BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16390.1
Length=3104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343537 jgi|Araly1|343537|fgenesh1_pg.C_scaffold_3003300 2747 0.0
> Ahg343537 jgi|Araly1|343537|fgenesh1_pg.C_scaffold_3003300
Length=2448
Score = 2747 bits (1487), Expect = 0.0
Identities = 1850/2017 (92%), Gaps = 58/2017 (3%)
Strand=Plus/Plus
Query 386 GGGTACTATAAGAATGTGCATAAAAGAAAGCAAAATCAAGTTGATGATGGA--------C 437
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 190 GGGTACTACAAGAATGTGCATAAAAGAAAGCAAAATCAAGTTGATGATGGACTTTGTTCC 249
Query 438 ----CTGAAGCAAAGCGGGTCAAGAGTTCAGCCAAAGTTATTGATTACTCTAACCCATTT 493
|||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||
Sbjct 250 GATTCTGAAGCAAAGCGGTTAAAGAGTTCATCCAAAGTGATTGATTACTCTAACCCATTT 309
Query 494 GCAGTTAGTAACATGCTTGAAGCTTTAGATAGTGGTAAATTTGGGAGTGTTAGTAAAGAG 553
||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 310 GCAATTAGTAACATGCTTGAAGCATTAGATGGTGGTAAATTTGGGAGTGTTACTAAAGAG 369
Query 554 TTGGAAGAGATAGCTGATATGAGGATGGATTTGGTTAAGCGTTCTATTTGGTTATACCCG 613
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 370 TTGCAAGAGATAGCTGATATGAGGATGGATTTGGTTAAGCGTTGTATTTGGTTATATCCA 429
Query 614 TCGCTAGCGTATACCGTGTTTGAAGCTGAGAAGAC---GAT--G----GATAATCAACAG 664
||| |||||||||||| |||||||| ||||||||| ||| | ||||||||||||
Sbjct 430 TCGTTAGCGTATACCGAGTTTGAAGATGAGAAGACGATGATGAGTTTCGATAATCAACAG 489
Query 665 GTTGTGGAA---GGTGTTATTAATTTGgatgatgatgatgatgatgat-actgatgTGGA 720
||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 490 GTTGTGGAAGGTGGTGTTATTAATTTGGATGATGATGATGATGATGATGA-TGATGTTTC 548
Query 721 GAAGAAAGCTCTCTGTGTTGTTCCTTCGTCGTCTGAGATTGTGCTTCTTGATTCTGATGA 780
||| |||||| | ||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 549 GAATAAAGCTATTTGTGTTGTTCC-T--TCGTCTGAGATTGTGGTTATTGATTCTGATGA 605
Query 781 TGAAGACAATGAGAGGCAGAGGCCTATGTATCAGTTTCAGTCTACTCTTGTACAGCATCA 840
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 606 TGAAGACAATGAGAGGCAGAGGTCTACGTATCAGTTTCAGTCTACTCTTGTACAGCTTCA 665
Query 841 GAAGAATCAAGGGGATGTGACTCCATTAATACCGCAATGCTCTTTCGAGGAGGTCGATTT 900
||||||||||||||||||||||||| ||| |||||||| | |||| ||||||||||||||
Sbjct 666 GAAGAATCAAGGGGATGTGACTCCAGTAACACCGCAATTCACTTTTGAGGAGGTCGATTT 725
Query 901 AGGGAGGGGCAA-G-GA-GATGCCTTCTGCCATTAAAGCCATTGTTGAGGGACAAACAAG 957
||||||| |||| | || ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 726 AGGGAGGAGCAAGGAGATGATGCCTTCTGTAATTAAGGCCATGGTGGAGGGACAAACAAG 785
Query 958 TAGAGGCAAAGTCCTT-CCTATAGAAAATGGTGTGGTTAATGAGAAA-GGTGTCTACGTG 1015
|||||||||||| || || |||||||||||||||| ||| || ||| ||||||||||||
Sbjct 786 TAGAGGCAAAGTTGTTGCC-ATAGAAAATGGTGTGGCTAACGA-AAAGGGTGTCTACGTG 843
Query 1016 GGCGTTGAGGAGGATGACAGTGATAATGAGTCTGAAGCAGCAGATGAAGATCTTGGTAAT 1075
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GGGGTTGAGGAGGATGACAGTGATAATGAGTCTGAAGCAGCAGATGAAGATCTTGGTAAT 903
Query 1076 ATCTGGAATGAAATGGCCTTGTCAATAGAGTGTTCCAAGGATGTAGCAAGGGAGACTTCA 1135
|||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 904 ATCTGGAATGAAATGGCCATGTCAATAGAGTGTTCCAAGGATATAGCATGGGAGACTTCG 963
