BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16730.1
Length=2765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480556 jgi|Araly1|480556|fgenesh2_kg.3__3257__AT2G16730.1 4250 0.0
Ahg491156 jgi|Araly1|491156|fgenesh2_kg.7__589__AT4G35010.1 2235 0.0
> Ahg480556 jgi|Araly1|480556|fgenesh2_kg.3__3257__AT2G16730.1
Length=2715
Score = 4250 bits (2301), Expect = 0.0
Identities = 2565/2693 (95%), Gaps = 15/2693 (1%)
Strand=Plus/Plus
Query 43 aagaagaagaagaTAGTCAAATGAAAATACATTCTTCTGATCATTCATGGCTTTTACTAG 102
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct 13 AAGAAGAAGAAGATAGTCAAATGAGAATACATTCCTCTGATCATTCATGGCTTTTATTAG 72
Query 103 CCGTTCTCGTGATTCTCCTCTCCTTCTCTGGAGCTCTCTCAAGCGATGACAAAGAGAAGA 162
|| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 CCATTCTGGTGATTCTCCTCTCCTTCTCTGGAGCTCTGTCAAGCGATGACAAAGAGAAGA 132
Query 163 AGACGAAATCGGTCGATAAAAAGAAAGAAGTAACTTATGATGGAACGTCTTTGATCATCA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AGACGAAATCGGTCGATAAAAAGAAAGAAGTAACTTATGATGGAACGTCTTTGATCATCA 192
Query 223 ATGGAAATAGAGAACTCCTTTACTCTGGCTCCATACATTACCCTCGTAGCACTCCTGAAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATGGAAATAGAGAACTCCTTTACTCTGGCTCCATACATTACCCTCGTAGCACTCCTGAAA 252
Query 283 TGTGGCCAAACATCATCAAGAGAGCGAAACAAGGCGGTTTGAACACGATTCAGACATACG 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 253 TGTGGCCAAACATCATCAAGAGAGCGAAACAAGGCGGTTTGAACACGATTCAGACATATG 312
Query 343 TTTTTTGGAACGTTCATGAGCCTGAGCAGGGAAAGTTCAATTTTTCGGGTAGAGCCGACT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TTTTTTGGAACGTTCATGAGCCTGAGCAGGGAAAGTTCAATTTTTCGGGTAGAGCCGACT 372
Query 403 TGGTGAAGTTCATAAAATTAATTGAGAAGAATGGTTTGTATGTAACCTTGAGGCTTGGAC 462
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 373 TGGTGAAGTTCATAAAACTAATTGAGAAGAATGGTATGTATGTGACCTTGAGGCTTGGAC 432
Query 463 CTTTTATTCAAGCTGAATGGACTCATGGAGGACTTCCTTACTGGCTGAGGGAAGTTCCCG 522
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 433 CTTTTATTCAAGCTGAATGGACTCATGGAGGACTTCCTTATTGGCTAAGAGAAGTTCCCG 492
Query 523 GGATCTTCTTCCGTACCGATAATGA-ACCTTTCAAGGAACATACAGAGAGATATGTTAAG 581
||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 493 GGATCTTCTTCCGTACCGATAAT-ACACCTTTCAAGGAACATACAGAGAGGTATGTTAAG 551
Query 582 GTGGTACTTGACATGATGAAGGAGGAGAAGCTTTTTGCTTCACAAGGAGGCCCCATTATA 641
||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 552 GTGATACTTGACAAGATGAAGGAGGAGAAGCTTTTTGCTTCGCAAGGAGGCCCCATTATA 611
Query 642 TTAGGACAGATTGAGAATGAGTATAGTGCGGTTCAACGAGCATATAAAGAAGATGGATTA 701
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 612 TTAGGACAGATAGAGAATGAGTATAGTGCGGTCCAACGAGCATATAAAGAAGATGGATTA 671
Query 702 AACTACATTAAGTGGGCATCTAAACTGGTACACTCGATGGATTTGGGGATCCCATGGGTT 761
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 672 AACTACATTAAGTGGGCATCTAAATTGGTACACTCGATGGATTTGGGGATCCCATGGGTT 731
Query 762 ATGTGTAAGCAAAATGATGCTCCTGATCCTATGATCAACGCTTGTAACGGAAGACATTGC 821
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 732 ATGTGTAAGCAAAATGATGCTCCTGATCCTATGATTAACGCTTGTAACGGAAGACATTGC 791
Query 822 GGTGATACATTCCCTGGTCCAAACAAAGACAACAAGCCATCTTTATGGACAGAGAACTGG 881
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 792 GGTGATACATTCCCTGGTCCAAACAAAGAAAACAAGCCGTCTTTATGGACAGAGAATTGG 851
