BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16660.1
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931495 jgi|Araly1|931495|scaffold_303952.1 2623 0.0
Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1 616 3e-175
> Ahg931495 jgi|Araly1|931495|scaffold_303952.1
Length=1678
Score = 2623 bits (1420), Expect = 0.0
Identities = 1597/1683 (95%), Gaps = 9/1683 (1%)
Strand=Plus/Plus
Query 13 TTTCTCATCTTCTTTCTACAAATGGGTTTCCAAAGATCTATCTCTTCTTCTTCTGCATTA 72
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTCTTCTT-TTTCTACAAATGGGTTTCCAAAGATCTATCTCTTCTTCTTCTGCATTG 59
Query 73 AAATGGCTTGGATTTGTAACAGCGGTTTGGGTTCAATCCATCTCCGGCAACAACTACACT 132
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 60 AAATGGCTTGGATTTGTAACGGCTGTTTGGGTTCAAGCCATCTCCGGCAACAACTACACT 119
Query 133 TTTTCAAACTACTCCGGTGCTCTTAAGTCTCTCATGAATCTCAACCAGCTCGAGCTCAAC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTTCAAACTACTCCGGTGCTCTTAAGTCTCTCATGAATCTCAACCAGCTCGAGCTCAAC 179
Query 193 AACCTCTCTGTCGCTAAAGACGTCGGAAAAGCCTTTGGGATCCTGGCTGGCCTTGCCTCT 252
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 180 AACCTCTCTGTCGCTAAAGACGTTGGAAAAGCCTTTGGGATCCTCGCTGGCCTTGCCTCT 239
Query 253 GACCGTCTTCCCACTCCGGTCATCCTCCTTATTGGTTGCTTTGAAGGTCTTCTTGGTTAT 312
||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 240 GACCGTCTTCCTACTCCTGTCATCCTTCTTATTGGTTGTTTTGAAGGACTTCTCGGTTAT 299
Query 313 GGTGTACAATGGCTCGTTGTTAGCCGCACCATCCAACCAATCCCTTATTGGCAGATGTGT 372
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTGTACAATGGCTTGTTGTTAGCCGCACCATCCAACCAATCCCTTATTGGCAGATGTGT 359
Query 373 ATATTCCTCTGTATGGGAGGGAACAGCACAACGTGGATGAACACGGCGGTTCTAGTGACT 432
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 ATATTCCTCTGTATGGGAGGGAACAGCACAACGTGGATGAACACGGCGGTTTTAGTGACT 419
Query 433 TGCATACGCAATTTTCGACGAAACCGTGGTCCGGTCTCCGGGATATTGAAAGGATATGTC 492
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 420 TGCATACGCAATTTCCGACGAAACCGTGGTCCTGTCTCCGGGATCTTGAAAGGATATGTC 479
Query 493 GGTTTAAGCACAGCTATATTCACTGATCTCTGTACTGCTCTGTTCTCAAACGATCCGGCG 552
|| ||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 480 GGCCTAAGCACAGCTATATTCACCGACCTATGCACTGCTCTGTTCTCAAACGATCCGGCG 539
Query 553 TCGTTTTTGGTTTTACTAGCCGTGGTGCCTTTTGCCGTATGTCTCACGGCGGTTTTCTTC 612
|||||||||||||| || || || | ||||| || || |||||||||||||||||||||
Sbjct 540 TCGTTTTTGGTTTTGCTCGCAGTCATCCCTTTCGCGGTCTGTCTCACGGCGGTTTTCTTC 599
Query 613 CTCCGTGAGATCCCACCAGCATCTTCCGCAGCTGAGGAGAACGAAGAGACTCGTTACTTT 672
||||||||||||||||| || ||||| || || |||||||||||||||||||| ||||||
Sbjct 600 CTCCGTGAGATCCCACCTGCTTCTTCTGCCGCCGAGGAGAACGAAGAGACTCGCTACTTT 659
Query 673 ACCATATTCAACATTGTGGCCGTTGTTGTCGCCGTGTATCTTCAGTCTTACGACATCATT 732
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ACTATATTCAACATTGTGGCCGTCGTTGTCGCCGTGTATCTTCAGTCTTACGACATCATC 719
Query 733 GGAATCAAAACTGGAGTGTTCTCTGTCGCTTTCGCTTCTATACTTCTCTTCCTCTTGGCT 792
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 720 GGAATCAAAACTGGAGTGTTCTCTGTTGCTTTCGCCTCCATACTTCTCTTCCTCTTGGCT 779
Query 793 TCTCCAATAGCCATTCCTTTCCACTCCTTCATCAAGAGCTTGAACT-ACGGTGAACAAGA 851
