BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16570.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480544 jgi|Araly1|480544|fgenesh2_kg.3__3245__AT2G16570.1 2719 0.0
Ahg353351 jgi|Araly1|353351|fgenesh1_pg.C_scaffold_7000524 1524 0.0
> Ahg480544 jgi|Araly1|480544|fgenesh2_kg.3__3245__AT2G16570.1
Length=1893
Score = 2719 bits (1472), Expect = 0.0
Identities = 1640/1721 (95%), Gaps = 11/1721 (1%)
Strand=Plus/Plus
Query 58 TTTTTGTCTTCCATGGCGGCCACAACAAGCTTCTCCTCTTCCCTCTCTTTAATCACTAAA 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 TTTTTGTCTTCCATGGCGGCCACAACAAGCTTCTCCTCTTCCCTCTCTTTAATCTCAAAA 60
Query 118 CCAAACAATTCTTCTTACACCAATCAAcctctccctctcttccccaaacccttccttaaa 177
|||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 61 CCAAACAA-TC--CTTACACCAATAAACCTCTCCTTCTCTTCCCCAAACCCTTCCTTAAA 117
Query 178 cctccccatctctctctccttccttctcccctctcctctcctcctccttcactcatccat 237
||||| ||||||||||||||||||||| || ||| ||| | | |||||||||||||||||
Sbjct 118 CCTCCTCATCTCTCTCTCCTTCCTTCTTCCATCT-CTC-CGT-CTCCTTCACTCATCCAT 174
Query 238 ggagtctcctcctacttctcctctccttcaccatccGAAGACAATTCTCATACCCCTTTT 297
|||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 175 GGAGTCTCTTCCTACTTCTCCTCTCCTTCACCAACCGAAGACCATTCTCATACTCCTTTT 234
Query 298 GATTACCACAACGACGAAGACGACGAAAAGCCTCGAGAAGAGTGCGGTGTCGTTGGAATC 357
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 235 GATT---ACAACGACGAAGACGACGAAAAGCCTCGAGAAGAGTGCGGTGTCGTCGGAATC 291
Query 358 TATGGAGATCCAGAAGCTTCACGGCTCTGTTACTTAGCTCTCCACGCACTTCAACATCGT 417
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TACGGCGATCCAGAAGCTTCACGGCTCTGTTACTTAGCTCTCCACGCACTTCAACATCGT 351
Query 418 GGTCAAGAAGGTGCAGGTATTGTAACAGTTAGTC-CCGAGAAAGTTCTTCAAACCATTAC 476
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 352 GGTCAAGAAGGTGCAGGTATTGTAACAGTTAG-CAATGAAAAAGTTCTTCAAACCATTAC 410
Query 477 AGGTGTTGGTTTAGTCTCTGAGGTTTTCAACGAATCAAAACTTGATCAATTACCTGGTGA 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 411 AGGTGTTGGTTTAGTCTCTGAGGTTTTCAACGAATCCAAACTTGATCAATTACCTGGTGA 470
Query 537 ATTTGCTATTGGTCATGTTCGTTACTCAACAGCTGGAGCTTCTATGCTCAAGAACGTTCA 596
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 ATTCGCTATTGGCCATGTTCGTTACTCAACTGCTGGAGCTTCTATGCTCAAGAACGTTCA 530
Query 597 GCCTTTCGTCGCCGGTTATCGATTCGGTTCTATCGGTGTTGCCCACAATGGTAATTTAGT 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 531 GCCTTTCGTCGCCGGTTATCGATTCGGTTCAATCGGTGTTGCCCACAATGGTAATTTAGT 590
Query 657 AAATTACAAAACTTTGAGAGCTATGCTTGAAGAGAACGGTTCTATCTTCAATACTAGCTC 716
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 AAATTACAAAACTTTGAGAGCTATGCTTGAAGAGAACGGTTCTATTTTCAATACTAGCTC 650
Query 717 TGATACTGAGGTTGTGCTTCATTTGATTGCTATTTCTAAAGCTAGACCtttttttATGAG 776
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 651 TGATACTGAGGTTGTGCTTCATTTGATTGCGATTTCTAAAGCTAGACCGTTTTTTATGAG 710
Query 777 GATTATTGATGCTTGTGAGAAACTTCAAGGTGCTTATTCAATGGTGTTTGTTACTGAGGA 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 GATTATTGATGCTTGTGAGAAACTTCAAGGTGCTTATTCAATGGTTTTTGTTACTGAGGA 770
