BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16720.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931500 jgi|Araly1|931500|scaffold_303957.1 1345 0.0
Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 292 2e-78
Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 246 2e-64
Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1 132 6e-30
Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1 130 2e-29
Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 100 2e-20
Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 65.8 6e-10
> Ahg931500 jgi|Araly1|931500|scaffold_303957.1
Length=860
Score = 1345 bits (728), Expect = 0.0
Identities = 807/846 (95%), Gaps = 2/846 (0%)
Strand=Plus/Plus
Query 4 CATCATCATCATCAGAAGAAGAGAGTC-ATGGGAAGATCTCCTTGCTGCGAGAAAGAACA 62
||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 4 CATCATCATCAGAAGAAGAAGAGAG-CTATGGGAAGATCTCCTTGCTGCGAGAAAGAACA 62
Query 63 CATGAACAAAGGTGCTTGGACTAAAGAAGAAGATGAGAGACTAGTCTCTTACATCAAGTC 122
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 63 CATGAACAAAGGTGCTTGGACTAAAGAAGAAGACGAGAGACTCGTCTCTTATATCAAGTC 122
Query 123 TCACGGTGAAGGTTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTTCGCTGCGGTAA 182
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 123 TCACGGTGAAGGTTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTCCGTTGCGGTAA 182
Query 183 AAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTAC 242
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AAGCTGTCGTCTCCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTAC 242
Query 243 ACATGATGAAGATGAACTTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTT 302
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 243 ACATGATGAAGATGAACTTATCATCAAGCTTCATAGCCTCCTTGGCAACAAGTGGTCTTT 302
Query 303 GATTGCGGCGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACA 362
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 303 AATTGCGGCGAGATTACCTGGAAGAACAGATAATGAGATCAAGAATTACTGGAATACACA 362
Query 363 TATAAAGAGGAAGCTTTTGAGCAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGA 422
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 363 TATAAAGAGGAAGCTTTTGAGCAAAGGGATTGATCCAGCCACGCATAGAGCGATCAACGA 422
Query 423 GGCAAAAATTTCTGATTTGAAGAAAACAAAGGACCAAATTGTAAAAGATGTTTCTTTTGT 482
||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 423 GGCGAAAATTCCTGATTCGAAGAAAACAGAGGACCAAATTGTAAAAGATGTTTCTTTTGT 482
Query 483 GACAAAGTTTGAGGAAACAGACAAGTCTGGGGACCAGAAGCAAAATAAGTATATTCGAAA 542
| ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| ||||
Sbjct 483 GTCAAAGTTTGAGAAAACAGAAAAGTCTGGGGACAAGAAGCAAAATAAGCATATTAGAAA 542
Query 543 TGGGTTAGTTTGCAAAGAAGAGAGAGTTGTTGTTGAAGAAAAAATAGGCCCAGATTTGAA 602
||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 543 TGGGTTAGTGTGCAAAGAAGAGAGAGTTGTTGTTGAAGAAAATATATGTCCAGATTTGAA 602
Query 603 TCTTGAGCTTAGGATCAGTCCACCATGGCAAAACCAGAGAGAAATATCTACTTGCACTGC 662
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 603 TCTTGAGCTTAGGATCAGTCCTCCATGGCAAAACCAGAGAGAAATATCTTCTTGCACTGC 662
Query 663 GTCCCGTTTTTACATGGAAAACGACATGGAGTGTAGTAGTGAAACTGTGAAATGTCAAAC 722
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 GTCCCGTTTTTATATGGAAAACGGCATGGAGTGTAGTAGTGAAACTGTGAAATGTCAAAC 722
Query 723 AGAGAATAGTAGCAGCATTAGCTATTCTTCTATTGATATTAGTAGTAGTAACGTTGGTTA 782
|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 723 AGAGGATAGTAGTAGCATTAGCTATTCTTCTATTGATATTAGTAGTAGCAACGTTGGTTA 782
Query 783 TGACTTCTTGGGTTTGAAGACAAGAATTTTGGATTTTCGAAGCTTGGAAATGAAATAAAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGACTTCTTGGGTTTGAAGACAAGAATTTTGGATTTTCGAAGCTTGGAAATGAAATAAAT 842
Query 843 GAATAG 848
||||||
Sbjct 843 GAATAG 848
> Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1
Length=980
Score = 292 bits (158), Expect = 2e-78
Identities = 323/401 (81%), Gaps = 18/401 (4%)
Strand=Plus/Plus
Query 31 ATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGAA 90
||||||||||| || ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 84 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 143
Query 91 GAAGATGAGAGACTAGTCT-CTTACATCAAGT-CTCACGGTGAAGGTTGTTGGCGATCTC 148
|||||| || || || | ||||||| || |||||||||||||| ||||||||||
Sbjct 144 GAAGATCAGCTTCTCGT-TGATTACATC-CGTAAACACGGTGAAGGTTGCTGGCGATCTC 201
Query 149 TTCCTAGAGCCGCTGG-TCTCCTTCGCTGCGGTAAAAGCTGCCGTCTTCG-G-TGGATTA 205
| ||| | ||||| || | | | | || ||||| || || | || | | ||||| |
Sbjct 202 TCCCTCGCGCCGCCGGAT-TACAGAGATGTGGTAAGAGTTGTAG-ATT-GAGATGGATGA 258
Query 206 ACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACAC--ATGATGAAGATGAACTTAT 263
| ||||| |||| |||||||||||||| || ||| ||| | || ||||||||||| ||
Sbjct 259 ATTATCTAAGACCAGATCTCAAAAGAGGCAA-TTT-CACTGAAGAAGAAGATGAACTCAT 316
Query 264 CATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGC-GGCGAGATTACCTG 322
||||||||| |||||| | || || ||||| |||||||| || || || ||||||||| |
Sbjct 317 CATCAAGCTCCATAGCTTGCTTGGTAACAAATGGTCTTTAATAGCTGG-GAGATTACCAG 375
Query 323 GAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAAAGAGGAAGCTT-TTG 381
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||
Sbjct 376 GAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTT- 434
Query 382 AGCAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGA 422
||| |||||||||||| ||||||| | |||||||||
Sbjct 435 AGCCGTGGGATTGATCCAAACACTCATCGTCTGATCAACGA 475
> Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1
Length=850
Score = 246 bits (133), Expect = 2e-64
Identities = 302/381 (79%), Gaps = 22/381 (6%)
Strand=Plus/Plus
Query 30 CATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGA 89
|||||||||||||||||| || || |||| |||| |||||||| ||||||||||||||
Sbjct 46 CATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGA 105
Query 90 AGAAGATGAGA-GACTAGTCTCTTACA-TCAAGT-CTCACGGTGAAGGTTGTTGGCGATC 146
||||||| | | | || ||| ||| | || || ||||||||||||||||||||||||
Sbjct 106 AGAAGATCA-ACGTCTCGTCGATTATATTC--GTAATCACGGTGAAGGTTGTTGGCGATC 162
Query 147 TCTTCCTAGAGCCGCTGG-TCTCCTT-CGCTGCGGTAAAAGCTGCCGTCTTCG-G-TGGA 202
|||||||| | ||||||| | | || || || |||||||| || | || | | ||||
Sbjct 163 TCTTCCTAAATCCGCTGGAT-TG-TTGCGTTGTGGTAAAAGTTGTAGA-TT-GAGATGGA 218
Query 203 TTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACACATGATGAAGATGAACTTA 262
|||| || || || |||||||| ||| | || || ||||| |||| |||||| || | |
Sbjct 219 TTAATTACCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCA 278
Query 263 TCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGGCGA-GATTACCT 321
||||||| || |||||| | || || ||||| ||||| ||||| || | || |||||||
Sbjct 279 TCATCAAACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTG-GAAGATTACCA 337
Query 322 GGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATAT-AAAGAGGAAGCTT-T 379
|||||||||||||| || |||||||| || |||||||| ||||| ||| || |||||| |
Sbjct 338 GGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAA-AGAAAGCTTCT 396
Query 380 TGAG-CAAAGGGATTGATCCA 399
| || || ||||||||||||
Sbjct 397 T-AGTCAT-GGGATTGATCCA 415
> Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1
Length=1467
Score = 132 bits (71), Expect = 6e-30
Identities = 255/341 (75%), Gaps = 24/341 (7%)
Strand=Plus/Plus
Query 70 AAAGGTGCTTGGACTAAAGAAGAAGATGAG-AGACTAGTCTCTTACATCAAGTC-TCACG 127
||||| ||||||||| || |||||| || || || |||||||| |||| | |||||
Sbjct 281 AAAGGAGCTTGGACTCCCGAGGAAGATCAGAAG-CTTCTCTCTTACCTCAA-CCGTCACG 338
Query 128 GTGAAGGTTGTTGGCGATCTCTTCCTAG-AGCCGCTGGTCTCCTTCGCTGCGGTAAAAGC 186
