BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16365.1
Length=2805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480799 jgi|Araly1|480799|fgenesh2_kg.3__3500__AT2G16365.2 1984 0.0
Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848 918 0.0
> Ahg480799 jgi|Araly1|480799|fgenesh2_kg.3__3500__AT2G16365.2
Length=1640
Score = 1984 bits (1074), Expect = 0.0
Identities = 1334/1456 (92%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 50 TTCTTTGGACAGTGTACCTCCACGTATTCGTCTCTGGTGATTTAATCAAAGCCTCTGGAG 109
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTCTTTGGACAGTTTACCTCCACGTATTCGTCTCTGGTGATTTGATCAAAGCCTCTGGAG 60
Query 110 AAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAA 169
||||||| | ||| ||| |||||||||| | ||||||||||||||||| |||||||||
Sbjct 61 AAGATCTCT--GTAGGTA-TAATGTCTGAAGAGGTTATGGTTTTGGGTAAGGGTAACAAA 117
Query 170 GGAATCAGCAAGAATTCTTCAGTCAATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 229
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 118 GGAATCAGCAAGAATTCCTCAGCCCATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 177
Query 230 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTG-AGACCAATTGCTCTAAGCAGTTGAT 288
|||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||||
Sbjct 178 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTGAAG-CCAACTGCTCTAAGGAGTTGAT 236
Query 289 AAGACCTGAAGATGAGAATCATGGAGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 348
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 TAGGCCTGAAGAAGAGAATCATGGTGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 296
Query 349 TCAAAAGAGAGAGactactactactactactactaAACCGTCTTTCCATGAAGATGTTGG 408
||||||||||||| ||||||||||| ||||||||||||| ||||| ||
Sbjct 297 TCAAAAGAGAGAG------------ACTACTACTAAGCCGTCTTTCCATGGTGATGTGGG 344
Query 409 TTCAAGCTCGAGAGCTATGGTTAATAGAATGCCCTGGATGTATCCGCAAGGAGAGAACTT 468
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 345 TTCAAGCTCGAAAGCTATGGTTAATAGAATGCCATGGATGTATCCGCAAGGAGAGAATTT 404
Query 469 CAGTTCTAGTAACCGTCTTGACTTCCCAATTCAAGAAAAGACTACTCAAAACTTGCTAGA 528
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 405 CAGTTCGAGTAACCGTCTTGATTTCCCAGTTCAAGAAAAGACTACTCAAAACTTGCTAGA 464
Query 529 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCTGTTAACTTGCCTAAAGAAGA 588
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 465 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCGGTTAACTTGCCTGAAGAAGA 524
Query 589 TAGTCATCAGTTATTGAAGGGGTCTACAGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 648
| |||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 525 TGGTCATCAGCTGTTGAAGGGGTCGACGGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 584
Query 649 TGGATATCTTGATCTGTTTCCTAATCAAGATCACTCCCACAATAGAGGAGGAGTAAGGCT 708
||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||| ||||||
Sbjct 585 TGGGTATCTTGATCTATTTCCTAATCAAGATCACTGCCATAATAAAGGAGGAGCAAGGCT 644
Query 709 GCAGTCTCTAGAAAGCTCAAAGGATACTC-AAGAAGATGGACCGAGAAAAAATGAATCAT 767
||||||||||||||||||||| || || | |||||||||| |||||||||||||||||||
