BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16580.1
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931483 jgi|Araly1|931483|scaffold_303940.1 569 9e-162
Ahg491179 jgi|Araly1|491179|fgenesh2_kg.7__612__AT4G34760.1 313 2e-84
Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 265 5e-70
> Ahg931483 jgi|Araly1|931483|scaffold_303940.1
Length=373
Score = 569 bits (308), Expect = 9e-162
Identities = 351/371 (95%), Gaps = 5/371 (1%)
Strand=Plus/Plus
Query 22 AAA-CCACCaaaaaacaaaaaTGTCCATTCTCAAGAAATCTACAAAACTGGCTCAAACAG 80
||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 1 AAACCCACCCAAAAACAAAAATGGCCATCCTTAAGAAATCTACAAAACTGGCTCAAACAG 60
Query 81 CAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTGGGGAAGAAGAATGGAGGAGGAG 140
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 61 CAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTAGGTAAGAAGAAT---GGAGGAG 117
Query 141 GATATGAAGAAGTTGATCTCCCACTTGATGTACCCAAGGGACACTTCCCTGTCTACGTAG 200
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 118 GATACGAAGAAGATGATCTCCCACTTGATGTACCAAAGGGACACTTCCCTGTCTATGTAG 177
Query 201 GACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGACCAATCTTGACTTCCAAT 260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGTCCAATCTTGACTTCCAAT 237
Query 261 GTCTCCTTAGAAGAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTCTCCTTAGAAGAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTC 297
Query 321 CTTGTGATGAACTCTTCTTTCAAGATCTGACTTCCATGATCCGATGAGATCTCAACAGTT 380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 298 CTTGTGATGAACTCTTCTTTCAAGATCTGACTTCCATGATCAGATGAGATCTCAAAAGTT 357
Query 381 TGAATAATCAA 391
| || || |||
Sbjct 358 TTAAGAA-CAA 367
> Ahg491179 jgi|Araly1|491179|fgenesh2_kg.7__612__AT4G34760.1
Length=658
Score = 313 bits (169), Expect = 2e-84
Identities = 297/357 (83%), Gaps = 16/357 (4%)
Strand=Plus/Plus
Query 16 TCTCTCAAACCACCaaaaaacaaaaaTGTCCATTCTCAAGAAATCTACAAAACTGGCTCA 75
|||||| || ||| |||||| ||||| | || | |||||| || ||||||| ||||
Sbjct 64 TCTCTC-AAGAACCCAAAAAC--AAATGGCTATAATAAAGAAAACTTCAAAACTCACTCA 120
Query 76 AACAGCAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTGGGGAAGAAGAATGGAGG 135
|||||||||||| | |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 121 AACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGAGG 180
Query 136 AGGAGGATATGAAGAAG-TTGATCTCCCACTTGATGTACCCAAGGGACACTTCCCTGTCT 194
| | || || || |||| ||| || |||||||| ||||| |||||||||||||||||||
Sbjct 181 A-G-GG-TACGATGAAGATTG-CCTTCCACTTGACGTACCAAAGGGACACTTCCCTGTCT 236
Query 195 ACGTAGGACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGAC-CAATCTTGAC 253
| || ||| | ||||||||||||||||| || || ||||| |||||||| | ||| |||
Sbjct 237 ATGTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACTC-ATCCTGAG 295
Query 254 TTCCAATGTCTCCTTAGAA-GAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCT 312
|| |||| ||| |||| || |||| |||||||| ||||| || || || |||||||||||
Sbjct 296 TTTCAATCTCT-CTTACAACGAGCCGAGGAAGAATTTGGATTCGACCACGACATGGGTCT 354
Query 313 CACCATTCCTTGTGATGAACTC-TTCTTTCAAGATC-TGACTTCCATGATCCGATGA 367
|||||||||||||||||||||| || |||||| | | | ||||||||||||||||||
Sbjct 355 CACCATTCCTTGTGATGAACTCGTT-TTTCAA-ACCCTAACTTCCATGATCCGATGA 409
> Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523
Length=2937
Score = 265 bits (143), Expect = 5e-70
Identities = 188/209 (90%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 492 ATGTTATTGGAGTTC-TAAAGCTTTCCAGGG-TCAGGTGAGTAGATTGAGAAGATATTGG 549
||||||||| || || |||||||||| ||| | ||||||||||||||||||||| |||
Sbjct 2440 ATGTTATTGCAG-TCACAAAGCTTTCCGGGGAGC-GGTGAGTAGATTGAGAAGATACTGG 2383
Query 550 ATCTCTGTGGG-AACGGGAAGTGGTTGATGTTTGATCACAATCACTGTACTCTTCAAGCT 608
|||| || ||| || |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2382 ATCTTTG-GGGCAAGGGGAAGTGGTTGCTGTCTGATCACAATCACTGTACTCTTCAAGCT 2324
Query 609 TCTCATCAATCAACACAGAGTCTGATAACTTCTCCTTAAAACCATCCCCCTCCATTTGTT 668
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2323 TCTCATCAATCAAAACAGAGTCTGATAACTTCTCCTTAAAACCCTCTCCCTCCATTTGTT 2264
Query 669 CCTCCCTGAGTTTCTCTGGTTCATCCTTT 697
|||| | |||||||||||||||||||||
Sbjct 2263 CCTCTGTAAGTTTCTCTGGTTCATCCTTT 2235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5