|||||||| | |||||| ||| ||| | | ||||| ||| | ||||| ||||||
Sbjct 339 GTGAAGGTGGATGGCGAACTC-TCCCCGAAAAAGCTGGACTCAAGAGGTGCGGCAAAAGC 397
Query 187 TGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATC-TCAAAAGAGGAAACTTTACACA 245
||| | || | ||| ||| ||||| ||||||| | ||||||||||| | || || |
Sbjct 398 TGCAGACTGAGATGGGCTAATTATCTTAGACCTGA-CATCAAAAGAGGAGAGTTCACTGA 456
Query 246 TGATGAAG-ATGAACTTATCATCAAGCTTCATAG-CCTCCTA-GGCAACAAGTGGT-CTT 301
|| |||| ||| | ||||||| ||||| | ||| | | |||||||| |||| |
Sbjct 457 AGACGAAGAATGTTC-TATCATCTCTCTTCA-CGCCCTTC-ACGGCAACAAATGGTCCGC 513
Query 302 TGATTGCGGCG-AGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACA 360
| || || || ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 514 T-ATAGC-TCGTGGATTACCAGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACT 571
Query 361 CATATAAAGAGGAA-GCTT--TTGAGCAAAGGGATTGATCC 398
||||| |||| || | || || || ||||| ||||||||
Sbjct 572 CATATCAAGA--AACGTTTGATTAAG-AAAGGTATTGATCC 609
> Ahg492740 jgi|Araly1|492740|fgenesh2_kg.7__2173__AT4G21440.1
Length=1186
Score = 130 bits (70), Expect = 2e-29
Identities = 174/221 (79%), Gaps = 20/221 (9%)
Strand=Plus/Plus
Query 197 GGTGGATTAACTATCTCCGACCTGATCTCAAA-AGAGGAAACTTTACAC-AT-GATGAAG 253
|||||| ||| ||||||||||| ||| | ||| |||| || || | | | || ||||
Sbjct 262 GGTGGACTAATTATCTCCGACCAGATAT-AAAGCGAGG-AAGGTT-CTCTTTCGAGGAAG 318
Query 254 ATG-AA-C-TTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGG 310
| | || | |||| || ||||||||||| || |||| ||||||||||| ||||||||
Sbjct 319 AAGAAACCATTAT--TC-AGCTTCATAGCTTCTTAGGAAACAAGTGGTCGGCGATTGCGG 375
Query 311 CGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAA-AG 369
| | || ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 376 CCCGTTTGCCTGGAAGAACAGATAACGAGATCAAGAACTTCTGGAACACTCATATAAGAA 435
Query 370 AGGAAGCTT--TTGAGCAAAGGG-ATTGATCCAGCCACTCA 407
|| ||| || || || || ||| |||||||||| |||||
Sbjct 436 AG-AAG-TTACTT-AG-AATGGGGATTGATCCAGTGACTCA 472
> Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1
Length=1149
Score = 100 bits (54), Expect = 2e-20
Identities = 151/196 (77%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 171 TCGCTGCGGTAAAAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCA-AAA 229
||| |||||||| |||||||| || || ||| |||| | ||||||||| |||||| ||
Sbjct 162 TCGGTGCGGTAAGAGCTGCCGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAA 221
Query 230 GAGGAAACTTTACACATGATGAAG-ATGAACTTATCAT-CAAGCTTCATAGCCTC--CTA 285
||| ||| || | ||| |||| | | || ||||| ||| || ||| ||| ||
Sbjct 222 -AGGCTCCTTCACCCCTGAGGAAGAACG-TCTCATCATACAA-CTCCAT--TCTCAGCTC 276
Query 286 GGCAACAAGTGGTCTTTG-ATTGCGGC-GAGATTACCTGGAAGAACAGATAACGAGATCA 343
|||||||| ||| | | | || || || || ||||| ||||||||||||||||||||||
Sbjct 277 GGCAACAAATGGGC-TCGCATGGCTGCTCAG-TTACCAGGAAGAACAGATAACGAGATCA 334
Query 344 AGAACTACTGGAACAC 359
||||||||||||||||
Sbjct 335 AGAACTACTGGAACAC 350
> Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1
Length=1412
Score = 65.8 bits (35), Expect = 6e-10
Identities = 129/172 (75%), Gaps = 16/172 (9%)
Strand=Plus/Plus
Query 199 TGGATTAACTATCTCCGACCTGATC-TCAAAAGAGG-AAACTTTAC---ACATGATGAAG 253
|||| |||||| || ||||||| | |||| ||||| ||| || || ||| || |||
Sbjct 445 TGGACTAACTACCTAAGACCTGA-CATCAAGAGAGGCAAA-TTCACTGTACAAGAAGAAC 502
Query 254 ATGAACTTATCA-TCAAGCTTCATAGC-CTCCTAGGCAACAAGTGGTCTTTGATTGCGGC 311
| ||| |||| |||| || ||| || ||||| || |||| |||||| ||||| |
Sbjct 503 A--AAC-CATCATTCAA-CTCCAT-GCTCTCCTCGGAAACAGGTGGTCAGCAATTGCAAC 557
Query 312 GAGA-TTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACA 362
| ||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 558 -TCACTTACCCAAAAGGACAGACAACGAGATCAAGAACTACTGGAACACACA 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5