BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16630.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931491 jgi|Araly1|931491|scaffold_303948.1 915 0.0
> Ahg931491 jgi|Araly1|931491|scaffold_303948.1
Length=1012
Score = 915 bits (495), Expect = 0.0
Identities = 564/596 (95%), Gaps = 10/596 (2%)
Strand=Plus/Plus
Query 28 CTTATAGCTTCTGAGCATCAATGGATCCAAATCATAATAATCTTCTCATCTTTGTAGCCT 87
||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||
Sbjct 1 CTTATAGCTTCTGAGCATCAATGGATCCACATCATAATAATC-T-TC-TCTTTGTAGCCT 57
Query 88 TTTTTGTTCTCTGCTTAGCCACCAA-TGGTGTAACCGGATATGCCACGGTCACAGGCTCG 146
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 58 TTTTTGTTCTCTGCTTAGCC-GCAAGTGGAGTAACCGGATATGCCACGGTCACAGGCTCG 116
Query 147 GTGTTTTGTGACCAATGCAAGGATGGAGAGAGATCTTTGTTTGATTTTCCTGTCTCTGGA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTGTTTTGTGACCAATGCAAGGATGGAGAGAGATCTTTGTTTGATTTTCCTGTCTCTGGA 176
Query 207 ATCAAGATTAGTGTCACATGTGCTGATGAAAATGGACAGGTCTATATGTCAAGAGAAGAG 266
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 177 ATCAAGGTTAGTGTCACATGTTCTGATGAAAATGGAGAGGTCTATATGTCAAGAGAAGAG 236
Query 267 ACTACTAATTGGCTTGGAGGATATGTAATGAGATTTGATGGGACACCGGATCTAAGTAAC 326
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 237 ACTACTAATTGGCTTGGAGGTTATGTAATGAGATTTGATGGTACACCGGATCTGAGTAAC 296
Query 327 TGTTATGCTCAAGTTTCAGACAATGGAGTTCAACAAGACCCAAGTAGCTGCAGCATTGCT 386
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 297 TGTTATGCTCAAGTTTCAGATAATGGAGTTCAACAAGACCCAAGTAGTTGCAGCATTGCT 356
Query 387 TCAGGTCCTGCACAGAAACTTAAACTAATGTTCAGCTTTTTTGGGATTGAAACGTTTGCT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCAGGTCCTGCACAGAAACTTAAACTAATGTTCAGCTTTTTTGGGATTGAAACGTTTGCT 416
Query 447 GCGGATGCCCTTCTTGCTCAACCAGTTCAGCCAA-GTTCTTTTTGTCCTAAACCACCCAC 505
|||||||| ||||||||||| ||| ||||||||| || |||||||||||||||||||| |
Sbjct 417 GCGGATGCGCTTCTTGCTCAGCCACTTCAGCCAATGT-CTTTTTGTCCTAAACCACCCGC 475
Query 506 AGCTCCGGTCATGCCTCCTCCTCAAGTTCCGGTAATGCCTCCTCCTCAGGTCCCGGTTAA 565
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 476 AGCACCGGTCATGCCTCCTCCTCAAGTCCCGGTCATGCCTCCTCCTCAGGTCCCGGTTAA 535
Query 566 GCCTCATCCTAAGGTCCCGGTTATAAGTCCTGATCCTCCAGCTACATTGCCTCCTC 621
||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 536 GCCTCCTCCTAAGGTCCCGGTTATAAGTCCT---CCTCCAGTTACATCACCTCCTC 588
Score = 671 bits (363), Expect = 0.0
Identities = 442/479 (92%), Gaps = 9/479 (2%)
Strand=Plus/Plus
Query 662 GCCTCCTCCTCTGGTCCCGGTCATAAATCTTCCTCCAGTTACATCACCTCCTCAGTTTAA 721
|||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 536 GCCTCCTCCTAAGGTCCCGGTTATAAGTCCTCCTCCAGTTACATCACCTCCTCAGTTTAA 595
Query 722 GCTTCCACCATTGCCTCAAATCCCTCCAATGCCATTTGTAGAGCCATCAGCTTGTTCTCA 781
||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GCTTCCACC--T---T----TCCCTCCAATGCCATTTGTAGAGCCATCAGCTTGTTCTCA 646
Query 782 CCAGTTGTGGATGAAACCTGAGTACAGATGCTACTGGAGGGCGATAGGTCCAGACACAAA 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 647 CCAGTTGTGGATGAAACCTGAGTACAGATGTTACTGGAGGGCGATAGGTCCAGACACGAA 706
Query 842 GGTCGCAGTTGCATTTGGGCTAGTAGCCGGGAGAATATACGGCACAGATATGACAGTACG 901
||| || |||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 707 GGTTGCGGTTGCATTTGGGCTAGTAGCCGGGAGGAGGTACGGCACTGATATGACCGTACG 766
Query 902 AGAAGCGCTTGACGGGCGAGGAGAAGCCTATAAGACACTTCTAAGAGAGGCAACAACTGC 961
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 767 TGAAGCGCTTGACGGGCGAGGAGAAGCCTATAAGACACTCCTAAGAGAGGCAACAACTGC 826
Query 962 ATTGCTCAATTCATACAACTCTCTAGGATTTCCTTATAATTCCGTCGCTGTGATCACATA 1021
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 827 ATTACTCAATTCATACAACTCTCTAGGATTTCCATATAATTCCATCGCTGTGATCACATA 886
Query 1022 TACCAATCTGGCTCTCCTCGGGAATTCGGAACACGATGTCCTCATGACTGCTATTCGTTT 1081
||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 887 TACCAATTTGGCTCTCCTCGGGAATTCGGAACATGATGTTCTCATGACCGCTATTCGTTT 946
Query 1082 CATCAAGGCTAATTCCGGGACCTGCAGATTCACAGTCTGCAATTGATTGAATGTGTTTT 1140
||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 947 CATTAAGGCTAATTCCGGGACCTGCAGATTCACAGTATGTAATTGATTGGTTGTGTTTT 1005
Score = 62.1 bits (33), Expect = 1e-08
Identities = 49/56 (88%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 614 GCCTCCTCCTAAGGTCCCGGTTATAAGTCCTGATCCTCCAACTACATTGCCTCCTC 669
||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 536 GCCTCCTCCTAAGGTCCCGGTTATAAGTCCT---CCTCCAGTTACATCACCTCCTC 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5