BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16510.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480541 jgi|Araly1|480541|fgenesh2_kg.3__3242__AT2G16510.1 1288 0.0
Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581 643 0.0
> Ahg480541 jgi|Araly1|480541|fgenesh2_kg.3__3242__AT2G16510.1
Length=944
Score = 1288 bits (697), Expect = 0.0
Identities = 873/954 (92%), Gaps = 28/954 (3%)
Strand=Plus/Plus
Query 14 AAAATCCAATtctctc-tctctcCCTCCAGATTCAAACGATCCGATCCAAAACTT-TGAG 71
|||||||||||||||| || |||||||||||||||||||||| ||||| ||| || | ||
Sbjct 2 AAAATCCAATTCTCTCGTC-CTCCCTCCAGATTCAAACGATCAGATCC-AAAGTTGTTAG 59
Query 72 ATCCGAGAAGATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGG 131
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 60 ATCCGAGAAGATGTCTACATTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTCGG 119
Query 132 CGCCGCCGCCGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGG 191
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 120 CGCCGCCGCCGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCGAAGAGTGG 179
Query 192 TGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCC 251
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 180 TGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTGATGAAGTCTATTGTTCC 239
Query 252 TGTGGTTATGGCTGGTGTTTTGGGTATTTATGGACTTATTATTGCTGTTATCATTAGTAC 311
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 240 TGTTGTTATGGCTGGTGTTTTGGGTATTTATGGACTTATTATTGCTGTTATTATCAGTAC 299
Query 312 CGGCATCAATCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTC 371
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CGGTATTAATCCTAAGGCTAAGTCTTATTACCTATTTGACGGATACGCTCACCTTTCGTC 359
Query 372 TGGTCTTGCTTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGA 431
|||||||||||||||||||||||| || |||||||||||||| ||||||||||| || ||
Sbjct 360 TGGTCTTGCTTGTGGTCTTGCTGGGCTATCAGCTGGTATGGCCATTGGAATTGTCGGAGA 419
Query 432 TGCGGGTGTTAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCT 491
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGCGGGTGTTAGGGCAAATGCGCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCT 479
Query 492 TATCTTTGCGGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATTTTATCTTCTCG 551
||||||||||||||| || |||||||||||||| ||||||||||| || |||||||||||
Sbjct 480 TATCTTTGCGGAAGCACTTGCTCTATACGGCCTTATTGTAGGCATTATCTTATCTTCTCG 539
Query 552 AGCTGGTCAGTCCAGAGCAGAATGAGAGCACAAACAAATGTTAAAATTTCCAGGTACTTC 611
|||||||||||||||||||||||||||||||||||| |||| | | || |||||||||||
Sbjct 540 AGCTGGTCAGTCCAGAGCAGAATGAGAGCACAAACATATGTCACAGTT-CCAGGTACTTC 598
Query 612 CTTATCGATCAACTTATAAGTGCGGTATGTAGTATCGGGAGCCGATATTTTGTGGATTCT 671
||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 599 CTTATCGATCAACTTTTGTGTGTGGTATGTGGTATCGGGAGCCGATATTTTGTGGATTCT 658
Query 672 TGG-T-TTGG---G--AAGCAGATGTTGCCACCTCGCTTTCCTT-GGTTGGTGGTTACTT 723
||| | |||| | |||||||| | ||||||| ||||| || ||||| ||||| |||
Sbjct 659 TGGATCTTGGTTTGGGAAGCAGATCT-GCCACCTA-CTTTC-TTCGGTTGCTGGTTGCTT 715
Query 724 GAGTGTAGGATGTTATTTGGTT-GGTACGGTAATaaaaaaaaGAGCTTGGCATTTGTTTT 782
|||||||||||||||||| ||| ||| || ||||||||||| ||||||||||||||||||
Sbjct 716 GAGTGTAGGATGTTATTTTGTTTGGTTCGTTAATAAAAAAA-GAGCTTGGCATTTGTTTT 774
Query 783 GTATTCTTGTATTGTCTGCATCTGTCTTGATGAACTTGATAATATTTTGTTTGTAAAGAA 842
|||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 775 GTATTCTTGTATCGTCCGCATTTGTCTTGTTGAACTTGATAATATTTTGTTTGTAAAGAA 834
Query 843 GTTTGCTTCTGATACCATCTTTGAATGTTATGAGATTAAT----GCTAGCTTTTCTACTG 898
|| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 835 GTGTGCTTCTGATACCATCTTTGAATGTTATGAGATTAATCTTTGATAGCTTTTCCACTG 894
Query 899 AACAAAACATTATATTTTCGGAGGGTG-TTAAGCAAAGTAATG-AAAATATTAA 950
||||||||||||||| ||||| || ||||||||||||| | ||||||||||
Sbjct 895 AACAAAACATTATATAA--GGAGG-TGGTTAAGCAAAGTAA-GCAAAATATTAA 944
> Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581
Length=495
Score = 643 bits (348), Expect = 0.0
Identities = 448/497 (90%), Gaps = 4/497 (1%)
Strand=Plus/Plus
Query 82 ATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGCGCCGCCGCC 141
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
Query 142 GCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTG 201
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
Query 202 GCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGTTATG 261
||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
Query 262 GCTGGTGTTTTGGGTATTTATGGACTT-ATTATTGCTGTTATCATTAGTACCGGCATCAA 320
||||||||||||||||| |||||| || || |||||||||||||| |||||||| || ||
Sbjct 181 GCTGGTGTTTTGGGTATCTATGGA-TTGATCATTGCTGTTATCATCAGTACCGGGATTAA 239
Query 321 TCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGC 380
|| |||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 240 CCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGC 299
Query 381 TTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGATGCGGGTGT 440
||||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 300 TTGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGT 359
Query 441 TAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCTTATCTTTGC 500
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 360 CAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTCGGGATGATTCTTATCCTTATCTTTGC 419
Query 501 GGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATT-TTATCTTCTCGAGCTGGTC 559
|||||||||||||| ||||| || ||||| || ||||| || || || |||||||| |
Sbjct 420 AGAAGCGCTCGCTCTCTACGGGCTTATTGTGGGAATCATCCTT-TCCTCACGAGCTGGCC 478
Query 560 AGTCCAGAGCAGAATGA 576
|||| ||||| ||||||
Sbjct 479 AGTCTAGAGCGGAATGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5