BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16710.3
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480553 jgi|Araly1|480553|fgenesh2_kg.3__3254__AT2G16710.1 784 0.0
> Ahg480553 jgi|Araly1|480553|fgenesh2_kg.3__3254__AT2G16710.1
Length=673
Score = 784 bits (424), Expect = 0.0
Identities = 603/680 (89%), Gaps = 49/680 (7%)
Strand=Plus/Plus
Query 149 TCGATGAAAGCTTCTCAAATTTTGGCGGCTGCAGCGGCGAGGGTTGGACCGGCGTTAAGG 208
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 43 TCGATGAAAGCTTCTCAAGTTTTGGCGGCTGCGGCGGCGAGGGTTGGACCGGCGTTAAGG 102
Query 209 AAGCAAGTATTAACCTTAACGGACGAAGCTGCTTCTAGGGTTCATCATCTCTTGCAACAG 268
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 103 AAGCAAGTATTAACCTTGACGGACGAAGCTGCCTCTAGGGTTCATCATCTCTTACAACAG 162
Query 269 CGTCAAAAACCTTTTCTCCGATTAGGCGTTAAGGCTCGTGGCTGCAACGGCTTGTCGTAC 328
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 163 CGTCAAAAACCTTTCCTCCGATTAGGCGTTAAAGCTCGTGGCTGCAACGGCTTGTCGTAC 222
Query 329 ACTCTCAATTACGCCGGTAAAACTTCTGGGAACGATGAGAAAGGTAAATTTGACGAGTTG 388
||||||||||| | | | |||||||||||| |||||||| ||| ||
Sbjct 223 ACTCTCAATTA---C-G--------C------CGATGAGAAAGGGAAATTTGATGAGCTG 264
Query 389 GTAGAAGAGAAAGGTGTGAGGATCCTTGTTGAACCAAAGGCCTTAATGCATGTGATTGGA 448
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 265 GTTGAGGAGAAAGGTGTGAGGATACTTGTTGAACCAAAGGCCTTAATGCATGTGATTGGA 324
Query 449 ACAAAGATGGATTTTGTAGATGATAAACTCAGATCAGAGTTTGTGTTTATCAATCCTAAC 508
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 325 ACCAAGATGGATTTTGTAGATGATAAACTCAGATCAGAGTTTGTGTTCATCAATCCTAAC 384
Query 509 TCACAAGGACAATGCGGGTGTGGTGAATCGTTTATGACAACATCTACCTCTAGTGCTAAG 568
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 385 TCACAAGGACAATGCGGGTGTGGTGAATCGTTTATGACAACATCTACTTCTAGTGCTAAG 444
Query 569 CAGAGTGCTAGTTAACACACAGTGATGCGTTTACATTTGTGATTACACTCATATATTATA 628
|| ||||||||||||||||||||||||||||| ||||||| | | | |
Sbjct 445 CATAGTGCTAGTTAACACACAGTGATGCGTTTGCATTTGT--T-A---T-A--------- 488
Query 629 CTGTTACTGGAATTGGCGTTAATGAGAAACAAATACTTTTTAATAAGAATTGAGTTTTAT 688
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 489 CTGTTACTGGAATTGGCGTCAATGAGAAACAAAGGCTTTGCAATAAGAATTGAGTTTTAT 548
Query 689 GTTTGTGCGCTACTTTCAGGCATTAGATTGGTCACTTTATTGCATATACACATTAGAAGC 748
|||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 549 GTTTGTGCGCAACTTT-AGGCATTAGATTGGTCACTTTATTGCATATAC---T--G---- 598
Query 749 TCATGTTGTTGCTTAGAGATATTTCTGAAGCTATGTATTTAGTGGAACGGATAATCTTGA 808
| ||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 599 T--TGTTG---CTTAGAGATATTTCTAAAGCTATGTATTTAGTGGAACGGGTAATTTTGA 653
Query 809 GATTAATTAATGTATTCCTT 828
||| ||||||||||||||||
Sbjct 654 GATCAATTAATGTATTCCTT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5