Sbjct 645 GCAGTCTCTAGAAAGCTCAAAAGACAC-CGAAGAAGATGGGCCGAGAAAAAATGAATCAT 703
Query 768 CGGCAGAGACTAATACCTTAGAAATGGATAGACTTCAGACTATACATCTTTCCGGCTCCA 827
| ||||| ||| ||||||| |||||||||||||||||||| |||||| |||| |||||||
Sbjct 704 CTGCAGAAACTGATACCTTGGAAATGGATAGACTTCAGACGATACATATTTCTGGCTCCA 763
Query 828 TTTCTTCGTCATCAACTAAGGGAAAAGGAATAAAAGGCT-ACTCAGCCATTCCAAGGACC 886
|||||||||| ||||||||||| |||||||||||||| | | ||||||||||| ||||||
Sbjct 764 TTTCTTCGTCGTCAACTAAGGGCAAAGGAATAAAAGG-TGATTCAGCCATTCCCAGGACC 822
Query 887 GAAATACCTGACATGAATGAAGAACCACCTCTTG-TTCCGGATAGAGAGAATTCAGTAGA 945
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 823 GAAATACCCGACATGAATGAAGAACCACCT-TTGGTTCCGGATAGAGAGAATTCAGTAGA 881
Query 946 TGGACATCAGGGAGAAACAAGCAACTCGGCTACTCAAAGTATGAATGTGGAACACTTTCT 1005
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 882 TGGACATCAGGGAGAAACAAGCAATTCAGCTACTCAAAGTATGAATGTGGAACACTTTCT 941
Query 1006 GTCCAGAGATTGCAAACGTGTGCGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1065
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 942 GTCCAGAGACTGCAAACGTGTGAGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1001
Query 1066 CAAGCGTCTGAAGACAAGCCCCTCAGAT-TCCAGT-GAAACCAAGAG-C-ATGA-T--GA 1118
|||||||||||| |||||| |||| || ||||| || | | || | | || | ||
Sbjct 1002 CAAGCGTCTGAAAACAAGCGCCTC-GACCTCCAGCAGACATGATGAAACCAAGAGTCTGA 1060
Query 1119 AGATGAAAGAAGCATCACTGGGAGAAAAAGAGAACAATAATCTATTCCTTGAGATCTTGA 1178
| || |||||||||||||||||| |||||| ||| ||||| ||||||||||| |||||||
Sbjct 1061 ATATTAAAGAAGCATCACTGGGACAAAAAGGGAATAATAACCTATTCCTTGAAATCTTGA 1120
Query 1179 AGTCCGGAATCAACAATCTCCAACCGAGAAATCAAGAACCCGTCGTTTCACAGAGCAATG 1238
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1121 AGTCTGGAATCAACAATCTCCAACCAAGAAATCAAGAACCCGTCGTTTCACAAAGCAATG 1180
Query 1239 ATCTGAGACAAGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGGTGGTGCA 1298
|||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1181 ATCTGAAACAGGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGATGGTGCA 1240
Query 1299 AGAAGAAAACTACATCAACAGATCAACCAACAGGGCAAGAAGCTAGCTTTGAGCCAGAGA 1358
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1241 AGAAGAAATCTACATCAACAGATCAACCAGGAGGGCAAGAAGTTAGCTTTGAGCCAGAGA 1300
Query 1359 GTCACAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1418
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GCCAGAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1360
Query 1419 AGGCTCTGAGCGGTTTAAACCCATATGGTCTTAGAAAGACCAACTCTCTCATGGTTTGGA 1478
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1361 AGGCTCTGAGCGGTTTAAACCCATATGGTCTGAGAAAAACCAACTCTCTCATGGTCTGGA 1420
Query 1479 ATGCAAGGGATTTGAG 1494
||||||||||||||||
Sbjct 1421 ATGCAAGGGATTTGAG 1436
> Ahg319832 jgi|Araly1|319832|fgenesh1_pm.C_scaffold_3002848
Length=906
Score = 918 bits (497), Expect = 0.0
Identities = 728/833 (87%), Gaps = 41/833 (5%)
Strand=Plus/Plus
Query 1634 CGGTCTGTTGTACCTCCACTAG---ATCATTCCCGCTGCTTAGGTATCAAAACTCATGAT 1690