|||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 780 TCTCCAATCGCCATTCCTTTCCACTCTTTCATCAAGAGCTTGAA-TCACGGTGAACAAGA 838
Query 852 TGACTTAGAAGGACGGATTCAAGAACCGTTGCTTAGATCCGAGATAGCGGCAGCGGAGAA 911
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TGACTTAGAAGAACGGATTCAAGAACCGTTGCTTAGATCCGAGATCGCGGCAGCGGAGAG 898
Query 912 AGAAGTAATAGTTGTAGCTGCGGTGGCAGCGGAAGAGGAGGAGAAGAAGAGGAAGAAACC 971
|||||| | |||||||||||||||||||| ||| | || || |||||| |||||||||
Sbjct 899 AGAAGTGGTCGTTGTAGCTGCGGTGGCAGCTGAACA--AGAAG-AGAAGAAGAAGAAACC 955
Query 972 GGTTTTGGGAGAAGACCACACTATAATGGAAGCAGTGTTGACCGTTGACTTTTGGGTGCT 1031
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 GGTGTTGGGAGAAGACCACACTATAATGGAAGCAGTTTTGACCGTTGACTTTTGGGTGCT 1015
Query 1032 TTTTGTGTCCTTCTTGTGTGGTGTAGGAACTGGTTTAGCTGTGATGAACAATATGGGTCA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTTTGTGTCCTTCTTGTGTGGTGTAGGAACTGGTTTAGCTGTGATGAACAATATGGGTCA 1075
Query 1092 GATAGGTCTTGCCCTTGGATACACAAATGTCTCAATCTTTGTCTCCATGACTAGTATTTG 1151
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 GATAGGTCTTGCCCTTGGATACACAAATGTTTCAATCTTTGTCTCCATGACTAGTATTTG 1135
Query 1152 GGGATTCTTCGGTCGCATTCTCTCCGGTACTCTCTCCGAATACTTTCTCAAGAAAGCTGG 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGGATTCTTCGGTCGCATTCTCTCCGGTACTCTCTCCGAATACTTTCTCAAGAAAGCTGG 1195
Query 1212 AACACCAAGACCACTATGGAATGCAGCCTCTCAAATCCTTATGGCCGTAGGATATATACT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AACACCAAGACCACTATGGAATGCAGCCTCTCAAATCCTTATGGCCGTAGGATATATACT 1255
Query 1272 AATGGCTTTAGCCGTGCCTAATTCACTCTACATCGGTTCAATGGTGGTTGGAGTATGTTA 1331
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1256 AATGGCTTTAGCCGTGCCTAATTCACTCTACATTGGTTCAATGGTGGTTGGAGTTTGTTA 1315
Query 1332 CGGTGTCCGTCTAGCCATAACTGTACCAACAGCTTCCGAACTCTTTGGTCTCAAATACTA 1391
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1316 CGGTGTCCGTCTAGCCATAACCGTACCAACAGCATCTGAACTCTTTGGTCTCAAATACTA 1375
Query 1392 CGGTCTCATCTACAACATCTTAGTACTTAACTTGCCACTTGGCTCGTTTCTCTTCTCGGG 1451
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1376 CGGTCTCATCTACAACATTTTAGTACTTAACTTGCCACTTGGCTCGTTCCTCTTCTCGGG 1435
Query 1452 TCTCCTCGCTGGCTTCCTCTACGATGCAGAGGCAACACCAACTCCTGGTGGGGGCAACAC 1511
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1436 TCTCCTCGCTGGCTTCCTCTATGATGCAGAGGCTACACCAACTCCTGGTGGGGGCAACAC 1495
Query 1512 GTGCGTAGGAGCTCATTGCTACCGTCTCATCTTCATAGTCATGGCATTAGCTTCTGTTAT 1571
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1496 GTGCGTAGGAGCTCATTGTTACCGTCTCATTTTCATAGTCATGGCATTAGCTTCTGTTAT 1555
Query 1572 CGGAGTCGGTTTGGATCTTGTGTTGGCTTATAGGACTAAGGAGATTTACGCTAAGATTCA 1631
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 TGGAGTCGGTTTGGATCTTGTGTTGGCTTATAGGACGAAGGAGATTTACGCTAAGATTCA 1615
Query 1632 CGCTAGCAAGAAGTCA-AAGAAATCTGGTGGTAGCCTTAGTTAAGACACTGTATATCTAG 1690
||||||||||||||| || |||||||||||||||||||||||||| | | || ||||||
Sbjct 1616 CGCTAGCAAGAAGTCCCAA-AAATCTGGTGGTAGCCTTAGTTAAGA-ATTATAGATCTAG 1673
Query 1691 TTC 1693
|||
Sbjct 1674 TTC 1676
> Ahg491162 jgi|Araly1|491162|fgenesh2_kg.7__595__AT4G34950.1
Length=1914
Score = 616 bits (333), Expect = 3e-175
Identities = 687/854 (80%), Gaps = 39/854 (5%)
