BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16370.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480800 jgi|Araly1|480800|fgenesh2_kg.3__3501__AT2G16370.1 2610 0.0
Ahg888609 jgi|Araly1|888609|Al_scaffold_0007_595 1596 0.0
> Ahg480800 jgi|Araly1|480800|fgenesh2_kg.3__3501__AT2G16370.1
Length=1837
Score = 2610 bits (1413), Expect = 0.0
Identities = 1734/1880 (92%), Gaps = 57/1880 (3%)
Strand=Plus/Plus
Query 1 CTCAAAGATTCTTCCTTTCTCCTTTAAATCGTCTCTGCTTTGGCTTTGTACTAGCCATCG 60
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CTCAAAGATTCTTCCTTTCGCCTTTAAATCGTCTCTGCTTTGGCTTTGTAATAGCCATCG 60
Query 61 CAATTCATCATCATCTATTGCAAG--T-ATCTCCAAGGTTTTGATTTCCACAATGGCAAC 117
| | ||| ||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 61 C-A---ATC--CATCTATTGCAAGTATCATCTCCAAGGTTTTGATTTCCACCATGGCAAC 114
Query 118 AACTACTCTCAATGACAGTGTCACCACTACACTTGCTTCAGAGCCTCAAAGGACTTACCA 177
||| ||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||
Sbjct 115 AACAACTCTAAATGGCAATGACACTACTAGACTTGCTTCAGAGCCTCAAAGGACTTACCA 174
Query 178 AGTTGTTGTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAATTGCCATGGAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGTTGTTGTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAATTGCCATGGAA 234
Query 238 TTTGCCAACAGATCTCAAGTTCTTTAAAGACATTACTTTGACCACTTCAGATTCCTCTAA 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTTGCCTACAGATCTCAAGTTCTTTAAAGACATTACTTTGACCACTTCAGATTCCTCTAA 294
Query 298 GAAAAATGCTGTTGTGATGGGTAGAAAGACTTGGGAGTCTATTCCCATTAAGTATAGGCC 357
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 295 GAAAAATGCTGTTGTGATGGGTAGAAAGACTTGGGAGGCTATTCCAATTAAGCATAGGCC 354
Query 358 GCTTTCGGGTCGGCTTAACGTTGTTCTAACTCGTTCTGGTGGGTTTGATATAGCCAACAC 417
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 355 GCTTTCGGGTCGGCTTAACGTTGTTTTAACTCGCTCTGGTGGGTTTGATATAGCTAACAC 414
Query 418 TGAGAATGTTGTCACTTGTAGTAGTGTAGATTCTGCTCTTGATTTGTTAGCTGCGCCGCC 477
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 415 TGAGAATGTTGTCACTTGCAGTAGTGTAGATTCTGCTCTTGATTTATTAGCTGCACCGCC 474
Query 478 GTATTGTTTATCTATTGAGAGGGTTTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 537
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 GTATTGTTTATCTATTGAGAGGGTGTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 534
Query 538 ATTGAATAGGCCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTGTTGACTG 597
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 535 ATTGAACAGGCCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTATTGAATG 594
Query 598 TGATACGTTTATACCTGCGATTGATACTTCTGTTTATCAGCCTTGGTCTTCATCGTTTCC 657
||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||
Sbjct 595 TGATACGTTTATACCTGCGGTTGACACAACTGTTTATCAGCCTTGGTGTTCATCGTTTCC 654
Query 658 AGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAGAGTTCTGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 655 AGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAAAG-T-T-C 711
Query 718 TGATGAATCTTCTGATGAAAGCAATGGGTCACAGTCTCTTCAATTTGATGGGAAGAAGTT 777
| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 712 ---T--A----CTGATGAAAGCAATGTGTCACAGTCTCTTCAATTTGATGGGAAGAAGTT 762
Query 778 TTTGTTTCTTCCTAAGATGGTTTTTGATCAGCATGAGGAGTTTCTGTATTTGAATATGGT 837
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 763 TTTGTTTCTTCCCAAGATGGTTTTTGATCAGCATGAGGAATTTCTGTATTTGAATATGGT 822