Query 837 TAAGCTTGTTGCTGTTCGTGATCCTTATGGGTTTAGACCGTTAGTTATGGGTAGGAGAAG 896
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 771 TAAGCTTGTTGCTGTTCGTGATCCTTATGGGTTTAGACCATTAGTAATGGGTAGGAGAAG 830
Query 897 TAATGGAGCTGTTGTTTTCGCTTCGGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TAATGGAGCTGTTGTTTTCGCTTCGGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTA 890
Query 957 TGAGAGAGAGGTTTATCCTGGTGAGGTTTTGGTTGTGGATAAGGATGGTGTCAAGTCTCA 1016
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 891 TGAGAGAGAGGTTTATCCTGGGGAGGTTTTGGTTGTGGATAAGGATGGTGTGAAGTCTCA 950
Query 1017 GTGTTTGATGCCCAAGTTTGAGCCTAAGCAATGTATTTTCGAACATATCTACTTCTCGTT 1076
|||||||||||| |||||||||||||||||||| |||||||||||||| || || |||||
Sbjct 951 GTGTTTGATGCCGAAGTTTGAGCCTAAGCAATGCATTTTCGAACATATTTATTTTTCGTT 1010
Query 1077 GCCTAACTCGATTGTGTTTGGTCGGTCCGTGTATGAATCTAGGCATGTTTTTGGTGAGAT 1136
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1011 GCCTAACTCGATTGTGTTTGGTCGGTCTGTGTATGAATCTAGGCATGTTTTTGGGGAGAT 1070
Query 1137 TTTGGCTACCGAGTCGCCTGTTGAGTGCGATGTTGTCATCGCTGTGCCTGACTCTGGTGT 1196
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 TTTGGCTGCAGAGTCGCCTGTTGAGTGCGATGTTGTGATCGCTGTGCCTGACTCTGGTGT 1130
Query 1197 TGTGGCTGCTCTCGGGTACGCTGCGAAATCCGGTGTGCCGTTTCAACAGGGGTTGATTAG 1256
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGTGGCTGCTCTTGGTTATGCTGCGAAATCCGGTGTGCCGTTTCAACAGGGGTTGATTAG 1190
Query 1257 GTCTCATTACGTAGGGAGGACGTTCATTGAGCCGTCACAGAAGATTAGAGACTTTGGTGT 1316
||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1191 GTCTCATTATGTAGGGAGGACTTTCATTGAGCCGTCGCAGAAGATCAGAGACTTTGGTGT 1250
Query 1317 GAAGCTTAAGTTGTCTCCTGTTCGTGGTGTTTTAGAAGGGAAGAGAGTTGTTGTGGTGGA 1376
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1251 GAAGCTTAAGCTGTCTCCTGTTCGTGGGGTTTTAGAAGGGAAGAGAGTTGTTGTGGTGGA 1310
Query 1377 TGATTCGATTGTTAGAGGCACAACTTCGTCTAAGATTGTGCGTTTATTGAGAGAAGCTGG 1436
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1311 TGATTCGATTGTGAGAGGCACAACTTCGTCTAAGATTGTGCGTTTATTGAGAGAAGCGGG 1370
Query 1437 TGCAAAAGAGGTTCATATGAGGATTGCTAGTCCTCCTATAGTAGCTTCTTGTTACTATGG 1496
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1371 TGCAAAAGAGGTTCATATGAGGATTGCTAGTCCACCTATTGTAGCTTCTTGTTACTATGG 1430
Query 1497 TGTTGATACGCCTAGCTCAGAGGAGTTGATATCCAATAGATTGAGTGTTGAGGAGATTAA 1556
|| || || ||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1431 AGTGGACACACCTAGCTCAGAGGAGTTAATATCCAACAGATTGAGAGTTGAGGAGATTAA 1490
Query 1557 CGAGTTCATCGGGAGTGACTCTCTTGCGTTTCTATCGTTCGATACGTTGAAGAAACACTT 1616
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1491 CGAGTTCATCGGGAGCGACTCTCTTGCGTTTCTATCTTTCGATACCTTGAAGAAACACTT 1550
Query 1617 GGGGAAAGACTCTAAGAGCTTCTGCTATGCGTGCTTCACGGGTGACTATCCCGTGAAGCC 1676
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1551 AGGGAAAGACTCTAAGAGCTTCTGCTATGCGTGCTTCACAGGTGACTATCCCGTGAAGCC 1610