Query 1136 CATAAGGAAAAGGCAGATGTAGTGGAAGATTGTGAGCACTCATTTATTCTAAAGGACGAT 1195
|||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 964 CATAAGCAAAAGGCAGATGTAGTGGAAGACTGTGAGCACTCATTCATTCTAAAGGATGAT 1023
Query 1196 ATGGGTTATGTTTGCCGTGTCTGCGGAGTTATTGAGAAAAGTATACTAGAGATAATTGAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ATGGGTTATGTTTGCCGTGTCTGCGGAGTTATTGAGAAAAGTATACTAGAGATAATTGAT 1083
Query 1256 GTGCAATTCACTAAAGCAAAACGAAACACAAGAACATATGCCTCTGAAACTAGAACTAAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1084 GTGCAATTCACTAAAGCAAAACGAAACACAAGAACATATGCCTCTGAAACTAGAAATAAA 1143
Query 1316 AGGTTTGGCGAATCTGATAATGAACTTAAGTTTTCTGAAGAAGGG-TTGATGATAGGTGG 1374
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 1144 AGGTTTGGCGAATCTGATGCTGAACTTAAGTTTTCTGAAGAAGGGCTT-ATGATAGGTGG 1202
Query 1375 ACTTGCTGCTCATCCAACGCATGCTGCCGAA-ATGAAGCCTCATCAAATTGAGGGATTTC 1433
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 1203 ACTTGCTGCTCATCCAACGCATGCTGAC-AACATGAAGCCTCATCAAATTGAGGGATTCC 1261
Query 1434 AGTTCCTTTGCAGCAATTTAGTGGCTGACGATCCTGGTGGCTGTATCATGGCTCATGCTC 1493
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1262 AGTTCCTTTGCAGCAATTTAGTGGCAGATGATCCTGGTGGTTGTATCATGGCTCATGCTC 1321
Query 1494 CAGGCTCTGGAAAAACCTTCATGATCATCAGTTTTATGCAGAGCTTTCTTGCAAAGTATC 1553
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1322 CAGGTTCTGGAAAAACCTTCATGATCATCAGTTTTATGCAGAGCTTCCTTGCTAAGTATC 1381
Query 1554 CTCAGGCTAAGCCATTGGTTGTTCTCCCAAAAGGTATTCTGCCTACTTGGAAAAAAGAGT 1613
|||||||||||||| ||||||| || ||||| || ||| || ||||||||||||||||||
Sbjct 1382 CTCAGGCTAAGCCACTGGTTGTGCTTCCAAAGGGGATTTTGTCTACTTGGAAAAAAGAGT 1441
Query 1614 TCGTGAGATGGCAAGTTGAGGACATACCACTGCTTGATTTCTATAGTGCTAAAGCAGAGA 1673
|| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 1442 TCCTTAGATGGCAAGTTGAGGACATACCACTGCTTGATTTCTACAGTGCTAGAGCAGAAA 1501
Query 1674 ACCGGGCACAGCAGCTGTCTATTTTGA-AACAGTGGATGGAGAAGAAGAGTATCTTATTT 1732
|||| |||||||||||| |||| |||| || | |||||||||||||||||||||||||||
Sbjct 1502 ACCGAGCACAGCAGCTGGCTATCTTGAGAAAA-TGGATGGAGAAGAAGAGTATCTTATTT 1560
Query 1733 CTTGGGTACCAGCAGTTCTCAACTATTGTGTGTGATGATACAA---CCGACTCACTTTCT 1789
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1561 CTTGGGTACAAGCAGTTCTCAACTATTGTGTGTGATGATACAAGTACCGACTCACTTTCT 1620
Query 1790 TGCCAGGAGATACTGCTCAAGGTACCTTCGATCCTCATTTTGGATGAAGGACACACTCCA 1849
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGCCAGGAGATACTGCTCAAAGTACCTTCGATCCTCATTTTGGATGAAGGACACACTCCA 1680
Query 1850 AGGAATGAGGACACAAATTTATTGCAGTCACTTGCCCAAGTCCAAACACCAAGAAAAGTT 1909
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 AGGAATGAGGACACAAATGTATTGCAGTCCCTTGCCCAAGTCCAAACACCAAGAAAAGTT 1740
Query 1910 GTCCTCTCAGGAACGCTTTATCAGAACCATGTAAAGGAGGTTTTCAACATTCTGAACCTT 1969
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1741 GTCCTCTCAGGAACGCTTTATCAGAACCATGTAAAGGAGGTTTTCAACATTTTGAACCTC 1800
Query 1970 GTTCGACCCAAATTCCTCAAATTGGATACCTCCAAATCTG-CTGTGAAGAGAATCTTG-G 2027
||||||||||||||||||||| ||||||||||||| ||| | |||||||| || ||| |
