BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16380.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906767 jgi|Araly1|906767|Al_scaffold_0003_3895 2440 0.0
Ahg888608 jgi|Araly1|888608|Al_scaffold_0007_594 837 0.0
> Ahg906767 jgi|Araly1|906767|Al_scaffold_0003_3895
Length=1659
Score = 2440 bits (1321), Expect = 0.0
Identities = 1554/1664 (93%), Gaps = 25/1664 (2%)
Strand=Plus/Plus
Query 113 ATGGCTGACACCAAACAAGATATGGAGAATTCAGAGGATGGAAGGAAGCTAGTGAAGATG 172
||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||
Sbjct 1 ATGGCTGACACCAAACAAGATATGGAGAATTCAGATGATGGGAGAAAGATAGTGAAGATG 60
Query 173 AGCTCGCTTAAACAGAAAGCGATAAGCGCATCAAATAGATTCAAGAACTCTTTCAAGAAG 232
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 AGCTCGCTTAAACAGAAAGCAATAAGTGCATCAAATAGATTCAAGAACTCGTTCAAGAAG 120
Query 233 AAGACTCGGAGGACCAGCAGCAAAATTGTGTCCGTAGCCAATACAGACGACATCAACGGG 292
|||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||
Sbjct 121 AAGACTCGGAGGACCAGCAGCAAAATCGTGTCCGCAGCCAATACAGATGACATCAATGGG 180
Query 293 GACGATTATCTGTCCGTGGAAGCGTTCCGTCAAGTCCTCGTCCTTGACGACCTTTTGCCC 352
|| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 181 GAGGATTATCTGTCTGTGGAAGCGTTCCGTCAAGTCCTTGTCCTCGACGACCTTTTGCCT 240
Query 353 CCCAAACACGATGATCTTCACATGATGCTCAGATTCTTAAGGGCGAGAAAATTTGACAAA 412
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAAATACGACGATCTTCACATGATGCTCAGATTCTTAAGGGCGAGAAAATTTGACATT 300
Query 413 GAGAAAGCAAAGCAAATGTGGAGTGACATGCTTCAATGGAGGATGGATTTCGGAGTCGAT 472
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GAGAAAGCAAAGCAAATGTGGAGTGACATGCTTCAATGGAGGATGGATTTTGGAGTCGAT 360
Query 473 ACAATCATTGAGGATTTCGAGTTTGAAGAGATCGATCAAGTACTCAAACATTATCCGCAA 532
||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 361 ACAATCATTGAGGATTTCGAGTTTGGAGAGATCGATGAAGTACTCCAACATTATCCGCAA 420
Query 533 GGTTACCATGGAGTGGACAAAGAAGGCAGGCCGGTTTACATTGAGAGATTAGGTCAAATC 592
||||| |||||||| |||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 421 GGTTATCATGGAGTAGACAGAGAAGGCAGACCTGTTTACATTGAGAGATTAGGTCAAATC 480
Query 593 GATGCAAACAAGCTGTTACAAGCGACTACAATGGACCGGTATGAGAAATACCATGTGAAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGCAAACAAGCTGTTACAAGCGACTACAATGGACCGGTATGAGAAATACCATGTGAAA 540
Query 653 GAGTTCGAGAAGATGTTTAAGATCAAGTTCCCTTCTTGCTCTGCCGCAGCCAAGAAGCAC 712
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGTTCGAGAAGATGTTCAAGATCAAGTTCCCTTCTTGCTCTGCCGCAGCCAAGAAGCAC 600
Query 713 ATTGACCAAAGCACAACCATTTTTGATGTCCAAGGAGTGGGGCTTAAGAACTTCAACAAA 772
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 ATTGACCAAAGCACAACCATTTTTGATGTGCAAGGCGTGGGGCTTAAGAACTTCAACAAA 660
