BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16700.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480552 jgi|Araly1|480552|fgenesh2_kg.3__3253__AT2G16700.1 1037 0.0
> Ahg480552 jgi|Araly1|480552|fgenesh2_kg.3__3253__AT2G16700.1
Length=735
Score = 1037 bits (561), Expect = 0.0
Identities = 697/758 (92%), Gaps = 27/758 (4%)
Strand=Plus/Plus
Query 1 GTCTTACCATTTGAACAG-A-AAAAAGCTCTCCACGCCTaaaaaaaaagaaaaaagagac 58
|||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||||
Sbjct 1 GTCTTACCATTTGAACAGAACAAAAAGCTCTCCACGCCT--AAAAAAAG-AGAAAGAGAC 57
Query 59 agaagaagaaaaagataaagaagaaTCAAACTTTGTAACCCTTTAGCAGCAATGGCGATG 118
|| ||| ||| ||| ||||||||||| || ||| |||||||| |||||||||||
Sbjct 58 --AA-AAG---AAG--AAA-AAGAATCAAAC-TT-TAA-TCTTTAGCAACAATGGCGATG 105
Query 119 GCTTTCAAGATGGCGACGACGGGGATGCGTGTGACGGATGAGTGTACGAGTTCATTCATG 178
||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 106 GCTTTCAAGATGGCGACGACGGGTATGCGTGTGACGGATGAGTGTACGAGCTCATACATG 165
Query 179 GACATGAAATGGAAGAAAGTTCATAGATACATCGTTTTCAAGATCGAAGAGAAGTCACGT 238
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 166 GAGATGAAATGGAAGAAAATTCATAGATACATCATTTTCAAGATCGAAGAGAAGTCACGT 225
Query 239 AAAGTCACCGTCGATAAAGTCGGCGGCGCCGGTGAAAGCTACCACGATCTCGAAGATTCT 298
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 226 AAAGTCACCGTCGATAAAGTCGGCGGCGCCGGTGAAAGCTACCACGATCTTGCTGCTTCT 285
Query 299 TTACCGGTGGATGATTGTCGCTACGCTGTCTTTGATTTCGACTTTGTCACCGTCGATAAC 358
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 286 TTACCGGTGGATGACTGTCGTTACGCTGTCTTTGATTTCGACTTCGTCACCGTCGATAAC 345
Query 359 TGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCGGAGGCATCAAAGATAAGGGCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCGGAGGCATCAAAGATAAGGGCA 405
Query 419 AAGATATTGTACGCAACGTCGAAAGATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 AAGATATTGTACGCAACGTCGAAAGATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTAT 465
Query 479 GAACTTCAAGCTACTGATCCGACGGAGATGGGTTTCGATATTATCCAAGACCGTGCCAAA 538
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GAGCTTCAAGCCACTGATCCGACGGAGATGGGTTTCGATATTATCCAAGACCGTGCCAAA 525
Query 539 TAGATTGATCACTTAAGAGAATATGATTTGACTCACTTTGTCAATAATTAACATTAATTA 598
|| ||| || | | |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 526 TAAATTTATTAATCAAGAAAATATGATTTGACTCACTTTGTCAATAATTAACGTTAATTA 585
Query 599 GGTCATCGGTTAATGTTTAATTATTGCTGGTTAGTGCTTACTCTTTTTTGAGTTTATTAT 658
||| || | |||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 586 GGTTATTGATTAATGTTTAATTATTGCTGGTTAGTGCTTAC-CTTTTT-GAGTTT-TT-- 640
Query 659 CCTTGATCAGTCTTACCGGCACTATCCTTTAATTATGACGTTTGTGT-TTTGATTGTGTT 717
|||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 641 CCTT---CAGTCTCACCAGCACTATCCTTTAATTATGACGTTTGTGTGTTTGATTGTGTT 697
Query 718 GTTAAA-ATAtttttttGTCGGTTAAGCAAACATAAAA 754
||| |||| ||||||||||||||||||||||||||
Sbjct 698 GTTGTTTATATATTTTTGTCGGTTAAGCAAACATAAAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5