BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16600.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931489 jgi|Araly1|931489|scaffold_303946.1 843 0.0
> Ahg931489 jgi|Araly1|931489|scaffold_303946.1
Length=562
Score = 843 bits (456), Expect = 0.0
Identities = 526/559 (94%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 34 TCAATCTCAGAGaaaaaaaGAAATGGCAACAAACCCTAAAGTCTACTTCGACATGACCGT 93
||||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1 TCAATCTCAGA-AAACAAA-AAATGGCACCAAACCCTAAAGTTTACTTCGACATGGCCGT 58
Query 94 CGGTGG-CAAATCCGCCGGTCGTATCGTGATGGAGCTTTACGCCGACACAACACCAGAAA 152
|||||| | |||| || |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 59 CGGTGGTC-AATCAGCTGGTCGTATCGTGATGGAGCTTTTCGCGGACACAACACCAGAAA 117
Query 153 CCGCCGAGAATTTCAGAGCACTCTGTACCGGAGAGAGAGGAATCGGTAAA-CAAGGTAAG 211
||||||||||||||||||| |||||||||||||||| ||||||||| ||| | ||||||
Sbjct 118 CCGCCGAGAATTTCAGAGCTCTCTGTACCGGAGAGAAAGGAATCGGAAAATC-TGGTAAG 176
Query 212 CCATTACACTACAAAGGATCAAGCTTTCACCGAGTGATTCCGAAATTCATGTGTCAAGGA 271
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 CCATTACACTACAAAGGGTCAAGCTTTCACCGTGTGATTCCGAAATTCATGTGTCAAGGA 236
Query 272 GGTGATTTCACAGCCGGGAATGGTACCGGAGGTGAATCTATCTATGGATC-GAAGTTCAA 330
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 237 GGTGATTTCACCGCCGGGAATGGTACCGGAGGTGAATCTATCTATGGA-CTGAAGTTCAA 295
Query 331 AGACGAGAACTTTATCAAGAAACATACAGGACCAGGTATTTTGTCTATGGCTAACGCTGG 390
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGATGAGAACTTTGTCAAGAAACATACAGGACCAGGTATTTTGTCTATGGCTAACGCTGG 355
Query 391 TGCGAACACGAATGGATCTCAGTTTTTTATTTGTACTGAGAAGACTTCGTGGCTCGATGG 450
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 TGCCAACACTAATGGATCTCAGTTTTTTATTTGTACTGAGAAGACTTCATGGCTCGATGG 415
Query 451 GAAACATGTTGTGTTTGGTCAAGTTGTTGAGGGATTGAATGTTGTTAGAGATATTGAGAA 510
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 416 GAAACATGTTGTGTTTGGTCAAGTTGTTGAAGGATTGAATGTTGTTAGAGATATTGAAAA 475
Query 511 GGTTGGATCTGACTCTGGAAGAACTTCTAAGCCTGTTGTCATTGCTGATTGTGGTCAGAT 570
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 476 GGTTGGATCTGACTCTGGAAGAACTTCTAAGCCTGTTGTTATTGTTGATTGTGGTCAGAT 535
Query 571 TTCTTAGATCTGTCTGAGA 589
||||||||||| |||||||
Sbjct 536 TTCTTAGATCTCTCTGAGA 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5