BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16405.1 Length=1797 Score E Sequences producing significant alignments: (Bits) Value Ahg480805 jgi|Araly1|480805|fgenesh2_kg.3__3506__AT2G16405.1 2556 0.0 > Ahg480805 jgi|Araly1|480805|fgenesh2_kg.3__3506__AT2G16405.1 Length=1632 Score = 2556 bits (1384), Expect = 0.0 Identities = 1507/1567 (96%), Gaps = 6/1567 (0%) Strand=Plus/Plus Query 184 AAATGGAGGAGAAAAACGGATCATCAGAGGTAGAGATCGGAGAGAAAGACGAAACGAAGA 243 ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| Sbjct 68 AAATGGAGGAGAAAACCGGATCATCAGAGGTAGAGATCGTTGAGAAAGACGAAGCGAAGA 127 Query 244 AGCAATCAAAGGATCTTGAGTTCT-TAAGCTGTATGATGCAGCCAAAAACAGCTGATTCA 302 | ||||||||||||| |||||| | |||||||||||||||||||| |||||| || ||| Sbjct 128 AACAATCAAAGGATCCTGAGTT-TATAAGCTGTATGATGCAGCCATCAACAGCCGAATCA 186 Query 303 GATCCACACTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGATTCTGGCGTT 362 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 187 GATCCTCAGTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGAATCTGGTGTT 246 Query 363 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCTTATCGTAATTTC 422 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 247 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCATATCGTAATTTC 306 Query 423 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 366 Query 483 AACAGTGGTCGATGGTTACCTTCTCCAAGTCCTCTCTCGCATCAATTTGAAGCTGAAAGC 542 |||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||| Sbjct 367 AACAGTGGTCGATGGTTACCGTCTCCGAGTCCTCTTTCCCATCAATTTGAAGCTGAAAGC 426 Query 543 TTTACTTCTAGTAGAGATTTAAGGAGTGTGAATCAGGTTTCAAGTCGTAGAGCGAGTTTT 602 ||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||| Sbjct 427 TTTACTTCTAGTAGAGATTTACGGAGTGTTAATCAGGTTTCAAGCCATAGAGCGAGTTTT 486 Query 603 AGCTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 662 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 AGTTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 546 Query 663 TCTTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 722 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TCGTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 606 Query 723 TTTGGTCATATGAGTTCTGATATACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 782 ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 607 TTTGGCCACATGAGTTCTGATTTACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 666 Query 783 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGTCACTCTAAAGATGTC 842 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 667 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGGCACTCAAAAGATGTC 726 Query 843 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 786 Query 903 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 787 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 846 Query 963 CAGTATTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 1022 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 CAGTTTTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 906 Query 1023 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTTGAG 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 907 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTCGAG 966 Query 1083 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1026 Query 1143 CAGGGAACTGTATATTCAGTAAGCATGGATTCGCATACAGGGTCATTATCCCGGTCTCAT 1202 ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1027 CAGGGAACTATATATTCAGTTAGCATGGATTCGCATACAGGTTCATTATCCCGGTCTCAT 1086 Query 1203 CGTCATCGTACAAATCACAAATCTCCTGTCACCACTGTGAAGTACAGAAGCTTCTCCCTC 1262 || |||||||| ||||| ||||| |||||||| |||||||||||| |||||||||||||| Sbjct 1087 CGCCATCGTACTAATCATAAATCCCCTGTCACAACTGTGAAGTACCGAAGCTTCTCCCTC 1146 Query 1263 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAGGACGGAAACTTGAGTTTCTTTAGT 1322 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 1147 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAAGACGGAAACTTGTGTTTCTTTAGT 1206 Query 1323 GTTGCCCTTCAGATAAAAGGTTATTTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1382 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1207 GTTGCTCTTCAGATAAAAGGTTATCTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1266 Query 1383 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCACTAGAGAAAGGAGAATACATA 1442 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1267 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCCCTAGAGAAAGGAGAATACATA 1326 Query 1443 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCGAAGCACACA 1502 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1327 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCAAAGCACACA 1386 Query 1503 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGG 1562 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1387 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGT 1446 Query 1563 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1447 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1506 Query 1623 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCCGTCATTTTTGCCA 1682 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1507 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCAGCCATTTTTGCCA 1566 Query 1683 CAAAGGCTTTGGGTTTGGCATCATCTCTG---TATCGCTAATCTCAAAACTGTGTCAATT 1739 ||||||||| ||||| || ||||||||| |||||||||||||||| ||||||||||| Sbjct 1567 GAAAGGCTTTTGGTTTTGCTTCATCTCTGCGGTATCGCTAATCTCAAA-CTGTGTCAATT 1625 Query 1740 TAGTTTC 1746 ||||||| Sbjct 1626 TAGTTTC 1632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67457823895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5