||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 76 CGGTCCGTTATACCTCCACTAGATCATCATTCCCGCTGTTTAGGTATCAAAACTCATGAT 135
Query 1691 ATATCGTTCAATGTCGGCTTTTCGTTCA-ACGGCCGACCAACG---AAT----G-AAT-A 1740
||| ||||||||| |||||||||||| | |||||| ||| || ||| | || |
Sbjct 136 ATACCGTTCAATGCCGGCTTTTCGTT-ACACGGCCAACCTCCGTTTAATAGCGGTGATAA 194
Query 1741 TTGCACACTAAAAAAGATTC-CAATATATCTCGTGAAATTCTGGACTCCGTTTGGTGATG 1799
|||||||||||| ||| || | | |||||||||| |||| |||||| ||||||||||
Sbjct 195 ATGCACACTAAAACAGA-TCTCTGTTTATCTCGTGAGATTCCAGACTCCATTTGGTGATG 253
Query 1800 ATTATCTATTGGCAGAGATGCGTGA-ACGA-AATGATGGGGAACCGAAGTTATTGTTGTC 1857
||||||||||||||||||||||||| | || | | || |||||| | |||| |||||||
Sbjct 254 ATTATCTATTGGCAGAGATGCGTGAGA-GAGAGT-TTGAGGAACCCATGTTAATGTTGTC 311
Query 1858 GCCCTTGTCATCTAATGGTATCA-AGTATGGAATGGGAATAAATAAAGTGTTGTTCAACT 1916
||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||||||
Sbjct 312 GCCCTTGTCATCTAATGGTATCATA-TATGGATTTGGAATATATAAAGTGTTGTTCAACT 370
Query 1917 CTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACATT-GAGAAG 1975
||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
Sbjct 371 CTCTTACCTCACCAATTATCCCATTTGGACATTACTACGAGATAACCTAC-TTCGAGATG 429
Query 1976 CGACCCAGTGAATACCGCTTTGGATTTCCC--T-A--TA----A---ACTAGAGTGGGTG 2023
| || || | | ||||||| |||||| ||| | | || | | |||| ||||||
Sbjct 430 CAACACATTCATTACCGCTATGGATTACCCTATCATTTATGGGATGGAGTAGATTGGGTG 489
Query 2024 GAGA-TTACCGAGAGAGTTGAATTTCTTAAACTGGATAGTGAAGATAGCAGAGATTTTGC 2082
|||| || |||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 490 GAGACTT-CCGAGAGAGTTGCATTTCTTAAACTGCATAGTGAAGATCGCAGAGATTTTGC 548
Query 2083 GGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 2142
||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 549 GGTGCTTCTTGATGGAGGAACGACCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTG 608
Query 2143 GACTCAAGTTGTGGAGCATCCTGAAAAGTATGCATATCAAGATTTGGTTGCATTCAAAGG 2202
||||||||||||||| |||||||||| || | ||||||||||| ||||||||||||||||
Sbjct 609 GACTCAAGTTGTGGACCATCCTGAAACGTGTTCATATCAAGATATGGTTGCATTCAAAGG 668
Query 2203 AAAGTTTTATGCTGTTGATTCAAGTGGAAGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 2262
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 669 AAAGTTTTATGTTGTTGATTCAAGTGGATGGGGACGGGTCTTTGTTGTCGAACTTTCTTT 728
Query 2263 CGAAGTTACGGAGATCCCCTCAGTCGGAGGATCGCAACAGTCTTCTAAAGAAAGTCTGGT 2322
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 729 GGAAGTTACGGAGATCCCCTCAGTCAGAGGATCGCAAGAGTCTTCTAAAGAAAGTCTAGT 788
Query 2323 GCAGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCTGTTGGGCGGCGTTATGA 2382
|| ||||||||||||||||||||||||||||||||||||||| | || ||||| |||
Sbjct 789 GCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACACCAG--GGT-GGCGTCATGG 845
Query 2383 TGAatatatatatataCATGGTTCAGAGTGTTTAGACTTGATGAAGAAAGAGG 2435
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 846 TGAATATATATATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAAGGAGG 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105852790855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5