BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16592.1 Length=546 Score E Sequences producing significant alignments: (Bits) Value Ahg931488 jgi|Araly1|931488|scaffold_303945.1 435 2e-121 Ahg931486 jgi|Araly1|931486|scaffold_303943.1 401 2e-111 Ahg931485 jgi|Araly1|931485|scaffold_303942.1 370 6e-102 > Ahg931488 jgi|Araly1|931488|scaffold_303945.1 Length=351 Score = 435 bits (235), Expect = 2e-121 Identities = 308/343 (90%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATA-TTCATCGCCACCATCATA 134 |||||||||||||| ||| |||||||| |||| ||| |||| || ||||||| |||||| Sbjct 2 AGTTACTAATTCATTAGA-CATGAAGATCATTTCATGGATACTT-ATCGCCATCATCATG 59 Query 135 ATCTTGACATCATTTCCAGC-CACGATCAAAGTCGTCGGTGCCAAAAAAGATCTACCATT 193 |||||| |||||||||| || | ||||||||||||| |||||||||||||| |||||||| Sbjct 60 ATCTTGGCATCATTTCCTGCTC-CGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATT 118 Query 194 TTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCACGGAAGCAA 253 ||||||| |||||||||||||||||||| ||||||| ||| |||| |||| |||| Sbjct 119 TTGCAATCTGGAGCTTCTACCTTGCGTCGAACCTTTTCTTGTTAACGGTCGCGGAGGCAA 178 Query 254 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTCCT 313 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 179 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCT 238 Query 314 AATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGGTTTTGCAAAAT 373 | ||||||||||| | |||| ||||||||||||||||||||||||||||||||| | || Sbjct 239 TACGGCCAAGGAACATAACCTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATAT 298 Query 374 TTCCGTCCCTAATTGTCCAAAAATCTAGAGAT-ATAGGTTATG 415 |||||||||||||||||||||||||||||||| |||||||||| Sbjct 299 TTCCGTCCCTAATTGTCCAAAAATCTAGAGATTATAGGTTATG 341 > Ahg931486 jgi|Araly1|931486|scaffold_303943.1 Length=346 Score = 401 bits (217), Expect = 2e-111 Identities = 302/343 (88%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATA-TTCATCGCCACCATCATA 134 |||||||||||| | ||| |||||||| |||| ||| |||| || ||||||| |||||| Sbjct 2 AGTTACTAATTCGTTAGA-CATGAAGATCATTTCATGGATACTT-ATCGCCATCATCATG 59 Query 135 ATCTTGACATCATTTCCAGC-CACGATCAAAGTCGTCGGTGCCAAAAAAGATCTACCATT 193 |||||| |||||||||| || | ||||||||||||| |||||||||||||| |||||||| Sbjct 60 ATCTTGGCATCATTTCCTGCTC-CGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATT 118 Query 194 TTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCACGGAAGCAA 253 ||||||| ||||||||||||||||||| ||| ||| ||| |||| ||| |||| Sbjct 119 TTGCAATTTGGAGCTTCTACCTTGCGTTGAACCCTTTCTTGTTAACGGTCGTGGAGGCAA 178 Query 254 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTCCT 313 | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 179 ATTGCCTAAAGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCT 238 Query 314 AATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGGTTTTGCAAAAT 373 | ||||||||||| | |||| ||||||||||||||||||||||||||||||||| | || Sbjct 239 TACGGCCAAGGAACATAACCTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATAT 298 Query 374 TTCCGTCCCTAATTGTCCAAAAATCTAGAGAT-ATAGGTTATG 415 |||||||||||||||||||||||||||||||| |||||||||| Sbjct 299 TTCCGTCCCTAATTGTCCAAAAATCTAGAGATTATAGGTTATG 341 > Ahg931485 jgi|Araly1|931485|scaffold_303942.1 Length=286 Score = 370 bits (200), Expect = 6e-102 Identities = 226/238 (95%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 186 CTACCATTTTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCAC 245 |||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 48 CTACCATTTTGCGATGTGGAGCTTCTACCTTGCGTCCTACCTTTTCAAGTTCGCGGTCAC 107 Query 246 GGAAGC--A-AACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 302 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 GGAAGCAAACAACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 167 Query 303 TGTAGATTCCTAATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGG 362 |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 168 TGTAGATTCCTAGCGGCCAAGGATCGTAACCTGAACGCAGCTGCTCATAGAATATTCTGG 227 Query 363 TTTTGCAAAATTTCCGTCCCTAATTGTCCAAAAATCTAGAGATATAGGTTATGGTTTT 420 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 228 TTTTGCCAAATTTCCGTCCCTAATTGTCAAAAAATCTAGAGATATAGGTTATGGTTTT 285 Score = 78.7 bits (42), Expect = 4e-14 Identities = 51/55 (93%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATATTCATCGCCACCAT 130 |||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| Sbjct 2 AGTTACTAATGCATCAGA-CATGAAGACCATTCCATTGATATTCATC-CTACCAT 54 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19917217458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5