Query 773 TCCGCGAGAGAGCTGCTTCAGCGCCTTCTCAAGATCGATAATGACAATTACCCTGAGACT 832
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCGCGAGAGAGCTGCTTCAGCGACTTCTCAAGATCGATAATGACAATTACCCTGAGACT 720
Query 833 TTGAACAGAATGTTCATCATCAATGCTGGTCCTGGATTCCGGCTCTTGTGGGCTCCAATT 892
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 721 TTGAACAGAATGTTCATCATCAATGCCGGTCCTGGATTCCGGCTCTTGTGGGGTCCAATT 780
Query 893 AAAAAGTTCCTCGATCCAAAAACGACATCAAAGATTCATGTTCTTGGGAACAAATACCAA 952
||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 781 AAAAAGTTCCTTGATCCAAAAACGACATCAAAGATACATGTTCTTGGGCACAAATACCAG 840
Query 953 CCCAAATTGCTCGAAGCCATAGACGCTAGCGAGTTGCCATATTTCTTTGGCGGCCTTTGT 1012
|||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 841 CCCAAATTGCTCGAAGCCATCGACCCTAGCGAGTTGCCACATTTCTTTGGCGGCCTTTGC 900
Query 1013 ACTTGTGCAGACAAAGGTGGCTGTTTGCGATCTGACAAAGGCCCATGGAATGATCCTGAG 1072
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTTGTGCAGACAAAGGTGGCTGCTTGCGATCTGACAAAGGCCCATGGAATGATCCTGAG 960
Query 1073 CTTCTTAAGATAGCTAGGAACCCTGAAGCCAGATTCTCGACAATTTCAGAGGAAGACTAC 1132
|||||||||||||||| || |||||| |||||||||||||||||||||||||| ||| ||
Sbjct 961 CTTCTTAAGATAGCTAAGAGCCCTGACGCCAGATTCTCGACAATTTCAGAGGATGACCAC 1020
Query 1133 TTGCTTGTAGAAGAAGGAACATCAATGTCGATGGTCTTTGAACCTCTAGAGAGAAACAAG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGCTTGTAGAAGAAGGAACATCAATGTCGATGGTCTTTGAACCTCTAGAGAGAAACAAG 1080
Query 1193 ATGAAAACCATCGAAGAGAATGTGAGTGAGAAGCACATTGACGCGGTTGACAAGTTCATG 1252
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 ATGAAAACAATCGAAGAGAATGTGAGTGAGAAGCACATTGCCGCGGTTGACAAGTTCATG 1140
Query 1253 GCTCTGTCTTTGCCACCGAAACCTCATTTAAAAACCCTAAGAAAAGG--------G--A- 1301
||| |||||||||| || ||| ||||||||||||||||||||||||| | |
Sbjct 1141 GCTTTGTCTTTGCCTCCAAAAGCTCATTTAAAAACCCTAAGAAAAGGTCTACACTGTTAC 1200
Query 1302 --A---A-G-AGCCACAAAAGAAAGATGATAGCTTTCTTGTGGGAGGGGTTATTGCTTTT 1354
| | | |||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 1201 GTAGGGAAGGAGCCACAAAAGAAAGACGATGGATTTCTTGTGGGAGGGGTTATCGCTTTT 1260
Query 1355 GTGATGGGAATTGTTGCAATGCTCCGGCTATCTAAAGCCGTTCCAAGGAAGCTTACTGAT 1414
|| |||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1261 GTAATGGGAATTGTTGCAATGCTCCGGCTATCTAAAGACGTTCCAAGGAAGCTCACAGAT 1320
Query 1415 GTTGCATTATT-GACCAACTCAGTTTACTACGAGGAAGCAAAAATGTCTAAGCCAAACCA 1473
| ||||||||| | | ||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 1321 GCTGCATTATTCGGC-AACTCAGTTTACTACGAGGAATCAAAAATGTCTAAACCTAACCA 1379
Query 1474 AGATGAAGTTTCAGCACCACCAGTCTCTAGCTCTGAGTACGTAATTATGGTCAAACGTAT 1533
|||| || |||| || |||||||||| ||||| |||||| ||||||||| ||||||||
