BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16650.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931493 jgi|Araly1|931493|scaffold_303950.1 2444 0.0
Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970 1471 0.0
> Ahg931493 jgi|Araly1|931493|scaffold_303950.1
Length=1637
Score = 2444 bits (1323), Expect = 0.0
Identities = 1511/1603 (94%), Gaps = 7/1603 (0%)
Strand=Plus/Plus
Query 147 CTTGTAACTTTGAGGTATACATGGCTGCTTCTGATCAACACCGGTCTCGCCGTCACGACG 206
|||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1 CTTGTAACTTTGAGATTTACATGGCTGCTTCTGATCAACACCGCTCTCGCCACCACGACG 60
Query 207 AGAGCTCTTCAAGACCCAACAAGAAGAAGAAGGTAAGCAGAAACCCAGAAACAAATCTCC 266
| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 61 AAAGCTCTTCAAGACCCAACAAGAAGAAGAAGATAAGCAGAAGCCCTGAAACAAATCTCC 120
Query 267 TCTTCAATCTCAATTCATGCTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCACTTTATG 326
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TCTTCAACCTCAATTCATGTTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCCCTTTATG 180
Query 327 ATGCAGCCATCACTTCCAGTGAAGTACGTCTCAGCCAGCAACATTTTCAAACGCTTCTGT 386
|||||||| |||||||||| ||| |||| |||||||||||||||||||| |||||| |||
Sbjct 181 ATGCAGCCGTCACTTCCAGCGAATTACGCCTCAGCCAGCAACATTTTCAGACGCTTGTGT 240
Query 387 ACCTATGCTCAGCTTCCATTACTGACATATCTCTTCAATA-CCTTGCCATTGACCGTGGT 445
|||||||||| ||||| |||| ||||| |||||||| | |||||||||||||||||||
Sbjct 241 ACCTATGCTCTGCTTCTATTAGTGACACATCTCTTC-GGAGCCTTGCCATTGACCGTGGT 299
Query 446 TTCGAGATTTTTGATCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTTACT 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 TTCGAGATTTTTGATCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTCACT 359
Query 506 TCAGTGGCTAGACTGGCTGCTGCTAAAGGTAATGGTGATTATGCTTTCAAGGTTGTTAAG 565
||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 360 TCAGTGGCTAGGTTGGCTGCTGCTAAGGGTGATGGTGATTATGCTTTCAAGGTTGTTAAG 419
Query 566 GAGTTTGTTTCTGTTGGAGGTGTGTCGATTCCTCGTCTGAGGACATATGCGCCGGCTTTG 625
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 420 GATTTTGTTTCTGTTGGCGGTGTGTCGATTCCCCGTCTGAGGACCTATGCGCCGGCTTTG 479
Query 626 CTCTGTTTCTGCGAGAAG-TTGGAGGCTGAAAAGGGTTATGAGGTAGAAGAGCACATGGA 684
||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CTCTGTTTCTGTGAG-AGATTGGAGGCTGAAAAGGGTTATGAGGTGGAAGAGCACATGGA 538
Query 685 AGCTGCAGGTATTGCATTGGAGGAGGCAGAGATATCGGCTTTGTTGAAGGTAAGTGCTGC 744
||||||||| |||| |||||||||||||||||| | ||||||||||||||| || |||||
Sbjct 539 AGCTGCAGGAATTGAATTGGAGGAGGCAGAGATCTTGGCTTTGTTGAAGGTTAGCGCTGC 598
Query 745 CACGGGTCGAGAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTG 804
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CACGGGCCGAGAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTG 658
Query 805 CGTTAGTGAAGAAACTTTGAAAATTATTGAGGAATGGTTCTGTGGAGAAAAAGCTGGTGA 864
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 659 CGTTTGTGAAGAAACTTTGAAAATAATTGAAGAATGGTTCTGTGGAGAGAAAGCTGGTGA 718
Query 865 GGTTGGTGATAATGGAATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAATAA 924
| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 GCTTAGTGGTAATGGAATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAAGAA 778
Query 925 TGGAGGTGGGTGGCACGGGCATGGGTGGGTTGGGGAGGGTAAATGGACTGTAAAGAAAGG 984
||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 779 TGGAGGTGGGTGGCACGGGCATGGGTGGGTTGGTGAGGGCAAATGGATTGTTAAGAAAGG 838
Query 985 TAATGTTAGCTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATAC 1044
||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TAATGTTAGCTCAACCGGAAAATGTTTGAGCTGCAGTGAGCAGTTGGCTTGTGTAGATAC 898
Query 1045 CAATGAGGTAGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGATAGGAA 1104
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 CAATGAGGTGGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGAGAGGAA 958
Query 1105 GACAAAGATGAATTCATGTGAGACAAATGTGGTCTTCAGCGAGTTTCAGGACTGGCTTGA 1164
| |||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||
Sbjct 959 GGCAAAGATGAATTCATGCGAGACGCAGGTGGTCTTCAGCGAGTTCCAGGACTGGCTTGA 1018
Query 1165 GAAACATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAA 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAAACATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAA 1078
Query 1225 TTTTGTAGATGGCAGTTTCAGTCTTTCACAGC---TTGAATCTGTGATGAAGGAACTTTA 1281
||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 1079 TTTTGTAGATGGCGGTTTCAGTCTTCCACAGCAGCTTGAATCTGTGGTGAAGGAACTTTA 1138
Query 1282 CCGTGAAAGTGGTAATAACAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAAGAC 1341
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1139 CCGTGAAAGTGGTAATAATAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAGGGC 1198
Query 1342 GCTTTTAGAAAACCCAACTCACCGGAATCTGGTTGAAGAATGGATTAGTAACGGTGTCCT 1401
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCTTTTAGAAAACCCAACCCACCGGAATCTGGTTGAAGAATGGATTAGTAACGGTGTCCT 1258
Query 1402 GTATGCAACTCCACCAGGTTCCAATGATGATTGGTATTGGCTGTATGCTGCTGCTAAGCT 1461
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 GTATGCAACTCCACCAGGATCCAATGATGATTGGTATTGGCTATATGCTGCTGCTAAGCT 1318
Query 1462 CAAGTGTTTGCTTGTGACAAATGATGAGATGAGAGACCACATTTTTGAACTCTTAGGGAG 1521
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1319 CAAGTGTTTGCTTGTGACAAATGATGAGATGAGGGATCACATTTTTGAACTTTTAGGGAG 1378
Query 1522 TACTTTTTTCCAAAAGTGGAAAGAAAGACATCAGGTCCGGTATACTTTTGTGAAAGGTAA 1581
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1379 CAGTTTTTTCCAAAAGTGGAAAGAAAGGCATCAGGTCCGGTATACTTTTGTGAAAGGTAA 1438
Query 1582 CCTGAAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCAGAGAAAGGGTC 1641
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 TCTGAAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCCGAGAAAGGGTC 1498
Query 1642 ATGGCATTTCCCGGTCTCATGCGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTAT 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATGGCATTTCCCGGTCTCATGCGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTAT 1558
Query 1702 TAGCAGACAAAGTATTTTAGATTCACCTAAGAGTAATGGGAAG 1744
||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1559 TAGCAGACAAAGTGTTTTAGATTCACCTAAAAGTAATGGAAAG 1601
