGTTGGAGGTGACGCTGCTTCAATGGCATCATCACCTGTACAACAACGAGCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGGGAGTTGGAGGTGACGCTGCTTCAATGGCATCATCACCTGTACAACAACGTGCG 60
Query 61 AATGAGGCGTGGAGGCTGTATCAGTATTACTTAGACAAGACTAAGCCTCACGCGGTTAAT 120
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AATGAGGCGTGGAGACTGTATCAGTATTACTTAGACAAGACTACGCCTCACGCGGTTAAT 120
Query 121 AGGTGGATCGGGACTCTTGTGATTGTTGTGATATACTGTTTGAGGGTTTTCTATGTTCAA 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AGGTGGATCGGGACTCTTGTGATTGCAGTGATATACTGTTTGAGGGTTTTCTATGTTCAA 180
Query 181 GGGTTCTTTATCGTTTCTTTTGCCTTGGGGCTTTATGTTCTGAACTAGTTGACTGGGTTT 240
|| |||| |||| |||||| ||| |||||| ||||||||||||||| | ||| |||||||
Sbjct 181 GGCTTCTATATCATTTCTTATGCGTTGGGGATTTATGTTCTGAACTTGCTGATTGGGTTT 240
Query 241 TTATCACCACTTGTTGATCCTGAGCTTGATACGTCTGATGGTCCAATGTTACCCAAAAAA 300
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 241 TTATCGCCACTGGTTGATCCTGAGCTTGATGCGTCTGATGGTCCAATGTTACCCACAAAA 300
Query 301 GGTTCAGATGAGTTCAAGCCATTCATCCGTTGGCTTCCAGAGTTTAAGTTCTGGTA 356
||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||
Sbjct 301 GGTTCAGATGAGTTCAAACCATTCATCCGTCGACTTCCAGAGTTCAAGTTCTGGTA 356
Score = 75.0 bits (40), Expect = 1e-12
Identities = 48/51 (94%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 925 AAATATGGAGGGAAGAAAGCTTCTGGCAGCAGCAGCTCTCGCGCAGACTGA 975
|||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 535 AAATATGGAGGGAAGAAAGCTTCTGGCAGCAG--G-TCTCGCGCAGACTGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5