BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16592.1
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931488 jgi|Araly1|931488|scaffold_303945.1 435 2e-121
Ahg931486 jgi|Araly1|931486|scaffold_303943.1 401 2e-111
Ahg931485 jgi|Araly1|931485|scaffold_303942.1 370 6e-102
> Ahg931488 jgi|Araly1|931488|scaffold_303945.1
Length=351
Score = 435 bits (235), Expect = 2e-121
Identities = 308/343 (90%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATA-TTCATCGCCACCATCATA 134
|||||||||||||| ||| |||||||| |||| ||| |||| || ||||||| ||||||
Sbjct 2 AGTTACTAATTCATTAGA-CATGAAGATCATTTCATGGATACTT-ATCGCCATCATCATG 59
Query 135 ATCTTGACATCATTTCCAGC-CACGATCAAAGTCGTCGGTGCCAAAAAAGATCTACCATT 193
|||||| |||||||||| || | ||||||||||||| |||||||||||||| ||||||||
Sbjct 60 ATCTTGGCATCATTTCCTGCTC-CGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATT 118
Query 194 TTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCACGGAAGCAA 253
||||||| |||||||||||||||||||| ||||||| ||| |||| |||| ||||
Sbjct 119 TTGCAATCTGGAGCTTCTACCTTGCGTCGAACCTTTTCTTGTTAACGGTCGCGGAGGCAA 178
Query 254 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTCCT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCT 238
Query 314 AATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGGTTTTGCAAAAT 373
| ||||||||||| | |||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 239 TACGGCCAAGGAACATAACCTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATAT 298
Query 374 TTCCGTCCCTAATTGTCCAAAAATCTAGAGAT-ATAGGTTATG 415
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 TTCCGTCCCTAATTGTCCAAAAATCTAGAGATTATAGGTTATG 341
> Ahg931486 jgi|Araly1|931486|scaffold_303943.1
Length=346
Score = 401 bits (217), Expect = 2e-111
Identities = 302/343 (88%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATA-TTCATCGCCACCATCATA 134
|||||||||||| | ||| |||||||| |||| ||| |||| || ||||||| ||||||
Sbjct 2 AGTTACTAATTCGTTAGA-CATGAAGATCATTTCATGGATACTT-ATCGCCATCATCATG 59
Query 135 ATCTTGACATCATTTCCAGC-CACGATCAAAGTCGTCGGTGCCAAAAAAGATCTACCATT 193
|||||| |||||||||| || | ||||||||||||| |||||||||||||| ||||||||
Sbjct 60 ATCTTGGCATCATTTCCTGCTC-CGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATT 118
Query 194 TTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCACGGAAGCAA 253
||||||| ||||||||||||||||||| ||| ||| ||| |||| ||| ||||
Sbjct 119 TTGCAATTTGGAGCTTCTACCTTGCGTTGAACCCTTTCTTGTTAACGGTCGTGGAGGCAA 178
Query 254 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTCCT 313
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 ATTGCCTAAAGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCT 238
Query 314 AATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGGTTTTGCAAAAT 373
| ||||||||||| | |||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 239 TACGGCCAAGGAACATAACCTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATAT 298
Query 374 TTCCGTCCCTAATTGTCCAAAAATCTAGAGAT-ATAGGTTATG 415
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 TTCCGTCCCTAATTGTCCAAAAATCTAGAGATTATAGGTTATG 341
> Ahg931485 jgi|Araly1|931485|scaffold_303942.1
Length=286
Score = 370 bits (200), Expect = 6e-102
Identities = 226/238 (95%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 186 CTACCATTTTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCAC 245
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 48 CTACCATTTTGCGATGTGGAGCTTCTACCTTGCGTCCTACCTTTTCAAGTTCGCGGTCAC 107
Query 246 GGAAGC--A-AACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 302
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GGAAGCAAACAACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 167
Query 303 TGTAGATTCCTAATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGG 362
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 168 TGTAGATTCCTAGCGGCCAAGGATCGTAACCTGAACGCAGCTGCTCATAGAATATTCTGG 227
Query 363 TTTTGCAAAATTTCCGTCCCTAATTGTCCAAAAATCTAGAGATATAGGTTATGGTTTT 420
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 228 TTTTGCCAAATTTCCGTCCCTAATTGTCAAAAAATCTAGAGATATAGGTTATGGTTTT 285
Score = 78.7 bits (42), Expect = 4e-14
Identities = 51/55 (93%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATATTCATCGCCACCAT 130
|||||||||| ||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 2 AGTTACTAATGCATCAGA-CATGAAGACCATTCCATTGATATTCATC-CTACCAT 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19917217458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5