BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16530.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490202 jgi|Araly1|490202|fgenesh2_kg.6__3336__AT2G16530.2 1701 0.0
Ahg480542 jgi|Araly1|480542|fgenesh2_kg.3__3243__AT2G16530.2 1701 0.0
> Ahg490202 jgi|Araly1|490202|fgenesh2_kg.6__3336__AT2G16530.2
Length=1186
Score = 1701 bits (921), Expect = 0.0
Identities = 1089/1169 (93%), Gaps = 16/1169 (1%)
Strand=Plus/Plus
Query 113 TGGAATTGGAGATTGTGTGGTTGGTTAGAGGCGCTTGGATCACTGTTTGGATCGTCTCTA 172
||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 2 TGGAATTAGAGATTGTGTGGTTGGTTAGAGCCGCTTGGATCACCGTTTGGATCGTCTCGA 61
Query 173 TACTTCCTTTGGTGATTGCTTCGATACCCACTTCAAAGCTCAACTCTTTTCGTGAACTCG 232
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 62 TACTTCCTTTGGTGATTGCTTCGATACCCAGTTCAAAGCTTAACTCTTTTCGTGAACTCG 121
Query 233 TTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCTTCTTCTCAGAAGTTTACAATTC 292
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 122 TTTTGAGTTTCGCTGGGAGAGGCAAGATTCTTCACCCGTCGTCTCAGAAGTTTACAATTC 181
Query 293 CTCAGAAATGCTTTGCACACTTTTATGTTATTGGAGTGGTGTGGACAACTCTCCTGCTTG 352
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 CTCAGAAATGCTTTGCTCACTTTTATGTTATTGGAGTGGTGTGGACGACTCTCCTGCTTG 241
Query 353 CTGCAACTTGGATGTATGCTTGCAAAATGGCGCCTTTATCTTCTGAGGAGTTCCAGTTAT 412
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 CTGCAACTTGGATGTATGCTTGCAAAATGGCGCCTTTATCTTATGAGGAGTTCCAGTTAT 301
Query 413 CCGACATTGCAAGCCGTTTAGCCGGAGGTTCAGATGTTTTCTCCGTTCATAAATCTAATA 472
| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 302 CAGACATTGCAAGCCGTTTAGCCGGAGGTTCCCATGTTTTCTCCTTTTATAAATCTCATA 361
Query 473 TGACTCCTGTCGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTCTACTTCTTCTGATGG 532
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 362 TGACTCCTGTTGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTCTTCTTCTTCTGATGG 421
Query 533 AGATCCATGTCTTGAGACGGCTTATAGAGTCATTCTATGTTTTCAAATATAGCCCTTCTG 592
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 422 AAATCCATGTCTTGAGACGGCTTATAGAGTCATTTTATGTATTCAAATATAGCCCTTCCG 481
Query 593 CTCGGATGCACATTCTCGGTTATTTCGCAGGATTGTTTTTCTATGTAACAGCTCCTTTGT 652
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct 482 CTCGGATGCACATTCTCGGTTATTTCGCAGGATCGTTTTTCTATGTTACAGCGCCTTTGT 541
Query 653 CACTCTGCTCCAATATAGCTCCAGAGGTAGCAGGATTCGTAGGAAATCAAGTGGCTGAGT 712
|||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 542 CACTCTGCTCCAATATTGCTCCAGAGGTAGCAAGATTCGCCGGAAATCATGTGGCTGAGT 601
Query 713 TCATTGCTAATGGGAAAAGCCATACTTCAGCACCTGAATTTAACTTGTTATCATCTATAA 772
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 602 TCATTGCTAATGGGAAAAGCCATACTTCAGCACCTGAATTTAATTTGTTATTATCTATAA 661
Query 773 GTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTTTGGGGAT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 662 GTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTCTGGGGAT 721
