BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G16385.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480802 jgi|Araly1|480802|fgenesh2_kg.3__3503__AT2G16385.1         512    9e-145


> Ahg480802 jgi|Araly1|480802|fgenesh2_kg.3__3503__AT2G16385.1
Length=414

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 355/392 (91%), Gaps = 7/392 (2%)
 Strand=Plus/Plus

Query  59   AATTCCAAGGAGAGATAATTAAGTTATGGGTATGTCACCATTAACGGTGAAGAAACTTGG  118
            |||||| ||||||| |||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct  24   AATTCCTAGGAGAGCTAATAAAGTTATGGGTGTGTCACCATTAATGGTGAAGAAACTTGG  83

Query  119  TTTCATCTTCATGATTGTTTCAGCTTCTGCTCTTTCTGTCTCCTTTGCAGGCCGACCATC  178
            |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  84   TTTCATCTTCATGATTGTTTTAGCTTCTGCTCTTTCTGTCTCTTTTGCAGGCCGACCATC  143

Query  179  GATTTTTGTTCATaaaaaaaTAAATCTTCGCGAAGAGATGGTGGAAAGAAGCATGCATGA  238
            | || | || |||| | | ||| ||||||| || ||||||||||||||||||||||||||
Sbjct  144  GGTTCTAGTCCATACACATATAGATCTTCGTGATGAGATGGTGGAAAGAAGCATGCATGA  203

Query  239  GCATGAGAGGCTTCTAAGAATGAACACAAAGGATTATGGGAACAACAGTCCGTCACCTAG  298
             |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct  204  TCATGAGAGGCTTTTAAGAATGAACACAAAGGATTATGGGCACAACAGTCCGTCGCCAAG  263

Query  299  ACTTGAGAGACCTCCTTTCAAGCTTATACCCAATTGATGACATTAGAATTGGTTCTAATC  358
            ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  264  ACTTGAGAGGCCTCCTTTCAAGCTTATTCCCAATTGATGACATCAGAATTGGTTCTAATC  323

Query  359  CA--TCC-TTAA-ATAA-TATATACATATATAGGTAGAATTAGTTTCAGTGACTATATAG  413
            ||  |   |||| |||| |||||||||||||||||  |||||||||||||||||||||||
Sbjct  324  CACATTAATTAATATAAATATATACATATATAGGTTTAATTAGTTTCAGTGACTATATAG  383

Query  414  TTCCATCGAAATTTG-GAGATGTAATATAAAT  444
            || |||||||||| | ||||||||||||||||
Sbjct  384  TTTCATCGAAATT-GAGAGATGTAATATAAAT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5