BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16460.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931826 jgi|Araly1|931826|scaffold_304283.1 1184 0.0
> Ahg931826 jgi|Araly1|931826|scaffold_304283.1
Length=733
Score = 1184 bits (641), Expect = 0.0
Identities = 702/732 (96%), Gaps = 2/732 (0%)
Strand=Plus/Plus
Query 151 TTCTTTCAATTTCTGATCGATGACATTGTCCAAGCGATTGGCTCTATTGGGAGCTCAATC 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTCTTTCAATTTCTGATCGATGACATTGTCCAAGCGATTGGCTCTATTGGGAGCTCAATC 61
Query 211 TGCGATTACTCTCGCTAAACCTCGAGGTCTCGGTTCCTCTCTCGGGTTACTTGATCGTCG 270
|||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct 62 TGCGATTACTCTCGCTAAACCTCGAGTTCTCGGTTCCTCTCTCGGATTGCTTAATCGTCG 121
Query 271 TCCATTTCCGTATCGTCAATTTTCTGAGCTCACGAAAGCTAATGGGAGACGTGCTTTTCT 330
|| ||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||||
Sbjct 122 TCAATTTCCGTACCGTCAATATTCTGAACTCACGAAAGCTAATGGAAGACGTGCCTTTCT 181
Query 331 CGTTGATACATTGGCTCTGGTGAGGAGTCTTGAAGCTCAAGGAGTTCCATCGAAACAAGC 390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 CGTTGATACATTGGCTCTGGTGAGGAGTCTTGAAGCTCAAGGTGTTCCATCGAAACAAGC 241
Query 391 TGAGGCAATAACTTCTGCTATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTGA 450
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGAGGCAATAACTTCTGCCATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTGA 301
Query 451 GTCTTTTGTGTCGAAAGCGGAAATGCAGAAGATTGAAATGATTCAAGATTCAAATTTATC 510
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 GTCTTTTGTGTCAAAAGCAGAAATGCAGAAGATTGAAATGATTCAAGATTCAAATTTGTC 361
Query 511 GAAATTTAAATCTGAAGTCAAAAGTTCTCAGGAGCATCATTTTACTGTATTGCAACGTGA 570
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 AAAATTTAAATCTGAAGTAAAAAGTTCTCAGGAGCATCACTTTACTGTATTGCAACGTGA 421
Query 571 GACTGAAAAATTGAGAGGCGATATAGAGAAGATGCGAAGTGAGCTAAGGTACGAAATTGA 630
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 422 GACAGAAAAACTGAGAGGCGATATAGAGAAGATGCGAAGTGAGCTGAGGTACGAAATTGA 481
Query 631 TAAGGTCACAGCGGGACAACGCTTGGATTTGAATCTTGAAAGAGGCCGAATACGTGATGA 690
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 482 TAAGGTCACAGCTGGACAACGCTTGGATTTGAATCTTGAAAGAGGTCGAATACGCGATGA 541
Query 691 GCTAGCTAATCAGAATACCGAAACAACAAACCTCACAAACAAGCTTGACAGGGAAATTCA 750
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 542 GCTAGCTAATCAGAATACCGAAACAACAAATCTCACAAACAAGCTTGACAGGGAAATTCA 601
Query 751 TGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTAC 810
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCGCTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTAC 661
Query 811 ACTTGTGTCGATTTCAGCAGTGGGACTCGCCGTCCTTCGTATCATGATTTAAAGTACGAT 870
|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 662 ACTTGTGTCGATTTCAGCTGTGGGACTCGCCGTCCTTCGCATCATGATTTA--GTACGAT 719
Query 871 CCCAACACTCAA 882
||||||||||||
Sbjct 720 CCCAACACTCAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5