Sbjct 1380 AGATCAA-TTTC--CAGCACCAGTCTCAAGCTCCGAGTACACAATTATGGTGAAACGTAT 1436
Query 1534 GGCCGAGCTTGAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGAAGCTTTAGA 1593
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1437 GGCCGAGCTTGAAGAAAAGTACAAGTCCCTTGACTCAAAATCAGCAGATGATGCTTTAGA 1496
Query 1594 GAAAGATGATAAACTTCAGGCTGCGCTGAACCGGGTTCAAGTGCTTGAGCATGAGTTATC 1653
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1497 GAAAGAGGATAAACTTCAGGCTGCGCTTAACCGAGTTCAAGTGCTTGAGCATGAGTTATC 1556
Query 1654 TGAGACCAAAAAGGCTTTGGATGAAACGATGGTTAACCA-ACAGGGTATTCTTGCATATA 1712
||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||
Sbjct 1557 TGAGACCAAAAAGGCTTTGGATGAAACGATGGTTAACCAGA-AGGGGATTCTTGAATATA 1615
Query 1713 TTGAGAAGAAAAATAAGAAGAAGAGAATGTTCTTCAGGTTCTAA 1756
||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1616 TTGAGAAGAAAAAGAAGAAGAAGAGACTGTTTTTCAGGTTCTAA 1659
> Ahg888608 jgi|Araly1|888608|Al_scaffold_0007_594
Length=1665
Score = 837 bits (453), Expect = 0.0
Identities = 920/1140 (81%), Gaps = 53/1140 (5%)
Strand=Plus/Plus
Query 113 ATGGCTGACACCAAACAAGATATGGAGAAT-TCAGAGGATGGA-AGGAAGCTAGTGAAGA 170
|||||||| ||||||| || || ||| || || ||||| || |||||| |||||||||
Sbjct 1 ATGGCTGAGACCAAACCTGAAATAGAG-ATGTCGGAGGA-AGAGAGGAAGATAGTGAAGA 58
Query 171 TGAGCTCGCTT-AA-ACAGAAAGCGATAAGCGCATCAAATAGATTCAAGAACTCTTTCAA 228
|| ||||| || || | |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 59 TGTGCTCG-TTGAAGA-AGAAAGCGATAAATGCATCAAACAGATTCAAGAACTCATTCAA 116
Query 229 G-AAGAAGACTCGGAGGACCAGCAGCAAAATTGTGTCCGTAGCCAATACA-GACGACATC 286
| || ||| |||||| | |||||||| | ||||||| ||| || | ||||||||
Sbjct 117 GAAAAAAG-GTCGGAGAAGCAGCAGCAGGGTCATGTCCGT-GCCGATTGAGGACGACATT 174
Query 287 AACGGGGACGAT-TATC-TGTC-CGTGGAAGCGTTCCGTCAAGTC-CTCGTCCTTGACGA 342
||| || ||| | || | | | | || || || ||||||| | || |||||||||||
Sbjct 175 GACGCAGAAGATCT-TCAAG-CTC-TTGATGCTTTTCGTCAAG-CTCTTGTCCTTGACGA 230
Query 343 CCTTTTGCCCCCCAAACACGATGATCTTCACATGATGC-TCAGATTCTTAAGGGCGAGAA 401
|| ||||| |||||| ||||||||| |||||||||| || ||||||| ||||| ||||
Sbjct 231 GCTCTTGCCATCCAAACTCGATGATCTCCACATGATGCTTC-GATTCTTGAGGGCAAGAA 289
Query 402 AATTTGACAAAGAGAAAGCAAAGCAAATGTGGAGTGACATGCTTCAATGGAGGATGGATT 461
| ||||||| |||||||| ||||| ||||||||||||||| |||||||||||| ||||
Sbjct 290 AGTTTGACATTGAGAAAGCTAAGCAGATGTGGAGTGACATGATTCAATGGAGGAAAGATT 349
Query 462 TCGGAGTC-GATACAATCATTGAGGATTTCGAGTTTGAAGAGATCGATCAAGT-ACTCAA 519
|||| | | || ||||||||||||||||| ||||| ||||| |||||| |||| | | ||
Sbjct 350 TCGGCG-CTGACACAATCATTGAGGATTTTGAGTTCGAAGAAATCGATGAAGTGA-TGAA 407
