BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16595.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480545 jgi|Araly1|480545|fgenesh2_kg.3__3246__AT2G16595.1 1463 0.0
> Ahg480545 jgi|Araly1|480545|fgenesh2_kg.3__3246__AT2G16595.1
Length=1047
Score = 1463 bits (792), Expect = 0.0
Identities = 959/1036 (93%), Gaps = 25/1036 (2%)
Strand=Plus/Plus
Query 20 ATGGGCAAGGTGTTTCTAAATTGGT-AAGTCGGAAAACGACGTCGTTTACAAAATCCGAT 78
||| |||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||
Sbjct 1 ATGAGCAATGTGTTTCTAAATTGGTAAAG-C-CTAAACGACGTCGTTTATAAAGTCCGAT 58
Query 79 CTGCACACACACTCACATTCATATGTCGTTCTTCGTCAACGTCGGTGAAGAAAGCAT-AA 137
|| | | | | || ||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 59 CT----A-A-A--C-CA-TCACATGTCGTTCTTCGTCAACGCCGGTGAAGAAAGCATAAA 108
Query 138 ACACGTC-AAAAGACAAAAGCACC-TCTGTCTTCTTGCTTTCTTCGCCCTTTTACTTCAA 195
||||||| ||||||||||| |||| | |||| ||||| ||||||||||| |||||||||
Sbjct 109 ACACGTCAAAAAGACAAAACCACCTTTTGTCCTCTTGGTTTCTTCGCCC--TTACTTCAA 166
Query 196 -CCCACGAAGATCAATTCAACTAA-ACCAATCTCAAAACCATCATGAGGACAAGTTTTAG 253
||||||| |||||||||||| || |||||||||||||||||||||| ||||||| |||
Sbjct 167 CCCCACGACGATCAATTCAAC-AAGACCAATCTCAAAACCATCATGACGACAAGTACTAG 225
Query 254 ACTTCTCTT-CTTCGCTTTCCTTCTACTTGTCTCACCTTTTCTCAAAGTTGCTTTGTGCC 312
||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 226 ACTTCTCTTCCTT-GCTTTCCTTCTACTTGCCTCACCTTTCCTCAAAGTTGCTTTGTGCC 284
Query 313 AATCGGATTCGGAAGATTCTGGCTTCGAAGTTTCTGATGTTGGTGAAGAAGAGAGTGATG 372
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 285 AATCGGATTCGGAAGATTCTGGCTTTGAAGTTTCTGATGTTAGTGAAGAAGAGAGTGATG 344
Query 373 CAGAGGAAGTTTTTGGTTTGGAACTTACCTCAGCTCCTGGAATTGAAACCCTTTGCGTTT 432
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 345 CAGAGGAGGTTTTTGGTTTGGAACTTAGCTCAGCTCCTGAAATTGAAACCCTTTGCGTTT 404
Query 433 TCCCCAAGAACAGTGCAAAAATAATAAAAGCTGGAGTTGAGACTGAGCTGCTTGTTGGAA 492
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 405 TCCCCAAAAACAGTGCAAAAATAATAAAAGCTGGAATCGAGACTGAGCTGCTTGTTGGAA 464
Query 493 TGAAAAATGATGGTCAATCCAATGTAGATATTGTTGCTGTTAAAGGCAGTTTACATCTTC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGAAAAATGATGGTCAATCCAATGTAGATATTGTTGCTGTTAAAGGCAGTTTACATCTTC 524
Query 553 CTTTTGATCAAAATGCTGTTCAGAATCTCACTGCTCTGAGTTTCAGCAACGCGTCTGTGC 612
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 525 CTTTTGATCAAAATGCTGTTCAGAATCTCACTGCTCTGAGTTTCAGCAACGCATCTGTGC 584
Query 613 CAACTTCCGCTCAAGCTACCTTGCCATATGCTTTTGCTGTCAGCAAGTTCCTGCAGGCGG 672
|||| || |||||||||||||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 585 CAACCTCTGCTCAAGCTACCTTCCCATATGTTTTTGTTGTCAGCAAGTTCCTCCAGGCGG 644
Query 673 GTGCTTTTGATTTTGTTGGCACCATCATCTATGAGATAGATGGTAAGCCATACCAAAGCA 732
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTGCTTTTGAATTAGTTGGCACCATCATCTATGAGATAGATGGTAAGCCATACCAAAGCA 704
Query 733 TCTTTTATAATGGAACTATTGAAGTTGTTGAAGATGGTCCTCTCTTCAGAATGGAGTCAG 792
|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 705 CCTTTTACAATGGAACTATCGAAGTTGTTGAAGATGGTCCTCTCTTCAGGATGGAGTCAG 764
Query 793 TCTTCCTTAGTGGTCTTTTAATCTTTGTTATCGCTT-TTCTCGCCATCTATATCCAAAAT 851
|||||||||| || ||||| || |||||||||| || |||| ||||| ||||||||||||
Sbjct 765 TCTTCCTTAGCGGCCTTTTGATTTTTGTTATCG-TTCTTCTAGCCATATATATCCAAAAT 823
Query 852 GTTTTGAAGCATATGACCAAGAAAACAAAGAGAGCACCAAAAGTTGAAGTTGGAACCGCA 911
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 824 GGTTTGAAGCATATGACCAAGAAAGCAAAGAGAGCACCAAAAGTTGAAGTTGGAACCGCA 883
Query 912 ACTAAAGATGCTTCGCATGATGAATGGCTTGAGGGTACTTCGTACACTCAATCTTCGAGT 971
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 884 ACAAAAAATGCTTCGCATGATGAATGGCTTGAGGGTACTTCGTACACTCAATCATCGAGT 943
Query 972 AAGTCAAAGAAGAAGAAGTAGATCTCACACGCTTTGTTAGGGGGCTTGAGATAAGAAACC 1031
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 944 AAGTCAAAGAAGAAGAAGTAGATCTCACACGCTTTGTTAGGGGACTTGAGATAAGAAACC 1003
Query 1032 GAAAACACACGAACGA 1047
||||||| ||||||||
Sbjct 1004 GAAAACATACGAACGA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5