BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16430.2
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906772 jgi|Araly1|906772|Al_scaffold_0003_3900 2124 0.0
> Ahg906772 jgi|Araly1|906772|Al_scaffold_0003_3900
Length=1428
Score = 2124 bits (1150), Expect = 0.0
Identities = 1340/1429 (94%), Gaps = 23/1429 (2%)
Strand=Plus/Plus
Query 61 ATGGGTCGTGTCCGAAAATCAGATTTCGGTTCCATTGTTCTTGTTCTGTGTTGTGTCCTA 120
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1 ATGGGTCGTGTCCGAAAATCAGATTTCTTTTCCATAGTTCTTGTTCTGTGTTTTGTCCTC 60
Query 121 AATAGCTTACTCTGTAATGGAGGCATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 180
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGCTTACTCTGTAATGGAGGTATCACCAGTAGATATGTCAGAAAATTAGAAGCAACC 120
Query 181 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAA 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GTTGATATGCCTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGTTACAATGCTCCTCAA 180
Query 241 CAGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACA 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 CAGGTGCATATAACACAAGGAGATGTAGAAGGGAAGGCAGTGATAGTATCATGGGTTACA 240
Query 301 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCACCAAAAAGCAC 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 241 CAAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCTCTAAAAAGCAC 300
Query 361 AAAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCAT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 AAAGCTTATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTATATCCAT 360
Query 421 CATTGCCCTATCAG--A---A-A------------C---TTAGAGTATGACACCAAGTAC 459
|||||||| ||||| | | | | |||||||||||||||||||||
Sbjct 361 CATTGCCCCATCAGAAACTTAGAGGTTGTGGTTTTCTTATTAGAGTATGACACCAAGTAC 420
Query 460 TATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAG 519
||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 421 TATTATGTGGTAGGTGTGGGACAAACAGAGCGTATGTTCTGGTTCTTCACTCCTCCTGAG 480
Query 520 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGGGGATCTTGGGCAGAGTTATGAC 540
Query 580 TCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTC 639
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TCAAACATAACCTTGACACATTATGAGAATAATCCAACAAAAGGGCAAGCGGTTTTGTTT 600
Query 640 GTCGGCGATATCTCATACGCTGATACTTATCCGGATCATGACAATAGGAGATGGGACAGT 699
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 601 GTCGGCGATATCTCATACGCTGATACTTATCCAGATCATGACAATAGGAGATGGGATAGT 660
Query 700 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAAC 759
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCATGGATTTGGACTACCGGAAAC 720
Query 760 CATGAACTCGATTTTGCCCCGGAGATTGGTGAAAACAGACCGTTTAAGCCGTTCACGCAT 819
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 721 CATGAACTCGATTTTGCCCCCGAGATTGGGGAAAACAGACCGTTTAAGCCATTCACGCAT 780
Query 820 AGGTACCGAACTCCTTACCGATCATCAGGCAGCACCGAACCATTCTGGTACTCGATAAAG 879
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 781 AGGTACCGTACTCCTTACCGATCATCAGGCAGCACAGAACCATTCTGGTACTCGATTAAG 840
Query 880 AGAGGACCGGCTTACATAATCGTGCTAGCTTCATATTCAGCATATGGAAAATACACACCA 939
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 841 AGAGGATCGGCTTACATAATCGTGTTAGCTTCATATTCAGCATATGGAAAATACACTCCG 900
Query 940 CAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTG 999
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 901 CAATACCAATGGCTCGAAGAGGAGTTCCCAAAAGTTAACAGGACGGAAACTCCGTGGTTG 960
Query 1000 ATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1059
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTGTTCTGATGCATTCACCGTGGTACAACAGCTATGATTACCATTACATGGAAGGTGAA 1020
Query 1060 ACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCA 1119
|| ||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1021 ACCATGAGAGTGATGTATGAGGCGTGGTTTGTCAAGTACAAAGTAGATGTTGTCTTTGCA 1080
Query 1120 GGTCATGTCCACGCCTACGAAAGATCGGAACGTGTATCAAACATAGCTTACAATGTTGTT 1179
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 GGTCATGTCCATGCCTACGAAAGATCGGAACGTGTGTCAAACATAGCTTACAATGTTGTT 1140
Query 1180 AACGGCATTTGCACTCCAGTCAAAGATCAATCAGCTCCAGTCTATATCACCATTGGTGAT 1239
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1141 AACGGCATTTGCACTCCAGTCAAAGATCAATCTGCTCCAGTCTACATCACCATTGGTGAT 1200
Query 1240 GGAGGCAATATTGAGGGCTTGGCTACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1299
||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGGAAATCTTGAGGGATTGGCCACCAAAATGACTGAGCCTCAGCCTAAGTACTCTGCC 1260
Query 1300 TTTAGAGAAGCAAGCTTCGGGCATGCTATATTCTCGATAAAGAACAGGACGCATGCTCAC 1359
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1261 TACAGAGAAGCAAGCTTCGGGCATGCGATATTCTCGATAAAGAACAGGACGCACGCTCGC 1320
Query 1360 TATGGATGGCATAGGAACCATGATGGTTATGCTGTGGAGGGTGACAGAATGTGGTTTTAT 1419
||||||||||| ||||||||||||||||| || || ||||||||||| |||||||||| |
Sbjct 1321 TATGGATGGCACAGGAACCATGATGGTTACGCCGTTGAGGGTGACAGGATGTGGTTTT-T 1379
Query 1420 -AACAGATTTTGGCATCCTGTTGATGATTCTCCTTCTTGTAATTCTTGA 1467
|||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1380 CAACAGATTCTGGCATCCTATTGATGATTCTCCTTCATGTAATTCTTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5