Query 1677 AACAGAAGTTAAGGTGAAACGAGGAGGAGGGGATTTCATTGATGACGGTCTCGTTGGTAG 1736
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1611 CACAGAAGTTAAGGTGAAACGAGGGGGAGGAGATTTCATTGATGACGGTCTCGTTGGTAG 1670
Query 1737 CTTCGAAAACATCGAAGCAGGTTGGGTTCGATAATGAGAGA 1777
|||||||||||||||||||||||||||||||||||| ||||
Sbjct 1671 CTTCGAAAACATCGAAGCAGGTTGGGTTCGATAATGTGAGA 1711
> Ahg353351 jgi|Araly1|353351|fgenesh1_pg.C_scaffold_7000524
Length=2364
Score = 1524 bits (825), Expect = 0.0
Identities = 1266/1476 (86%), Gaps = 41/1476 (3%)
Strand=Plus/Plus
Query 305 ACAACGACGAAGACGACGAAAAGCCTCGAGAAGAGTGCGGTGTCGTTGGAATCTATGGAG 364
||||||| || | ||||| |||||||| |||||||| || || || |||||||| || |
Sbjct 224 ACAACGATGATTATGACGAGAAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGCG 283
Query 365 ATC-CAGAAGCTTCACGGCTCTGTTACTTAGCTCTCCACGCACTTCAACATCGTGGTCAA 423
| | | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 284 A-CTCTGAAGCTTCACGGCTCTGTTACTTAGCTCTCCACGCGCTTCAGCATCGAGGTCAA 342
Query 424 GAAGGTGCAGGTATTGTAACAGTTAGTCCCGAGAAAGTTCTTCAAACCATTACAGGTGTT 483
||||||||||||||||| || |||||| || || |||||||| |||||||||||||||
Sbjct 343 GAAGGTGCAGGTATTGTTACCGTTAGTAAAGATAAGGTTCTTCAGACCATTACAGGTGTT 402
Query 484 GGTTTAGTCTCTGAGGTTTTCAACGAATCAAAACTTGATCAATTACCTGGTGA-ATTTGC 542
||||| |||||||||||||||| |||||| ||||| || || ||||| || || | | ||
Sbjct 403 GGTTTGGTCTCTGAGGTTTTCAGCGAATCCAAACTCGACCAGTTACCAGGAGACA-TAGC 461
Query 543 TATTGGTCATGTTC-GTTACTCAACAGCTGGAGCTTCTATGCTCAAGAACGTTCAGCC-T 600
|||||||||| || | ||||| || ||||| |||||||||||||||| |||||||| |
Sbjct 462 CATTGGTCATG-TCAGGTACTCTACGGCTGGTTCTTCTATGCTCAAGAATGTTCAGCCGT 520
Query 601 TTCGTCGCCGGTTATCGATTCGGTTCTATCGGTGTTGCCCACAATGGTAATTTAGTAAAT 660
|| || || ||||||||||| || ||| | |||||||| |||||||| |||||||| |||
Sbjct 521 TT-GTTGCTGGTTATCGATTTGGCTCTGTTGGTGTTGCTCACAATGGGAATTTAGTGAAT 579
Query 661 TACA--AAACTTTGAGAGCT-ATGCTT-GAAGAGAACGGTTCTATCTTCAATACTAGCTC 716
|||| ||| ||||||||| || || || || || ||||| || ||||||||||||||
Sbjct 580 TACACGAAA--TTGAGAGCTGAT--TTAGAGGAAAATGGTTCGATTTTCAATACTAGCTC 635
Query 717 TGATACTGAGGTTGTGCTTCATTTGATTGCTATTTCTAAAGCTAGACCtttttttATGAG 776
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 636 TGATACTGAGGTTGTGCTTCATTTGATTGCGATTTCTAAAGCTAGACCCTTTTTCATGAG 695
Query 777 GATTATTGATGCTTGTGAGAAACTTCAAGGTGCTTATTCAATGGTGTTTGTTACTGAGGA 836
|||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 696 GATTGTTGATGCTTGTGAGAAGCTTCAAGGTGCTTACTCGATGGTGTTTGTTACTGAGGA 755
Query 837 TAAGCTTGTTGCTGTTCGTGATCCTTATGGGTTTAGACCGTTAGTTATGGGTAGGAGAAG 896
||||||||| ||||||||||| || |||||||||| || |||||||||||||| |||||
Sbjct 756 TAAGCTTGTCGCTGTTCGTGACCCACATGGGTTTAGGCCTTTAGTTATGGGTAGAAGAAG 815
Query 897 TAATGGAGCTGTTGT-TTTCGCTTCGGAGACTTGTGCTCTTGATTTGATTGAAGCTACTT 955
||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 816 TAATGGAGCTGTTGTCTTT-GCTTCTGAGACTTGTGCTCTTGATTTGATTGAGGCTACAT 874
Query 956 ATGAGAGAGAGGTTTATCCTGGTGAGGTTTTGGTTGTGGATAAGGATGGTGTCAAGTCTC 1015
