BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G16360.1

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931813 jgi|Araly1|931813|scaffold_304270.1                        339    1e-92
  Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2          219    2e-56


> Ahg931813 jgi|Araly1|931813|scaffold_304270.1
Length=291

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 246/275 (89%), Gaps = 9/275 (3%)
 Strand=Plus/Plus

Query  38   TGGTTTCTCT-GACTGATTCCAGGCACCAAAGAAGGACAAAGTCCCACCACCATCCTCTA  96
            |||||||||| | |||||||||||||||||||||||| ||||| |||||| |||| ||||
Sbjct  24   TGGTTTCTCTCG-CTGATTCCAGGCACCAAAGAAGGATAAAGTTCCACCAACATCTTCTA  82

Query  97   AACCCGCCAAATCCGGTGGCGGAAAGCAGAAAAAGAAGCAAAGGAAAGCAAAAGGAGAAG  156
            |||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  83   AACCAGCTAAATCAGGTGGCGGCAAGCAGAAAAAGAAGCAAAGGAAAGCAAAAGGAGAAA  142

Query  157  GTGAACAACATGGTTCTGTTCGATCAAGCAACTTACGACAAGCTTATGTCTGAAGCTCCT  216
            |||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| 
Sbjct  143  GTGAACAATATGGTTCTGTTTGACCAAGCAACTTATGACAAGCTTATGTCTGAAGCTCCC  202

Query  217  AAGTTCAAATTGATCACTCCTTCGATTCTCTCTGACCGTCTTCGGATCAATGGGTCGCTT  276
            ||||| ||||||||||||||||| |||||||||||| |     | |||||||||||||||
Sbjct  203  AAGTTTAAATTGATCACTCCTTCTATTCTCTCTGAC-G-----G-ATCAATGGGTCGCTT  255

Query  277  GCTAGAAAGGCGATAAGAGATTTGATGGTGAAAGG  311
            || || ||||||||||||||| |||||| ||||||
Sbjct  256  GCAAGGAAGGCGATAAGAGATCTGATGGCGAAAGG  290


> Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2
Length=576

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 246/307 (80%), Gaps = 11/307 (4%)
 Strand=Plus/Plus

Query  59   GGCACCAAAGAAGGACAAAGTCCCACCACCATCCTCTAAA-CCCGCCAAATCCGGTGGCG  117
            ||| || |||||||| || || || |||||||| || ||| || || |||||||| || |
Sbjct  112  GGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATC-AAAGCCGGCGAAATCCGGAGGTG  170

Query  118  GAAAGCAG-A-AA-AA--GAAGCAAAGGAAAGCAAAAGGAGAAGGTGAACAACATGGT-T  171
            |||||||| | || ||  | ||||| |||||||||||||||||||||||||||||||| |
Sbjct  171  GAAAGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGT  230

Query  172  CTGTTCGATCAAGCAACTTACGACAAGCTTATGTCTGAAGCTCCTAAGTTCAAATTGATC  231
             |||| |||||||| ||||| ||||||||| |  |||||||||| || |||||  | |||
Sbjct  231  -TGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAATTCAAGCTCATC  289

Query  232  ACTCCTTCGATTCTCTCTGACCGTCTTCGGATCAATGGGTCGCTTGCTAGAAAGGCGATA  291
            || ||||| ||||||||||||||| |  |||| ||||||||||| || || | |||||| 
Sbjct  290  ACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCGCTAGCAAGGAGGGCGATT  349

Query  292  AGAGATTTGATGGTGAAAGGCACGATAAGGATGGTTTCTACTCACTCAAGTCAGCAGAT-  350
            || ||  | ||||  |||||   ||| ||||||||  || ||||||| || |||||||| 
Sbjct  350  AGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGAGCCAGCAGATC  409

Query  351  TAACACT  357
            || ||||
Sbjct  410  TA-CACT  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13507078506


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5