Query 520 ACATTATCCGCAAGGTTACCATGGAGTGGACAAAGAAGGCAGGCCGGTTTACATTGAGAG 579
|| || || ||||| || || ||||| ||||| |||||||| || ||||||||||||||
Sbjct 408 GCACTACCCTCAAGGCTATCACGGAGTAGACAAGGAAGGCAGACCAGTTTACATTGAGAG 467
Query 580 ATTAGGTCAAATCGATGCAAACAAGCTGTTACAAGCGACTACAATGGACCGGTATGAGAA 639
|||||||||||||||||| |||||||| | |||| ||| |||||||||||||| | |||
Sbjct 468 ATTAGGTCAAATCGATGCTAACAAGCTACTCCAAGTGACAACAATGGACCGGTACGTGAA 527
Query 640 ATACCATGTGAAAGAGTTCGAGAAGATGTTT-AAGATCAAGTTCCCTTCTTGCTCTGCCG 698
||| ||||| |||||||||||||||| ||| ||| ||||||| |||||||| |||| ||
Sbjct 528 ATATCATGTCAAAGAGTTCGAGAAGAC-TTTCAAGGTCAAGTTTCCTTCTTGTTCTGTCG 586
Query 699 CAGCCAAGAAGCACATTGACCAAAGCACAACCATTTTTGATGTCCAAGGAGTGGGGCTTA 758
|||| || ||||| ||||| || |||||||| ||| |||| || ||||| ||||||||||
Sbjct 587 CAGCGAATAAGCATATTGATCAGAGCACAACAATTCTTGACGTGCAAGGCGTGGGGCTTA 646
Query 759 AGAACTTCAACAAATCCGCGAGAGAGCTGCTTCAGCGCCTTCT-CAAGATCGATAATGAC 817
||||||||| |||||| || |||||||| ||||| | ||| | |||||| || |||||
Sbjct 647 AGAACTTCAGCAAATCTGCAAGAGAGCTTCTTCAAAGGCTT-TGCAAGATTGACAATGAA 705
Query 818 AATTACCCTGAGACTTTGAACAGAATGTTCATCATCAATGCTGGTCCTGGATTCCGGCTC 877
||||||||||||||||||||| | ||||| ||||||||||| ||| |||| |||||||||
Sbjct 706 AATTACCCTGAGACTTTGAACCGGATGTTTATCATCAATGCGGGTTCTGGGTTCCGGCTC 765
Query 878 TTGTGG-GCTCCAATTAAAAAGTTCCTCGATCCAAAAACGACATCAAAGATTCATGTTCT 936
|||||| || | | ||||| || || ||||| ||||| ||| ||||||| ||||||||
Sbjct 766 TTGTGGAGCAC-AGTTAAATCTTTTCTTGATCCCAAAACCACAGCAAAGATCCATGTTCT 824
Query 937 TGGGAACAAATACCA-ACCCAAATTGCTCGAAGCCATAGACGCTAGCGAGTTGCCATATT 995
|||||||||||| || | | |||||||| |||| ||| || ||||| || |||||| | |
Sbjct 825 TGGGAACAAATATCATAGC-AAATTGCTTGAAGTCATTGATGCTAGTGAATTGCCAGAGT 883
Query 996 TCTTTGGCGGC-CTTTGTACTTGTGCAGACAAAGGTGGCTGTTTGCGATCTGACAAAGGC 1054
||||||| || ||| | ||||||| ||||||||| || ||| |||| |||||||||||
Sbjct 884 TCTTTGGAGGTGCTT-GCACTTGTGAAGACAAAGGAGGTTGTATGCGCTCTGACAAAGGT 942
Query 1055 CCATGGAATGATCCTGAGCTTCTTAAGATAGCTAGGAACC-CTGAAGCCAGATTCTCGAC 1113
|||||||||||||||||| |||| ||||| |||| |||| | ||||| | || ||| ||
Sbjct 943 CCATGGAATGATCCTGAGGTTCTCAAGATCGCTATAAACCGC-GAAGCTAAATGCTC-AC 1000
Query 1114 A-ATTTCAGAGGAAGA-CTACTTGCTTGTAGAAGAAGGAACATCAA-TGTCGATGGTCTT 1170
|||||||| || || | || | |||||| |||||| ||||| | || | | |||
Sbjct 1001 CGATTTCAGAAGATGAAC-ACAAACATGTAGACCAAGGAAGATCAACT-TC-A-G--CTT 1054
Query 1171 TG-AACCTCTAGAGAGAAACAAGATGAAAACC-ATCGAAGAGAATGTG-AGTGAGAAGCA 1227
| || ||| ||||||| ||||| ||||||| || || || |||||| | |||||||||
Sbjct 1055 CGGAAAGTCTTGAGAGAATCAAGAAGAAAACCGATGGA-GATAATGTGTA-TGAGAAGCA 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5