> Ahg889984 jgi|Araly1|889984|Al_scaffold_0007_1970
Length=1554
Score = 1471 bits (796), Expect = 0.0
Identities = 1314/1561 (84%), Gaps = 48/1561 (3%)
Strand=Plus/Plus
Query 167 ATGGCTGCTTCTGATCAACACCGGTCTCGCCGTCACGACGAGAGCTCTTCAAGACCCAAC 226
||||| | | ||||||| | ||| ||||||| || ||||| ||| |||||| ||| |||
Sbjct 1 ATGGCCGGTACTGATCACCGCCGCTCTCGCCACCATGACGAAAGCCCTTCAAAACCTAAC 60
Query 227 AAGAAGAAGAAGGTAAGCAGAAACCCAGAAACA-AATCTCCTCT-TCAATC-TCAATTCA 283
|||||| |||||| |||| | || ||||||| | | |||||| | |||||| || ||||
Sbjct 61 AAGAAGCAGAAGGGAAGCCGCAATCCAGAAA-AGAGTCTCCT-TATCAATCTTC-ATTCT 117
Query 284 TGCTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCACTTTATGATGCAGCCATCACTTCC 343
|| |||||| ||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct 118 TGTTCCAAGAGAAAGGACCTCTCAGCTGCGTTGGCTCTTTATGATGCAGCTATCACTTCC 177
Query 344 AGTGA-AGTACGTCTCAGCCAGCAACATTTTCAAACGCTTCTGTACCTATGCTCAGC-TT 401
||||| | | || |||| ||||||||| || ||| | ||||| || || ||||| || ||
Sbjct 178 AGTGACA-TCCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTATCTCTGCTCCGCGTT 236
Query 402 CCATTACTGACATATCTCTTCAATAC-CTTGCCATTGACCGTGG-TTTCGAGATTTTTGA 459
||||| |||| |||||||||| || |||||||||||||| || |||| | ||||||||
Sbjct 237 -CATTAGTGACCCATCTCTTCAA-ACACTTGCCATTGACCGGGGTTTTC-AAATTTTTGA 293
Query 460 TCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTTACTTCAGTGGCTA-GAC 518
|||||||||||||| ||||||||||| ||||| |||| || ||| ||||||| | |||
Sbjct 294 CCGTATGGTTAGTTCAGGGATAAGTCCCAATGAATCATCCGTCACTGCAGTGGC-ACGAC 352
Query 519 TGGCTGCTGCTAAAGGTAATGGTGATTATGCTTTCAAGGTTGTTAAGGAGT-TTGTTTC- 576
| |||||||| || ||| | |||||||||||||||||| |||| || || | ||| ||
Sbjct 353 TAGCTGCTGCCAAGGGTGACGGTGATTATGCTTTCAAGCTTGTCAAAGA-TATTG--TCG 409
Query 577 T-GTTGGAGGTGTGTCGATTCCTCGTCTGAGGACATATGCGCCGGCTTTGCTCTGTTTCT 635
| ||||| ||||| ||| | ||||||||||| || ||||| |||||||||||||||||||
Sbjct 410 TGGTTGGCGGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCT 469
Query 636 GCGAGAAG-TTGGAGGCTGAAAAGGGTTATGAGGTAGAAGAGCACATGGAAGCTGCAGGT 694
| ||| || ||||||||||| ||||||||||| || |||||||||||||| ||| |||||
Sbjct 470 GTGAG-AGTTTGGAGGCTGAGAAGGGTTATGAAGTGGAAGAGCACATGGATGCTTCAGGT 528
Query 695 ATTGCATTGGAGGAGGCAGAGATATCGGCTTTGTTGAAGGTAAGTGCTGCCACGGGTCGA 754
||| ||||||||||||||||| || |||||| |||||||||| ||||||||||| |||
Sbjct 529 ATTATGTTGGAGGAGGCAGAGATCTCTGCTTTGCTGAAGGTAAGCGCTGCCACGGGCCGA 588
Query 755 GAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTAGTGAA 814
||||||||||||||||||||||| ||||| || || |||| |||||||||||||||||||
Sbjct 589 GAAAACAAGGTTTATAGATATTTGCATAAATTAAGAGAATGTGTTGGCTGCGTTAGTGAA 648
Query 815 GAAACTTTGAAAATTATTGAGGAATGGTTCTGTGGAGAAAAAGCTGGTGAGGTTGGTGAT 874
||||||| |||| || ||||||||||| | ||||| |||||| | || ||| |||||
Sbjct 649 GAAACTTCAAAAACAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGAT 708
Query 875 AATGG-AATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAATAATGGAGGTGG 933
|| || |||||||||||| ||| | ||||||||| |||||||||||| ||||| |||||
Sbjct 709 AA-GGCGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAGAATGGGGGTGG 767