Query 838 TGAAGATATTATCTCTAATGGCAATGTGAAGAATGATAGGACCGGGACTGGTACATTATC 897
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 823 TGAAGATATCATCTCTAATGGCAATGCGAAGAATGATAGGACCGGGACTGGTACATTATC 882
Query 898 AAAATTTGGTTGCCAGATGAAATTCAATTTACGCAGAAGTTTTCCACTTCTGACAACAAA 957
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 883 AAAATTTGGTTGCCAGATGAAACTCAATTTACGCAGAAGTTTTCCACTTCTGACAACTAA 942
Query 958 GCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAA 1017
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 943 GAGAGTTTTTTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTTATAAGCGGTTCAACCAA 1002
Query 1018 TGCAAAAGTCCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAGAGTA 1077
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGCAAAGGTTCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAGAGTA 1062
Query 1078 TCTCGATGGTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATT 1137
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TCTCGATGGTATCGGTCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATT 1122
Query 1138 TCAATGGCGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATTATACTGGTCAAGG 1197
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1123 TCAATGGCGACACTTTGGTGCTAAGTACACGGATATGCACGCTGATTATACTGGTCAAGG 1182
Query 1198 ATTTGATCAACT-TGTAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTA 1256
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTTTGATCAACTCT-TAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTA 1241
Query 1257 TTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATA 1316
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 1242 TTATAATGTCAGCTTGGAATCCTTCTGACCTCAAGTTGATGGCACTTCCTCCATGCCATA 1301
Query 1317 TGTTTGCACAATTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAG 1376
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TGTTTGCACAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAG 1361
Query 1377 CAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTACTTGCATGC 1436
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1362 CGGATATGGGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGC 1421
Query 1437 TGGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTCTTGGGGATGCTCATG 1496
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1422 TGGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATG 1481
Query 1497 TATACAAAACTCACGTGAGGCCTCTGCAAGAGCAACTTCTGAATCTTCCAAAACCCTTTC 1556
| ||||||||||| || | |||||||||||||||||||||||| | || ||||| ||||
Sbjct 1482 TGTACAAAACTCATGTAATGCCTCTGCAAGAGCAACTTCTGAACCCACCTAAACCTTTTC 1541
Query 1557 CTGTAATGAAGATAAACCCGGAGAAGAAACAAATCGATTCTTTTGTGGCTTCTGACTTTG 1616
|||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 1542 CTGTTTTGAAGATAAACCCAGAGAAGAAACAAATTGATTCTTTTGTGGCTGCTGACTTTG 1601
Query 1617 ACCTCACAGGCTATGATCCTCACAAGAAGATAGAAATGAAAATGGCGGTTTAGTTCTCAT 1676
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1602 ACCTCACAGGATATGATCCTCACAAGAAGATAGAGATGAAAATGGCGGTTTAGT------ 1655
Query 1677 CTCTTACTATAGGATATGACCAAAAGGAGACTACCGACAAATTGATTGTGTAAAAT--TT 1734
|||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1656 -----------GGATATGACCAAAAGGAGACTACCGACAAATTGATTGTGTAATATCCTT 1704
Query 1735 ATGATTGAATCAGATGAATGACCATCAATGTA-TGGACT--CATATTACC---CTTTTGT 1788