||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||
Sbjct 875 ATGAGAGAGAGGTTTATCCTGGTGAGGTTTTGGTTGTGGATAAAGACGGTGTTAAATGTC 934
Query 1016 AGTGTTTGATGCC-CAAGTTTGAGCCTAAGCAATGTATTTTCGAACATATCTACTTCTCG 1074
||||||||||||| || | |||||||||||||| |||||||||||||| |||||||||
Sbjct 935 AGTGTTTGATGCCTCATCCT-GAGCCTAAGCAATGCATTTTCGAACATATATACTTCTCG 993
Query 1075 TTGCCTAACTCGATTGTGTTTGGTCGGTCCGTGTATGAATCTAGGCATGTTTTTGGTGAG 1134
||||| || |||||||| ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 994 TTGCCCAATTCGATTGTCTTTGGTCGGTCTGTGTATGAGTCTAGGCATGTCTTTGGTGAG 1053
Query 1135 ATTTTGGCTACCGAGTCGCCTGTTGAGTGCGATGTTGTCATCGCTGTGCCTGACTCTGGT 1194
||||| || || ||||| |||||||| |||||||| || ||||||||||||||||| |||
Sbjct 1054 ATTTTAGCCACTGAGTCACCTGTTGATTGCGATGTGGTGATCGCTGTGCCTGACTCGGGT 1113
Query 1195 GTTGTGGCTGCTCTCGGGTACGCTGCGAAATCCGGTGT-GCCGTTTCAACAGGGGTTGAT 1253
|||||||||||||| || ||||| || ||| | || || || |||||| || || |||||
Sbjct 1114 GTTGTGGCTGCTCTTGGTTACGCGGCTAAAGCTGGAGTTGC-GTTTCAGCAAGGTTTGAT 1172
Query 1254 TAGGTCTCATTACGTAGGGAGGACGTTCATTGAGCCGTCACAGAAGATTAGAGACTTTGG 1313
|||||||||||| || || ||||| |||||||||||||| ||||| || |||||||||||
Sbjct 1173 TAGGTCTCATTATGTTGGAAGGACTTTCATTGAGCCGTCTCAGAAAATCAGAGACTTTGG 1232
Query 1314 TGTGAAGCTTAAGTTGTCTCCTGTTCGTGGTGTTTTAGAAGGGAAGAGAGTTGTTGTGGT 1373
|||||||| || | || ||||| || || |||||||||||||| ||||||||||| ||
Sbjct 1233 AGTGAAGCTGAAACTATCGCCTGTCCGAGGAGTTTTAGAAGGGAAAAGAGTTGTTGTTGT 1292
Query 1374 GGATGATTCGATTGTTAGAGGCACAACTTCGTCTAAGATTGTGCGTTTATTGAGAGAAGC 1433
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1293 GGATGATTCGATTGTTAGAGGAACAACTTCGTCCAAGATTGTGCGTTTATTGAGAGAAGC 1352
Query 1434 TGGTGCAAAAGAGGTTCATATGAGGATTGCTAGTCCTCCTAT-AGTAGCTTCTTGTTACT 1492
||||| ||||||||||| |||||||| || ||||||||||| | | || ||||||||||
Sbjct 1353 GGGTGCGAAAGAGGTTCACATGAGGATAGCGAGTCCTCCTATTATT-GCATCTTGTTACT 1411
Query 1493 ATGGTGTTGATACGCCTAGCTCAGAGGAGTTGATATCCAATAG-ATTGAGTGTTGAGGAG 1551
| ||||| || |||||||||||| | ||||||||||| ||||| || ||||||||| ||
Sbjct 1412 ACGGTGTGGACACGCCTAGCTCAAATGAGTTGATATCGAATAGGAT-GAGTGTTGATGAA 1470
Query 1552 ATTAACGAGTT-CATCGGGA-GTGACTCTCTTGCGTTTCTATCGTTCGATACGTTGAAGA 1609
|| | || || |||||| | | || || ||||||||| | ||||| || ||||| ||||
Sbjct 1471 ATCAGGGA-TTACATCGG-ATGCGATTCCCTTGCGTTTTTGTCGTTTGAGACGTTAAAGA 1528
Query 1610 AACACTTGGGGAAAGACTCTAAGA-GCTTCTGCTATGCGTGCTTCAC-GGGTGACTATCC 1667
|||| |||||| |||| |||| || |||||||||| || |||||||| ||| ||||||||
Sbjct 1529 AACATTTGGGGGAAGATTCTA-GAAGCTTCTGCTACGCATGCTTCACTGGG-GACTATCC 1586
Query 1668 CGTGAAGCCAACAGAAGTTAAGGTGAAACGAGGAGGAGGGGATTTCATTGATGACGGTCT 1727
|||||||| ||||| | ||||||||| |||||||||| |||| || ||||| |||||
Sbjct 1587 GGTGAAGCCCACAGAGGATAAGGTGAAGCGAGGAGGAG---ATTTTATCGATGATGGTCT 1643
Query 1728 CGTTGGTAGCT-TCGAA-AACATCGAAGCAGGTTGG 1761
| |||| || || || ||||| |||| |||||||
Sbjct 1644 CCTTGG-AGGAATC-AACAACATTGAAGGAGGTTGG 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5