BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16400.1
Length=2156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480804 jgi|Araly1|480804|fgenesh2_kg.3__3505__AT2G16400.1 2765 0.0
> Ahg480804 jgi|Araly1|480804|fgenesh2_kg.3__3505__AT2G16400.1
Length=2098
Score = 2765 bits (1497), Expect = 0.0
Identities = 1928/2121 (91%), Gaps = 90/2121 (4%)
Strand=Plus/Plus
Query 1 ATAGCTTCATTCAATTTTATTGCAGCAAACAAACAGAAAGGCCA--G--A-G--AGACGA 53
||||||||| ||||||||||||||||||||||||| |||||||| | | | ||| ||
Sbjct 1 ATAGCTTCAATCAATTTTATTGCAGCAAACAAACAAAAAGGCCAGGGACACGAAAGA-GA 59
Query 54 -A-AGAGAGAGGCATTAGGGTTTAGGATTAGGTTTTAGAAAAGGGTTTAGA--TCT---- 105
| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 60 GATAGAGAGAGGCATTAGGGTTTAGGATTACGTTTTAGAGAAGGGTTTAGATCTCTACCA 119
Query 106 CTACCAACTGGTTTGTTAAGAACATAATCTCCTTACCACATTTTTACTCTTGAAAACATT 165
|||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct 120 CTACCAACTGGTTTGTTAAGAACAGAATCTCCTTAACACATTTTTACTTTTTAAAACATT 179
Query 166 TTG-ATCTGTTTTTGTTATCTTCACCAAAAGACTTGACTCCAAG--A-AAC------AAG 215
||| | ||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 180 TTGTTTTTGTTTTTGTTATCTTCACCAAAAGACTTGACTCCAAGAAACAACAAGAAGAAG 239
Query 216 AAGAAGAATCAAGAAGCAAGTTCAAG----AACCAGCTTTTAATGAAATCTCTACTTCAA 271
|||||||||||||||||||||||||| ||||||| ||||| | || | | ||
Sbjct 240 AAGAAGAATCAAGAAGCAAGTTCAAGAACCAACCAGC-TTTAAAG-AA---CAAAAGGAA 294
Query 272 A---AAGGAAACTTGCTTTAAGGAGGATGGATCTTTTGTTTTCTTGAATCTTTTGTGTGG 328
| || |||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
Sbjct 295 AGTTAA--AAACTTGCTTTAGGGA-GATGGGTCTTTTGTTTTCTTGAATCTTTTGTGT-G 350
Query 329 GTAAAACATTTTGTATTATCAAGATTTTGATTTGAGGAGATAAAGAGTTTGTTGTTAAGT 388
| | ||||||||||||||| ||||| | ||||||| |||| |
Sbjct 351 G-----------G-----TCAAGATTTTGATTTAAGGAG-----GGGTTTGTTATTAATT 389
Query 389 TTGTGTTCTTGGGATCATCAAGAGTTAAAACaaaaaaaaaaaaaCATTTCTTTTTTCCTT 448
||||||||||||||||||||||| || | |||||||||||| ||||||||||
Sbjct 390 TTGTGTTCTTGGGATCATCAAGACTT----C------AAAAAAACATTTTTTTTTTCCTT 439
Query 449 CTTCAATTTGAGATTTAGTGTCTCCTTTAACACCCACAAAGCCAGCAGATGCTTTCCTGA 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 440 TTTCAATTTGAGATTTAGTGTCTCCTTTAACACCCACAAAGCCAGCAGATGCTTTACTGA 499
Query 509 TGACTCCTTGTTTGA----TCTGATC-ATAAGAAGAAGAAGACTATGGCCACTTATTACA 563
||| ||||||||||| | ||||| | |||||||||||||||||||| ||||||||||
Sbjct 500 TGAATCCTTGTTTGATGGTTATGATCTAGAAGAAGAAGAAGACTATGGCAACTTATTACA 559
Query 564 AAACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCCCTGGAAACGCAATGAACT 623
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 560 AAACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCTCTGGAAACGCAATGAGCT 619
Query 624 ACACAAATTCTTTCACAGAGACATTTCCTAGAGATTCAACTAATAATGTGTCACCTTCAA 683
|||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| |||| |
Sbjct 620 ACACAAATTCTTTCTCAGAGACTTTTCCTAGAGAAGCAACTAATAATGTCTCAGCTTCTA 679
Query 684 AAGAGATTCAAGTGTTGTCAAGCCTTGGTGGAGTTTCACAAATGGTTGAGATTCAAGATT 743
||||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 680 AAGAGATTCAAGTATTGTCAAGTCTTGGTGGAGCTTCACAAATGGTGGAGATTCAAGATT 739
Query 744 CTGGTTCTTGGAGAGATCAAGAAGACAATGACAGGAATCGCTTCCCGGTGATGAGGCGTC 803
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 740 CTGGTTCTTGGAGAGATCAAGAAGACAATGACAGGAGTCGCTTCCCGGTGATGATGCGTC 799
Query 804 TTGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCAATAATAACAATGAGTATGCAACAC 863
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 800 TTGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCACTAATAACAATGAGTATGCAACAC 859
Query 864 AGGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTATCTCAAAGCTGCTCAAG 923
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 860 AGGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTACCTCAAGGCTGCTCAAG 919
Query 924 AGCTTCTTGATGAAACTGTTAATGTTAAGAAAGCTCTAAAGCAGTTTCAGCCAGAGGGAG 983
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 920 AGCTTCTTGATGAAGCTGTTAATGTTAAGAAAGCTCTGAAGCAGTTTCAGCCACAGGGAG 979
Query 984 ATAAGATTAATGAAGTGAAAGAGAAGAATCTTCAGACGAATACTGCTGAAATCCCTCAAG 1043