| || |||| | | | | || ||| | || || |||||| || | ||
Sbjct 1705 CTCTTT---TCAGTTTT-T--CTTTGAA-GTAGTCTACCGACAAATTACCAAACTGT-GT 1756
Query 1789 GGGTGATAACTTGTCAT-AAACATGTGTTGGAATCCTCTAGTTCCACATGGTTCTAGAGC 1847
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1757 GGGTGATAACTTGTCATTAAACATGTGTTGGAATCCTCTAGTTCCACAGGGTTCTAGAGC 1816
Query 1848 GATTTAGGATTTTATACTTC 1867
||||||||| ||||||||||
Sbjct 1817 GATTTAGGAGTTTATACTTC 1836
> Ahg888609 jgi|Araly1|888609|Al_scaffold_0007_595
Length=1698
Score = 1596 bits (864), Expect = 0.0
Identities = 1382/1627 (85%), Gaps = 55/1627 (3%)
Strand=Plus/Plus
Query 69 CATCATCTATT-GCAAGTATCTCCAAGGTTTTGA-TTTCCACAATGGCAACAACTACTCT 126
|||| ||| || |||| |||| ||||| ||| | |||| || ||||| |||| |||||
Sbjct 101 CATCCTCT-TTGGCAAACATCTTCAAGG-TTTCAGTTTCAACCATGGC--CAAC-ACTCT 155
Query 127 CAAT-GACAGTGTCACCACTACACTTG-CTTCAGAGCCTCAAAGGACTTACCAAGTTGTT 184
|||| || | ||| | | || || ||||| | ||||| || ||||||||||||||
Sbjct 156 CAATGGA-AATGT---GA-T-CA--TGCCTTCAAAACCTCAGAGTACTTACCAAGTTGTG 207
Query 185 GTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAA-TTGCCATGGAATTTGCC 243
|| |||||||| || |||||||||||||||||||| || ||| || ||||||||||||||
Sbjct 208 GTAGCTGCAACCAAGGAAATGGGTATTGGTAAAGACGGAAAACTT-CCATGGAATTTGCC 266
Query 244 AACAGATCTCAAGTTCTTTAAAGACATT-ACTTTGACCACTTCAGATTCCT-CTAAGAAA 301
|| |||||||||||||| || || || |||||||||||||| |||| || |||||||
Sbjct 267 TACCGATCTCAAGTTCTTCAAGGA-TTTAACTTTGACCACTTCGGATT-CTGCTAAGAAG 324
Query 302 AATGCTGTTGTGATGGGTA-GAAAGACTTGGGAGTCTATTCCCATTAAGTATAGGCCGCT 360
|| |||||||| ||||||| |||| || |||||||||||||||| ||||||||||| ||
Sbjct 325 AACGCTGTTGTAATGGGTAGGAAA-ACGTGGGAGTCTATTCCCACAAAGTATAGGCCACT 383
Query 361 TTCGGGTCGGCTTAACGTTGTTC-TAACTCGTTCTGGTGGGT-TTGATATAGCCAACACT 418
|| ||||| || || |||| || | |||||||| | ||| | |||||||||||||||
Sbjct 384 CTCTGGTCGCCTGAATGTTG-TCTTGACTCGTTCAAG-CGGTGTCGATATAGCCAACACT 441
Query 419 GAGAATGTTGTCACTTGTAGTAGTGTAGATTCTGCTCTTGATTTGTTAGCTGCGCCGCCG 478
||||||||||| ||||| ||||| ||||||||||||| || || |||||||| || |||
Sbjct 442 GAGAATGTTGTAACTTGCAGTAGCATAGATTCTGCTCTGGACTTATTAGCTGCACCTCCG 501
Query 479 TATT-GTTTATCTATTGAGAGGGTTTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 537
| || || | || ||||||| ||| ||||| ||||||||||| |||||||||||||||||
Sbjct 502 T-TTAGTCTGTCCATTGAGAAGGTGTTTGTAATAGGAGGTGGCGACATATTGAGGGAAGC 560
Query 538 ATTGAATAGG-CCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTGTTGACT 596
|||||| || || || ||||| || ||||| ||||| ||||||||||||||| ||||||
Sbjct 561 GTTGAAT-GGACCGAGCTGTGAAGCCATCCACTTAACGGAGATTGATACAAGTATTGACT 619
Query 597 GTGATACGTTTATACCTGCGATTGATACTTCTGTTTATCAGCCTTGGTCTTCATCGTTTC 656
||||||| ||||| || ||| |||| || |||| ||||||||||||| ||| || ||||
Sbjct 620 GTGATACATTTATTCCCGCGGTTGACACATCTGCATATCAGCCTTGGTGTTCGTCATTTC 679
Query 657 CAGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAGAG---TT 713
|| || ||||||||||||||| |||| ||||||||||| ||| ||||||||||| ||
Sbjct 680 CAATATGTGAAAATGGACTTCGATTTTCCTTCACGACTTATGTTCGTGTAAAGAGTTCTT 739
Query 714 CTG-CTGATGAATCTTCTGATGAAAGCAATGGGTCACA-GTCTCTTCAATTTGATGGGAA 771
||| ||| |||||| ||||||| || |||||||| | ||| |||||| ||||| ||||
Sbjct 740 CTGCCTG-TGAATCCTCTGATGTGAGTGATGGGTCAAAGGTC-CTTCAAGTTGATTGGAA 797
Query 772 GAAG-TTT-TT-GTTTCTTCCTAAGATGGTTTTTGATCAG-CATGAGGAGTTTCTGTATT 827
||| ||| || ||||||||||||||| ||||||| | | ||||| || ||||| || |