Query 833 GGATACATCAGCGCCGCTGTCACGCCATTCTTGGATCGCTCCGGGAAAATCCGAGCCAAG 892
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 722 GGATACATCAACGCCGCTGTCATGCCATTCTTGGATCGCTCCGGGAAAATCCGAGTCAAG 781
Query 893 CGAAAGAGTACATTATTCCGTATGGAGATTGGTTTGGGATGGTGTCTTCTCCACATTTCT 952
||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 782 CGAAAGAGTACATAATTCCGTATGGAGATTGGTTTGGGATGGTCTCTTGTCCGCATTTCC 841
Query 953 TGGCAGAAATTGTTTTGTATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAACCA 1012
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGGCAGAAATCGTTTTGTATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAACCA 901
Query 1013 TCTGGTTACTCTTTGGTTTTGTGGCTGCTAATCTGACATACGCGGCTGGAGAAACGCACC 1072
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 902 TCTGGTTACTCTTTGGTTTCGTGGCTGCTAATCTGACATACGCCGCTGGAGAAACGCACC 961
Query 1073 GTTGGTATCTCCGGAAGTTTGAGAATTATCCGGCTAATCGGCATGCCATTTTCCCTTATG 1132
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 GTTGGTATCTCCGGAAGTTTGAGAATTATCCGGCTAATCGCCATGCCATTTTCCCTTATC 1021
Query 1133 TCTACTAAATGGTTAAGAGATACAATGGTTGTCTTCTGTAAATGCTGAATTCTGAACATC 1192
||||||||||||||||||||| | || |||||||||| |||||||| |||
Sbjct 1022 TCTACTAAATGGTTAAGAGAT----T------CT---GTAAATGCTGGATTCTGAAGATC 1068
Query 1193 GAAGATTTGTGGTGCTTTGTTATGTTTTAATTTAGCTATGCTTCTCAGTTCTCATCTTCT 1252
|||||||||||||| ||||| |||| ||||| ||| | |||||| | |||||||| | |
Sbjct 1069 AAAGATTTGTGGTGCCTTGTTGTGTTGTAATT-AGCCACGCTTCTTAATTCTCATCAT-T 1126
Query 1253 TTATA-CTGGTGCTTTTTTCGTTTCAAGA 1280
|| | ||| | |||||||| ||||||||
Sbjct 1127 ATAAAACTGTTACTTTTTTCATTTCAAGA 1155
> Ahg480542 jgi|Araly1|480542|fgenesh2_kg.3__3243__AT2G16530.2
Length=1149
Score = 1701 bits (921), Expect = 0.0
Identities = 1076/1150 (94%), Gaps = 14/1150 (1%)
Strand=Plus/Plus
Query 113 TGGAATTGGAGATTGTGTGGTTGGTTAGAGGCGCTTGGATCACTGTTTGGATCGTCTCTA 172
|||| || |||||||| ||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 2 TGGAGTTAGAGATTGTTTGGTTGGTTAGAGCCGCTTGGATCACCGTTTGGGTCGTCTCTA 61
Query 173 TACTTCCTTTGGTGATTGCTTCGATACCCACTTCAAAGCTCAACTCTTTTCGTGAACTCG 232
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 62 TACTTCCTTTGGTGATTGCTTCGATACCCACTTCAAAGCTTAACTCTTTTCGTGAACTCG 121
Query 233 TTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCTTCTTCTCAGAAGTTTACAATTC 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 122 TTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCTTCTTCTCAGAAGTTTACAGTTC 181
Query 293 CTCAGAAATGCTTTGCACACTTTTATGTTATTGGAGTGGTGTGGACAACTCTCCTGCTTG 352
| ||||| | |||||| ||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 182 CACAGAAGTTCTTTGCTCACTTCTATGTGATTGGAGTGGTGTGGACGACTCTTCTGCTTG 241
Query 353 CTGCAACTTGGATGTATGCTTGCAAAATGGCGCCTTTATCTTCTGAGGAGTTCCAGTTAT 412
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 242 CTGCAACTTGGATGTATGCTTGCGAAATGGCGCCTTTATCTTCTGAGGAGTTCCAGTTAT 301
Query 413 CCGACATTGCAAGCCGTTTAGCCGGAGGTTCAGATGTTTTCTCCGTTCATAAATCTAATA 472