Strand=Plus/Plus
Query 55 TCTTCTTCTTCTGCAT-TAAAATGGCTTGGATTT-GTAACAGCGGTTTGGGTTCAATCCA 112
|||||||| || || | |||||||||| || ||| || || || |||||||| |||||||
Sbjct 75 TCTTCTTCCTCAGC-TCTAAAATGGCTAGG-TTTCGTTACTGCCGTTTGGGTCCAATCCA 132
Query 113 TCTCCGGCAACAACTACACTTTTTCAAACTACTCCGGTGCTCTTAAGTCTCTCATGAATC 172
||||||||||||| ||||| || ||||| |||||||| || || || || || ||||| |
Sbjct 133 TCTCCGGCAACAATTACACCTTCTCAAATTACTCCGGCGCACTCAAATCCCTAATGAACC 192
Query 173 TCAAC-CAGCTCGAGCTCAACAACCTCTCTGTCGCTAAAGACGTCGGAAAAGCCTTTGGG 231
|| || ||||| || ||||||| || || |||||||||||| |||||||||| || ||
Sbjct 193 TC-ACTCAGCTAGAACTCAACAGTCTTTCCGTCGCTAAAGACATCGGAAAAGCATTCGGA 251
Query 232 ATCCTGGCTGGCCTTGCCTCTGACCGTCTTCCCACTCCGGTCATCCTCCTTATTGGTTGC 291
||||| || || ||||| || || |||||| | |||||||| ||||| || || |||||
Sbjct 252 ATCCTTGCCGGGCTTGCTTCCGATCGTCTTTCAACTCCGGTGATCCTTCTCATCGGTTG- 310
Query 292 TTT-GAAGGTCTTCTTGGTTATGGTGTACAATGGCTCGTTGTTAGCCGCACCATCCAACC 350
||| ||||||||||| |||||||||||||||||||| || || |||||||| || |||||
Sbjct 311 TTTCGAAGGTCTTCTCGGTTATGGTGTACAATGGCTTGTCGTAAGCCGCACGATTCAACC 370
Query 351 AATCCCTTATTGGCAGATGTGTATATTCCTCTGTATGGGAGGGAACAGCACAACGTGGAT 410
|| |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||
Sbjct 371 TATACCTTATTGGCAGATGTGTGTGTTTCTCTGTATGGGAGGTAACAGTACTACGTGGAT 430
Query 411 GAACACGGCGGTTCTAGTGACTTGCATACGCAATTTTCGACGAAACCGTGGTCCGGTCTC 470
||||||||||||||| ||||| || ||||| || || || ||||| |||||||| || ||
Sbjct 431 GAACACGGCGGTTCTGGTGACGTGTATACGAAACTTCCGGCGAAATCGTGGTCCTGTTTC 490
Query 471 CGGGA-TATTGAAAGGATATGTCGGTTTAAGCACAGCTATATTCACTGATCTCTGTACTG 529
|||| | || |||||||| || |||||||| || || || ||||| |||||||| ||||
Sbjct 491 AGGGATTCTT-AAAGGATACGTTGGTTTAAGTACTGCGATTTTCACGGATCTCTGCACTG 549
Query 530 CTCTGTTCTCAAAC-GATCCGGCGTCGTTT-TTGGTT-TTACTAGCCGTGGTGCCTTTTG 586
||||||| || | || || || |||||| || || || || |||| |||||||| |
Sbjct 550 CTCTGTTTTC-CTCTGACCCAGCTTCGTTTCTT-ATTCTT-CTCTCCGTCGTGCCTTTCG 606
Query 587 CCGTATGTCTCACGGCGGTTTTCTTCCTCCGTGAGATCCCACCAG-C-A-T-CTTCCGCA 642
| || ||||||||||||||||||||||||||||| ||||| || | | | | | |||| |
Sbjct 607 CTGTTTGTCTCACGGCGGTTTTCTTCCTCCGTGAAATCCCTCC-GTCTACTACCTCCG-A 664
Query 643 GCTGAGGAGAACGAAGAGACTCGTTACTTTACCATATTCAACATTGTGGCCGTTGTTGTC 702
| ||||| ||||||||| || ||||| || | || ||||| || || ||||||||
Sbjct 665 -C-GAGGATAACGAAGAGTCTAAATACTTCGCCGTGTTTAACATCGTTGCGGTTGTTGTT 722
Query 703 GCCGTGTATCTTCAGTCTTACGACATCATTGGAATCAAAACTGGAG-TGTTCTCTGTCGC 761
|| ||||| |||||||||||||||||||| ||||||||||| |||| | |||||| ||||
Sbjct 723 GCTGTGTACCTTCAGTCTTACGACATCATCGGAATCAAAACCGGAGCT-TTCTCTATCGC 781
Query 762 TTTCGCTTCTATACTTCTC-TTCCTCTTGGCTTCTCCAATAGCCATTCCTTTCCACT-CC 819
|||||||| ||||||||| ||| |||| |||||||| || || | || ||||| | ||
Sbjct 782 GTTCGCTTCCATACTTCTCATTC-TCTTAGCTTCTCCTATCGCTGTCCCATTCCA-TGCC 839
Query 820 TTCAT-CAAGAGCTT-GAACTACGGTGAACAAGATGACTTAGAAGGACGGATTCAA-GAA 876
||||| | |||| || | ||| |||||| | ||| |||||||||| || | | |||
Sbjct 840 TTCATTCG-GAGCAAAGATC-ACGATGAACA-G--GACGTAGAAGGACGAAT-CGACGAA 893
Query 877 CCGTTGCTTAGATC 890
||||| || |||||
Sbjct 894 CCGTTACTGAGATC 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5