BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16405.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480805 jgi|Araly1|480805|fgenesh2_kg.3__3506__AT2G16405.1 2556 0.0
> Ahg480805 jgi|Araly1|480805|fgenesh2_kg.3__3506__AT2G16405.1
Length=1632
Score = 2556 bits (1384), Expect = 0.0
Identities = 1507/1567 (96%), Gaps = 6/1567 (0%)
Strand=Plus/Plus
Query 184 AAATGGAGGAGAAAAACGGATCATCAGAGGTAGAGATCGGAGAGAAAGACGAAACGAAGA 243
||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 68 AAATGGAGGAGAAAACCGGATCATCAGAGGTAGAGATCGTTGAGAAAGACGAAGCGAAGA 127
Query 244 AGCAATCAAAGGATCTTGAGTTCT-TAAGCTGTATGATGCAGCCAAAAACAGCTGATTCA 302
| ||||||||||||| |||||| | |||||||||||||||||||| |||||| || |||
Sbjct 128 AACAATCAAAGGATCCTGAGTT-TATAAGCTGTATGATGCAGCCATCAACAGCCGAATCA 186
Query 303 GATCCACACTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGATTCTGGCGTT 362
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 187 GATCCTCAGTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGAATCTGGTGTT 246
Query 363 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCTTATCGTAATTTC 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 247 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCATATCGTAATTTC 306
Query 423 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 366
Query 483 AACAGTGGTCGATGGTTACCTTCTCCAAGTCCTCTCTCGCATCAATTTGAAGCTGAAAGC 542
|||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 367 AACAGTGGTCGATGGTTACCGTCTCCGAGTCCTCTTTCCCATCAATTTGAAGCTGAAAGC 426
Query 543 TTTACTTCTAGTAGAGATTTAAGGAGTGTGAATCAGGTTTCAAGTCGTAGAGCGAGTTTT 602
||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||
Sbjct 427 TTTACTTCTAGTAGAGATTTACGGAGTGTTAATCAGGTTTCAAGCCATAGAGCGAGTTTT 486
Query 603 AGCTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGTTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 546
Query 663 TCTTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 722
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TCGTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 606
Query 723 TTTGGTCATATGAGTTCTGATATACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 782
||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTTGGCCACATGAGTTCTGATTTACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 666
Query 783 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGTCACTCTAAAGATGTC 842
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 667 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGGCACTCAAAAGATGTC 726
Query 843 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 786
Query 903 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 846
Query 963 CAGTATTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 1022
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CAGTTTTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 906
Query 1023 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTTGAG 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 907 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTCGAG 966
Query 1083 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1026
Query 1143 CAGGGAACTGTATATTCAGTAAGCATGGATTCGCATACAGGGTCATTATCCCGGTCTCAT 1202
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1027 CAGGGAACTATATATTCAGTTAGCATGGATTCGCATACAGGTTCATTATCCCGGTCTCAT 1086
Query 1203 CGTCATCGTACAAATCACAAATCTCCTGTCACCACTGTGAAGTACAGAAGCTTCTCCCTC 1262
|| |||||||| ||||| ||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 1087 CGCCATCGTACTAATCATAAATCCCCTGTCACAACTGTGAAGTACCGAAGCTTCTCCCTC 1146
Query 1263 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAGGACGGAAACTTGAGTTTCTTTAGT 1322
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1147 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAAGACGGAAACTTGTGTTTCTTTAGT 1206
Query 1323 GTTGCCCTTCAGATAAAAGGTTATTTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1382
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1207 GTTGCTCTTCAGATAAAAGGTTATCTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1266
Query 1383 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCACTAGAGAAAGGAGAATACATA 1442
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1267 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCCCTAGAGAAAGGAGAATACATA 1326
Query 1443 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCGAAGCACACA 1502
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1327 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCAAAGCACACA 1386
Query 1503 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGG 1562
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGT 1446
Query 1563 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1506
Query 1623 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCCGTCATTTTTGCCA 1682
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1507 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCAGCCATTTTTGCCA 1566
Query 1683 CAAAGGCTTTGGGTTTGGCATCATCTCTG---TATCGCTAATCTCAAAACTGTGTCAATT 1739
||||||||| ||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct 1567 GAAAGGCTTTTGGTTTTGCTTCATCTCTGCGGTATCGCTAATCTCAAA-CTGTGTCAATT 1625
Query 1740 TAGTTTC 1746
|||||||
Sbjct 1626 TAGTTTC 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5