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 980 ACAAGATTGATGAAGTGAAAGAGAAGAATCTTCAGACGAATATTGCTGAAATCCCTCAAG 1039
Query 1044 CAGAGAGGCAAGAATTGCAGAGCAAGTTGTCGAAACTTTTATCGATATTAGACGAGGTGG 1103
||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1040 CAGAGAGACAAGAAATGCAGAGCAAGTTGTCCAAACTTTTATCGATATTAGACGAGGTGG 1099
Query 1104 ATAGAAATTACAAGCAGTATTACCATCAGATGCAGATAGTCGTGTCGTCTTTCGATGTAA 1163
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1100 ATAGAAATTACAAGCAGTATTACCACCAGATGCAGATAGTTGTGTCGTCTTTCGATGTAA 1159
Query 1164 TAGCCGGATGTGGAGCAGCCAAACCATACACAGCCCTTGCGCTTCAGACCATCTCGAGGC 1223
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1160 TAGCTGGATGTGGAGCAGCCAAACCATACACGGCCCTTGCGCTTCAGACCATCTCTAGGC 1219
Query 1224 ATTTCCGTTGCTTAAGGGATGCGATATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAG 1283
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 ATTTTCGTTGCTTAAGGGATGCGATATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAG 1279
Query 1284 GAGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTG 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GAGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTG 1339
Query 1344 ATCAACAGGTAAGGCAACAAAGAGCGTTGCAGCGGTTAGGTGTGATGCAACCTCACACTT 1403
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1340 ATCAACAGGTAAGGCAACAAAGAGCATTGCAGCGGTTAGGTGTGATGCAACCTCACACTT 1399
Query 1404 GGCGGCCTCAACGCGGTTTACCAGATTCTTCTGTTTTGGTTCTCCGTGCTTGGCTATTTG 1463
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
Sbjct 1400 GGCGGCCTCAACGCGGTTTACCTGATTCCTCTGTTTTGGTTCTCCGTGCTTGGCTGTTCG 1459
Query 1464 AGCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTCGCTAGACAAACGG 1523
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1460 AGCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTGGCTAGACAAACGG 1519
Query 1524 GGTTGAGCCGAGGCCAGGTATCGAACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAAC 1583
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 GGTTGAGTCGAGGCCAGGTGTCGAACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAAC 1579
Query 1584 CGATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGCAGGAGAATGATCCCA 1643
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1580 CGATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGGAGGAGAATGATCCCA 1639
Query 1644 ACCAGTCTTCTGAAAACACACCAGAAATCACCGAGATTCAAGAGCTGCAAACTGAGTCTA 1703
||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1640 ACCCGTCTTCTGAAAACACACCAGAAATCACCGACATTCAAGAGCAACAAACTGAGTCTA 1699
Query 1704 GTTCCAACAATGGGCATGTACCTGGTGTGGCAAGCAGTAGCAT-GAGACAAAACACAGTG 1762
|||||||||| || | |||| || || || ||||||||||||| | |||||| ||| |||
Sbjct 1700 GTTCCAACAACGGACGTGTATCTAGTCTGCCAAGCAGTAGCATTG-GACAAAGCACGGTG 1758
Query 1763 GCCCATGGTGGTGACCGGTTCATGATGGTGACTGACATGACAAGAAATGGTAATGGTGGG 1822
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1759 GCCCGTGGTGGTGACCAGTTCATGATGGTGACTGACATAACAAGAAATGGTAGTGGTGGG 1818
Query 1823 ATGTCTTTAACGTTGGGGATTCAGAATTCCGATGCTCGTGGCGATGTTCCTATGTCCGGT 1882
||||||||||| |||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1819 ATGTCTTTAACATTGGGGATTCAGAATTCCGA--CA-G---CGATGTTCCTATGTCCGGT 1872
Query 1883 GGGATAGATAACTACAAGAATACCATCTCGGGAACCGATCTACAGTACTTAAACTCTCGC 1942
||||||||||||||| ||||||||||| |||||||| |||| || |||||||||||||||
Sbjct 1873 GGGATAGATAACTACGAGAATACCATCCCGGGAACCAATCTCCAATACTTAAACTCTCGC 1932
Query 1943 AACCACCAGCACCAGATTGGCTCTTCACAATTGTTGCATGATTTTGTAGCTTGA-G-G-A 1999
||||||||||||| | ||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 1933 AACCACCAGCACCGGCTTGGCTCTTCACAATTGTTGCATGACTTTGTAGCTTGATGAGGA 1992
Query 2000 GAATAGAAAGGTGTAGAAATGGATTCTTTTGTGAAAGTAAACCCAAAAA-ACGAAATTGT 2058
|||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 1993 GAATAGAAAGGTGTCGAAATGTATTCTTTTGTGAAAGTAAACCAAAAAAGACGAAATTGT 2052
Query 2059 AGATTAATGAGAAAACATGAG 2079
||||||||||||| |||||||
Sbjct 2053 AGATTAATGAGAAGACATGAG 2073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81132221850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5