Query 934 GTGGCACGGGCATGGGTGGGTTGGGGAGGGTAAATGGACTGTAAAGAAAGGTAATGTTAG 993
||||||||| | ||| ||||||||||| || ||||||| ||| |||||||||||||||||
Sbjct 768 GTGGCACGGTCTTGGTTGGGTTGGGGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAG 827
Query 994 CTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATACCAATGAGGT 1053
| || | |||| |||||||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 828 CCCAGCCGGAAAATGTTTGAGCTGTGGTGAGCATTTGGCTTGTGTTGATACCAATGAGGT 887
Query 1054 AGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGATAGGAAGACAAAGAT 1113
||| || | || |||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 888 AGAGACTGAAAATTTTGTGAATTCTTTGGTGGCTTTGGCTATGGAGAGGAAGGCGAAGAT 947
Query 1114 GAATTCATGTGAGACAAAT-GTGG-TCTTCAGCGAGTTTCAGGACTGGCTTGAGAAA-CA 1170
||||||||| ||| | || | || | ||||||||||||||||| |||||||| ||| ||
Sbjct 948 GAATTCATGCGAG-CCTATGGCGGAT-TTCAGCGAGTTTCAGGAGTGGCTTGA-AAAGCA 1004
Query 1171 TGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGT 1230
|||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1005 TGGAGACTACGAAGCTATACTAGATGGAGCAAATATTGGGCTTTACCAACAAAATTTTAC 1064
Query 1231 AGATGGCAGTTTCAGTCTTTCACAGCTTGAATCTGTGA-TGAAGGAACTTTACCGTGAAA 1289
|||||| | |||||||| ||||||||||| |||| | |||||||||||||| | |||
Sbjct 1065 AGATGGTGGCTTCAGTCTACCACAGCTTGAAGCTGT-AGTGAAGGAACTTTACAATAAAA 1123
Query 1290 GTGGTAATAACAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAA-GACGCTTTTA 1348
||||||| || ||| ||| |||||||| |||||||||| ||||||||| | | ||||||
Sbjct 1124 GTGGTAACAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATG-CACTTTTA 1182
Query 1349 GAAAACCC-AACTCACCGGAATCTGGTTGAAGAATGGATTAG-TAACGGTGTCCTGTATG 1406
| |||||| || ||||||||||||||| || ||||||||| | |||| |||||| || |
Sbjct 1183 GGAAACCCGAA-TCACCGGAATCTGGTGGAGGAATGGATT-GATAACAATGTCCTTTACG 1240
Query 1407 CAACTCCACCAGGTTCCAATGATGATTGGTATTGGCTGTATGCTGCTGCTAAGCTCAAGT 1466
| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1241 CGACCCCACCAGGTTCCAACGATGATTGGTATTGGCTGTATGCTGCTGCTAAACTCAAGT 1300
Query 1467 GTTTGCTTGTGACAAATGATGAGATGAGAGACCACATTTTTGAACTCTTAGGGAGTACTT 1526
||||||||||||| ||||||||||||||||| |||||||||||||| ||| | | || ||
Sbjct 1301 GTTTGCTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAATAGTT 1360
Query 1527 TTTTCCAAAAGTGGAAAGAAAGACATCAGGTCCGGTATACTTTTGTGAAAGG-TAACCTG 1585
|||||||||| ||||||||||||||||| || |||| ||| ||||||||||| | | |
Sbjct 1361 TTTTCCAAAAATGGAAAGAAAGACATCAAGTGCGGTTTACCTTTGTGAAAGGCTGTC-TC 1419
Query 1586 AAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCAGAGAAAGGGTCATGG 1645
|||||||||||||| |||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1420 AAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCAGAGAAAGGATCATGG 1479
Query 1646 CAT-TTCCCGGTCTC-A-TGCGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTATT 1702
|| |||| || | | | | || ||||||| || |||||||||| ||||||||| |||
Sbjct 1480 CACATTCCAA-TCACGAGT-C-AAGACAATGAGGAATCTTCAAGAAGTTGGATGTGCATT 1536
Query 1703 A 1703
|
Sbjct 1537 A 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5