BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G16520.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325169 jgi|Araly1|325169|fgenesh1_pm.C_scaffold_6000389           315    3e-85
  Ahg896603 jgi|Araly1|896603|Al_scaffold_0005_569                     137    6e-32
  Ahg896604 jgi|Araly1|896604|Al_scaffold_0005_570                     130    1e-29


> Ahg325169 jgi|Araly1|325169|fgenesh1_pm.C_scaffold_6000389
Length=285

 Score =  315 bits (170),  Expect = 3e-85
 Identities = 234/265 (88%), Gaps = 4/265 (2%)
 Strand=Plus/Plus

Query  197  ATGGCATTGAAGCTAGGACTAACTGAAGCCGTGAGTTTGGGGATCACTCATATCTCAATC  256
            ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCATTGAAACGAGGACTAACCGAAGCCGTGAGTTTGGGGATCACTCATATCTCAATC  60

Query  257  TACTGCGATCATTTTCAGATTTTTGAACTGGTTATGTGGAGATCAGTGCCTGATAAAGAT  316
            ||||||||||||| ||| ||||||||||| || | | |||| || | |||||| ||||||
Sbjct  61   TACTGCGATCATTATCACATTTTTGAACTTGTCACGGGGAGTTCCGGGCCTGAGAAAGAT  120

Query  317  AGCATTGCAATGATAATGTATGATGTGCAACGCATAAGACAACAATTGACATCAAGCACA  376
            ||||||||  || ||||| |||||||||||||||  ||||||||| ||||||| ||||| 
Sbjct  121  AGCATTGCCTTGCTAATGAATGATGTGCAACGCACCAGACAACAACTGACATCTAGCACC  180

Query  377  CCTCTTCTGGTGACTGGAAATCAAACTAATAAG-TTAGCTTATGAACTTGCACTAG-AAA  434
            |||||||||||||||||| |||||||||||||| || |||||| |||||||| | | |||
Sbjct  181  CCTCTTCTGGTGACTGGAGATCAAACTAATAAGGTT-GCTTATAAACTTGCA-TCGGAAA  238

Query  435  CACTAGTTTCAGAAATCAGCATAAG  459
            |||| ||||| ||||||||||||||
Sbjct  239  CACTCGTTTCTGAAATCAGCATAAG  263


> Ahg896603 jgi|Araly1|896603|Al_scaffold_0005_569
Length=348

 Score =  137 bits (74),  Expect = 6e-32
 Identities = 140/171 (82%), Gaps = 7/171 (4%)
 Strand=Plus/Plus

Query  294  GGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTATGATGTGCAACGCATAA  353
            ||||||  | ||||||  |||| | || |||  || ||||| ||||||||||||||||||
Sbjct  11   GGAGATGTGCGCCTGAGCAAGAGAACACTGCGTTGCTAATGGATGATGTGCAACGCATAA  70

Query  354  GACAACAATTGACATCAAGCA-CACCTCTTCTGGTGACTGGAAATCAAACTAA-TAAGTT  411
            |||||||||||||||| |||| | ||| ||||| |||||| ||||||| |||| |   ||
Sbjct  71   GACAACAATTGACATCTAGCATC-CCTGTTCTGATGACTGAAAATCAAGCTAACT---TT  126

Query  412  AGCTTATGAACTTGCACTAGAAACACTAGTTTCAGAAATCAGCATAAGTAT  462
             |||||| |||||||| | |||||||| ||||| |||| ||||||| ||||
Sbjct  127  -GCTTATAAACTTGCATTGGAAACACTGGTTTCTGAAACCAGCATATGTAT  176


> Ahg896604 jgi|Araly1|896604|Al_scaffold_0005_570
Length=525

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 110/128 (86%), Gaps = 7/128 (5%)
 Strand=Plus/Plus

Query  332  ATGTATGATGTGCAACGCATAAGACAACAATTGACATCAAGCA-CACCTCTTCTGGTGAC  390
            ||| |||||||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct  1    ATGGATGATGTGCAACGCATAAGACAACAATTGACATCTAGCATC-CCTGTTCTGATGAC  59

Query  391  TGGAAATCAAACTAA-TAAGTTAGCTTATGAACTTGCACTAGAAACACTAGTTTCAGAAA  449
            || ||||||| |||| |   || |||||| |||||||| | ||||||||||||||  |||
Sbjct  60   TGAAAATCAAGCTAACT---TT-GCTTATAAACTTGCATTGGAAACACTAGTTTCTCAAA  115

Query  450  TCAGCATA  457
            ||||||||
Sbjct  116  TCAGCATA  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5