Sbjct 1801 GTTCGACCCAAATTCCTCAAACTGGATACCTCCAAGTCTATC-GTGAAGAGGATATTGAG 1859
Query 2028 CTTATACTCC-ATG-C-GATGTCAGGGGGAGACTTACTGG-AAGTAATTCAGATATGGCT 2083
|||| |||| || | ||||| ||| | | | | ||| || ||||||||| || ||
Sbjct 1860 -TTATGCTCCTATATCTGATGTAAGGTC-ACA-T-A-TGGGAAACAATTCAGATGTGTCT 1914
Query 2084 TCAATGTTCAATGAAACTGTGGAGCACACCCTGCAGAAGAGCGAGGATTTCACAGTGAAA 2143
|| |||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1915 TCGGCCTTCAATGAAATTGTGGAGTACACACTGCAGAAGAGCGAGGATTTCACGGTGAAA 1974
Query 2144 ATTAAAGTAATCCAAGATTTGCGGGAGATGACAAAGAAAGTGCTTCATTACTATAAAGGA 2203
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 ATTAATGTAATCCAAGATTTGCGGGAGATGACAAAGAAAGTGCTTCATTACTATAAAGGA 2034
Query 2204 GATTTCCTAGATGAGCTTCCTGGACTTGCTGATTTCACTGTGGTTCTTAATCTGTCTCCA 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GATTTCCTAGATGAGCTTCCTGGACTTGCTGATTTCACTGTGGTTCTTAATCTGTCTCCA 2094
Query 2264 AAGCAGTTGAACGAAGTGAAGAAGTTAAGACGTGAGAAGAGAAAATTTAAGGTTTCGGCT 2323
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 AGGCAGTTGAACGAAGTGAAGAAGTTAAGACGTGAGAAGAGAAAATTTAAGGTTTCGGCT 2154
Query 2324 GTGGGAAGTGCAATTTACCTTCACC-CGAAGCTGAAA 2359
||||||||||||||||||||||||| |||||||||||
Sbjct 2155 GTGGGAAGTGCAATTTACCTTCACCGCGAAGCTGAAA 2191
Score = 372 bits (201), Expect = 1e-101
Identities = 236/253 (93%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 2774 GGGCGAGCGTTTCGACCCGGACAAA-AGAAGATGGTGCATGCATATAGATTGATTGCTGG 2832
||||| || |||||||||||||||| | |||| |||||||||||| ||||||||||||||
Sbjct 2197 GGGCGGGCTTTTCGACCCGGACAAACA-AAGAAGGTGCATGCATACAGATTGATTGCTGG 2255
Query 2833 GTCATCACCTGAGGAAGAGGATCACAACACTTGTTTCAAAAAGGAAGTCATCTCAAAGAT 2892
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2256 GTCATCACCTGAGGAGGAGGATCACAACACTTGCTTCAAAAAGGAAGTCATCTCAAAGAT 2315
Query 2893 GTGGTTCGAGTGGAACGAGTACTGCGGATATCAAAACTTTGAGGTAGAGACGATCGATGT 2952
|||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||
Sbjct 2316 GTGGTTCGAGTGGAACGAGTACTGCGGATACCGAAACTTTGAGGTAGAGACAATTGATGT 2375
Query 2953 GGATGAAGCTGGTGATACGTTCCTCGAAAGTCCTGCCTTAAGAGAAGACATAAGAGTTCT 3012
|||||| |||| ||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2376 GGATGATGCTGATGATATGTTCCTTGAAAGTCCTACCTTAAGAGAAGACATAAGAGTTCT 2435
Query 3013 CTACAAAAGGTAA 3025
|||||||||||||
Sbjct 2436 CTACAAAAGGTAA 2448
Score = 89.8 bits (48), Expect = 1e-16
Identities = 130/166 (78%), Gaps = 20/166 (12%)
Strand=Plus/Plus
Query 16 AGAGTCTCTCAGCTTCGAAGCACGAGC-GAGCGAGGCAAACCAAAAAGA-A-TCCAATT- 71
||||||||||||||||||||||||||| ||||||||||||||||||| | | | ||
Sbjct 26 AGAGTCTCTCAGCTTCGAAGCACGAGCGGAGCGAGGCAAACCAAAAATCCAGTTCGCTTC 85
Query 72 -TA-C-ATC---A-T-CTT---C-TC--CA--AAATTCAGCTCGAAATTTTCAACCTTTA 115
| | ||| | | ||| | || | ||||||||||||||| || |||||||||
Sbjct 86 GTTGCCATCTTCAATTCTTGTTCATCTTCCTCAAATTCAGCTCGAAAGTTCCAACCTTTA 145
Query 116 CTGGTTTAATGGACATTCTCCAGACCGATCAAGCTTCCTCAAACGG 161
|| ||||||||| |||||||| |||||||||| ||||||||||
Sbjct 146 CTTCTTTAATGGAGATTCTCCATCCCGATCAAGCAACCTCAAACGG 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117241774110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5