BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16594.1
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931488 jgi|Araly1|931488|scaffold_303945.1 440 2e-123
Ahg931486 jgi|Araly1|931486|scaffold_303943.1 418 1e-116
Ahg931485 jgi|Araly1|931485|scaffold_303942.1 257 3e-68
> Ahg931488 jgi|Araly1|931488|scaffold_303945.1
Length=351
Score = 440 bits (238), Expect = 2e-123
Identities = 286/309 (93%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATCAGTCCATGGATACTCATAGCCATCATCATGATGATCTTAGCATCATTTCCT 60
|||||||||| | |||||||||| || ||||||||| |||||||| ||||||||||||
Sbjct 21 ATGAAGATCATTTCATGGATACTTATCGCCATCATC---ATGATCTTGGCATCATTTCCT 77
Query 61 TCTCCGATCAAAGTCGTTGGTGCaaaaaaaGAGCTACCATTTTGCAATCTGGATCTTCTA 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 78 GCTCCGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATTTTGCAATCTGGAGCTTCTA 137
Query 121 GCTTGCGTCCAACCTTTTCTAGTTAACGGTCACGGAGGCAAACTGCCTAAAGGCTGTTGT 180
|||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct 138 CCTTGCGTCGAACCTTTTCTTGTTAACGGTCGCGGAGGCAAACTGCCTAATGGCTGTTGT 197
Query 181 GAGAAAATGAAAAAGTCAACATCATGCATGTGTAGATTCCTTACGGCCAAGGAACAGAAT 240
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 198 GAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCTTACGGCCAAGGAACATAAC 257
Query 241 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCTGTCCCCAATTGTCCA 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 258 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCCGTCCCTAATTGTCCA 317
Query 301 AAAATATAG 309
||||| |||
Sbjct 318 AAAATCTAG 326
> Ahg931486 jgi|Araly1|931486|scaffold_303943.1
Length=346
Score = 418 bits (226), Expect = 1e-116
Identities = 282/309 (91%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATCAGTCCATGGATACTCATAGCCATCATCATGATGATCTTAGCATCATTTCCT 60
|||||||||| | |||||||||| || ||||||||| |||||||| ||||||||||||
Sbjct 21 ATGAAGATCATTTCATGGATACTTATCGCCATCATC---ATGATCTTGGCATCATTTCCT 77
Query 61 TCTCCGATCAAAGTCGTTGGTGCaaaaaaaGAGCTACCATTTTGCAATCTGGATCTTCTA 120
|||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 78 GCTCCGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATTTTGCAATTTGGAGCTTCTA 137
Query 121 GCTTGCGTCCAACCTTTTCTAGTTAACGGTCACGGAGGCAAACTGCCTAAAGGCTGTTGT 180
||||||| |||| ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 138 CCTTGCGTTGAACCCTTTCTTGTTAACGGTCGTGGAGGCAAATTGCCTAAAGGCTGTTGT 197
Query 181 GAGAAAATGAAAAAGTCAACATCATGCATGTGTAGATTCCTTACGGCCAAGGAACAGAAT 240
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 198 GAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCTTACGGCCAAGGAACATAAC 257
Query 241 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCTGTCCCCAATTGTCCA 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 258 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCCGTCCCTAATTGTCCA 317
Query 301 AAAATATAG 309
||||| |||
Sbjct 318 AAAATCTAG 326
> Ahg931485 jgi|Araly1|931485|scaffold_303942.1
Length=286
Score = 257 bits (139), Expect = 3e-68
Identities = 195/221 (88%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 94 CTACCATTTTGCAATCTGGATCTTCTAGCTTGCGTCCAACCTTTTCTAGTTAACGGTCAC 153
|||||||||||| || |||| |||||| ||||||||| |||||||| |||| |||||||
Sbjct 48 CTACCATTTTGCGATGTGGAGCTTCTACCTTGCGTCCTACCTTTTCAAGTTCGCGGTCAC 107
Query 154 GGAGGC--A-AACTGCCTAAAGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGCATG 210
||| || | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 108 GGAAGCAAACAACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 167
Query 211 TGTAGATTCCTTA-CGGCCAAGGAACAG-AATCTAAACGCAGCTGCTCATAGAATATTCT 268
||||||||||| | |||||||||| | | || || |||||||||||||||||||||||||
Sbjct 168 TGTAGATTCCT-AGCGGCCAAGGATC-GTAACCTGAACGCAGCTGCTCATAGAATATTCT 225
Query 269 GGTTTTGCCATATTTCTGTCCCCAATTGTCCAAAAATATAG 309
|||||||||| ||||| ||||| ||||||| |||||| |||
Sbjct 226 GGTTTTGCCAAATTTCCGTCCCTAATTGTCAAAAAATCTAG 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10874342865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5