Sbjct 798 AAAGTTTTCTTCTTTTCTTCCTAAGATGATTTTTGA-CCGTCATGAAGAATTTCTATACT 856
Query 828 TGAATATGGTTGAAGATATTATCTCTAATGGCAA-TGTGAAGAATGATAGGACCGGGACT 886
||||| |||| |||| || ||||| ||||| || | | ||| |||||||| ||||||
Sbjct 857 TGAATCTGGTCAAAGAGATAATCTCAAATGGAAACT-TAAAGGGCGATAGGACAGGGACT 915
Query 887 GGTACATTATCAAAATTTGGTTGCCAGATGAAATTCAATTTACGCA-GAAGTTTTCCACT 945
||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |||||
Sbjct 916 GGTACATTATCTAAATTTGGTTGTCAGATGAAATTCAATTTACGCAGGAA-TTTCCCACT 974
Query 946 TCTGACAACAAAGCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAG 1005
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TCTGACGACAAAGAGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAG 1034
Query 1006 CGGTTCAACCAATGCAAAAGTCCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGC 1065
|||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||
Sbjct 1035 CGGTTCAACCAATGCAAAGGTACTTCAAGAAAAGGGTATCCGTATATGGGATGGGAATGC 1094
Query 1066 GTCAAGAG-AGTATCTCGATGGTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGAC 1124
||| |||| | ||||| |||||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 1095 GTCGAGAGCA-TATCTTGATGGTATTGGACTGACTGAGAGAGAAGAAGGTGACCTTGGAC 1153
Query 1125 CTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATT 1184
| || || |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CCGTTTATGGATTTCAGTGGAGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATT 1213
Query 1185 ATACTGGTCAAGGATTTGATCAACT-TGTAGATGTAATTGACAAAATCAAGAACAATCCT 1243
|||| || |||||||||||||| || | ||||||||||| |||| |||||||||||||||
Sbjct 1214 ATACGGGGCAAGGATTTGATCAGCTCT-TAGATGTAATTCACAAGATCAAGAACAATCCT 1272
Query 1244 GATGATCGGCGTATTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTT 1303
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1273 GATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTT 1332
Query 1304 CCTCCATGCCATATGTTTGCACAATTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATG 1363
||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||||||||
Sbjct 1333 CCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTCATGTCAAATG 1392
Query 1364 TATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTT 1423
|||||||| ||||| |||||||| || || || || ||||||||||| || ||||| |||
Sbjct 1393 TATCAGCGCTCAGCCGATATGGGTCTCGGAGTACCATTTAACATTGCATCATACTCCCTT 1452
Query 1424 CTTACTTGCATGCTGGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTCTT 1483
||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1453 CTTACATGCATTCTCGCTCACGTCTGTGATCTTGTTCCTGGTGATTTTATCCATGTGATT 1512
Query 1484 GGGGATGCTCATGTATACAAAA-CTCACGTGAGGCCTCTGCAAGAGCAACTTCTGAATCT 1542
|| ||||||||||| ||||||| | || || |||||||||||||||||||||| ||| |
Sbjct 1513 GGAGATGCTCATGTTTACAAAAAC-CATGTCAGGCCTCTGCAAGAGCAACTTCAGAACCC 1571
Query 1543 TCCAAAACCCTTTCCTGTAATGAAGATAAACCCGGAGAAGAAACAAATCGATTCTTTTGT 1602
|||||||| |||||||| |||||||||| |||||||||||| | || |||||||||||
Sbjct 1572 ACCAAAACCTTTTCCTGTTTTGAAGATAAAACCGGAGAAGAAAGATATAGATTCTTTTGT 1631
Query 1603 GGCTTCTGACTTTGACCTCACAGGCTATGATCCTCACAAGAAGATAGAAATGAAAATGGC 1662
| | |||||| || |||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1632 GTCGGATGACTTCGAGCTCATTGGCTATGATCCTCACAAGAAAATAGATATGAAAATGGC 1691
Query 1663 GGTTTAG 1669
|||||||
Sbjct 1692 GGTTTAG 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5