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 302 CCGACATTGCAAGCCGTTTAGCCGGAGGTTCAGATGTTTTCTCTTTTCATAAATCTCATA 361
Query 473 TGACTCCTGTCGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTCTACTTCTTCTGATGG 532
|||||||||| ||| |||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 362 TGACTCCTGTTGAGGATCGGTTTGAAGTGTGGCGAGCGGTATTTCTACTTCTTGTGATGG 421
Query 533 AGATCCATGTCTTGAGACGGCTTATAGAGTCATTCTATGTTTTCAAATATAGCCCTTCTG 592
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 422 AGATTCATGTCTTGAGACGGGTTATAGAGTCATTCTATGTATTCAAATATAGCCCTTCCG 481
Query 593 CTCGGATGCACATTCTCGGTTATTTCGCAGGATTGTTTTTCTATGTAACAGCTCCTTTGT 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 482 CTCGGATGCACATTCTCGGTTATTTCGCAGGATTGTTTTTCTATGTAACAGCACCTTTGT 541
Query 653 CACTCTGCTCCAATATAGCTCCAGAGGTAGCAGGATTCGTAGGAAATCAAGTGGCTGAGT 712
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 542 CACTCTGCTCCAATATTGCTCCAGAGGTAGCAAGATTTGTAGGAAATCAAGTGGCTGAGT 601
Query 713 TCATTGCTAATGGGAAAAGCCATACTTCAGCACCTGAATTTAA-CTT-GTTATCATCTAT 770
||||||||||||||||||| |||||||||||||||||| |||| || || || | |||
Sbjct 602 TCATTGCTAATGGGAAAAGTCATACTTCAGCACCTGAA-TTAAGTTTAGTAAT-GTGTAT 659
Query 771 AAGTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTTTGGGG 830
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 660 AAGTCCTTTGATGAAGCTTGGATCAGTCCAGTGGATTGGTGGAGCCATTTTTCTCTGGGG 719
Query 831 ATGGATACATCAGCGCCGCTGTCACGCCATTCTTGGATCGCTCCGGGAAAATCCGAGCCA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGGATACATCAGCGCCGCTGTCACGCCATTCTTGGATCGCTCCGGGAAAATCCGAGCCA 779
Query 891 AGCGAAAGAGTACATTATTCCGTATGGAGATTGGTTTGGGATGGTGTCTTCTCCACATTT 950
||||||||||||||| ||||||||||| |||||||| ||||||| |||||||| |||||
Sbjct 780 AGCGAAAGAGTACATAATTCCGTATGGGGATTGGTTCAGGATGGTCTCTTCTCCTCATTT 839
Query 951 CTTGGCAGAAATTGTTTTGTATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAAC 1010
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTGGCAGAAATCGTTTTATATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAAC 899
Query 1011 CATCTGGTTACTCTTTGGTTTTGTGGCTGCTAATCTGACATACGCGGCTGGAGAAACGCA 1070
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CATCTGGTTACTCTTTGGTTTCGTGGCTGCTAATCTGACATACGCGGCTGGAGAAACACA 959
Query 1071 CCGTTGGTATCTCCGGAAGTTTGAGAATTATCCGGCTAATCGGCATGCCATTTTCCCTTA 1130
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 960 CCGTTGGTATCTCCGAAAGTTTGAGGATTATCCGGCTAATCGGCATGCCATTTTCCCTCA 1019
Query 1131 TGTCTACTAAATGGTTAAGAGATACAATGGTTG--T----C-T-T--CTGTAAATGCTGA 1180
|||||||||| |||||||||||||||||||||| | | | | |||||||||||||
Sbjct 1020 TGTCTACTAACTGGTTAAGAGATACAATGGTTGAATATTTCATGTTTCTGTAAATGCTGA 1079
Query 1181 ATTCTGAACATCGAAGATTTGTGGTGCTTTGTTATGTTTTAATTTAGCTATGCTTCTCAG 1240
||| |||| ||| |||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1080 ATTTTGAAGATCAAAGATTTGTGGTGCTTTGTTGTGTTATAATTTAGCTATGCTTCTCAA 1139
Query 1241 TTCTCATCTT 1250
||||||||||
Sbjct 1140 TTCTCATCTT 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5