Query 882 ACTACTCAGTTCCGCGTTTTTGGCGATCCCCCAGCACAAAGATCTGTAGAAGATATAGCA 941
||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 852 ACTACGCAGTTCCGAGTTTATGGCGATCCCCCAGCACAAAGATCTGTAGAAGATATCGCC 911
Query 942 TATTCTGTTGCCCGGTTTTTCTCCAAGAATGGAACCCATGTTAACTACTATATGTATCAC 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TATTCTGTTGCCCGGTTTTTCTCCAAGAATGGAACCCATGTTAACTACTATATGTATCAT 971
Query 1002 GGAGGTACTAACTTTGGAAGAACCTCTGCACATTATGTGACAACTCGTTACTACGACGAT 1061
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 972 GGAGGTACTAACTTTGGAAGAACCTCTGCACATTATGTGACCACTCGTTACTACGATGAT 1031
Query 1062 GCACCTCTTGATGAATTCGGACTGGAAAGGGAGCCTAAGTACGGTCATCTAAAGCATCTT 1121
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GCACCTCTTGATGAATACGGATTGGAAAGGGAGCCTAAGTACGGTCATCTAAAGCATCTT 1091
Query 1122 CACAACGCCCTTAACTTGTGCAAGAAGGCACTTCTCTGGGGCCAGCCTCGAGTCGAGAAG 1181
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1092 CACAACGCACTTAACTTGTGCAAGAAGGCACTTCTCTGGGGCCAGCCTAGAGTCGAGAAG 1151
Query 1182 CCTAGCAATGAAACAGAGATTCGATACTACGAGCAGCCTGGAACTAAAGTTTGTGCAGCA 1241
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1152 CCTAGCAATGAAACAGAGATTCGATACTACGAGCAGCCTGGAACGAAAGTTTGTGCGGCG 1211
Query 1242 TTTTTGGCTAACAATAACACAGAAGCTGCAGAAAAAATCAAATTCAGAGG-CAAGGAATA 1300
|||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||
Sbjct 1212 TTTTTGGCTAACAACAACACAGAATCTGCAGAAAAAATCAAATTCA-AGGGCAAGGAATA 1270
Query 1301 TCTTATCCCGCACCGCTCCATCAGTATTCTCCCTGACTGCAAAACCGTTGTTTATAACAC 1360
| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TATTATTCCGCATCGCTCCATCAGTATTCTCCCTGACTGCAAAACCGTTGTTTATAACAC 1330
Query 1361 CGGGGAGATCATCTCTCATCATACTTCAAGAAACTTCATGAAATCGAAAAAAGCGAATAA 1420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1331 CGGGGAGATCATCTCTCATCATACTTCAAGAAACTTCATGAAGTCGAAAAAAGCGAATAA 1390
Query 1421 GAACTTTGATTTCAAAGTGTTCACCGAGTCAGTGCCAAGTAAGATCAAGGGTGACTCTTT 1480
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1391 GAACTTTGATTTCAAAGTCTTCACCGAGACAGTGCCAAGTAAGATCAAGGGTGACTCTTA 1450
Query 1481 TATACCCGTTGAACTCTACGGCTTGACCAAAGATGAGTCTGATTACGGATGGTACACAAC 1540
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 1451 TATACCCGTTGAACTCTACGGCTTGACCAAAGACGAGACTGATTACGGATGGTACACCAC 1510
Query 1541 AAGCTTTAAAATAGATGACAATGACCTCTCTAAGAAGAAAGGAGGTAAGCCTAATCTGAG 1600
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1511 AAGCTTTAAAATAGATGACAATGACCTCTCTAAGAAGAAAGGAAGTAAGCCTACTTTGAG 1570
Query 1601 GATTGCTAGTCTTGGCCACGCGTTGCATGTATGGCTCAATGGAGAATACCTTGGAAACGG 1660
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1571 GATTGCTAGTCTTGGCCACGCGTTACATGTGTGGCTAAATGGAGAATACCTTGGAAACGG 1630
Query 1661 ACATGGTAGCCATGAAGAGAAGAGTTTCGTCTTTCAGAAGCCAGTTACTCTAAAAGAAGG 1720
|||||||||||||||||||||||||||||| ||||| || ||| || |||||||||||||
Sbjct 1631 ACATGGTAGCCATGAAGAGAAGAGTTTCGTTTTTCAAAAACCAATTTCTCTAAAAGAAGG 1690
Query 1721 AGAGAACCACTTAACCATGCTAGGTGTTTTGACGGGATTTCCGGATAGTGGATCTTATAT 1780
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1691 AGAGAACCACCTAACCATGCTAGGCGTTTTGACGGGATTTCCGGATAGTGGATCTTATAT 1750
Query 1781 GGAGCATAGATACACAGGTCCACGTAGTGTTTCCATCTTAGGTTTGGGCTCTGGAACACT 1840
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1751 GGAGCATAGATATACAGGTCCACGTAGTGTTTCCATCTTAGGCTTGGGCTCTGGAACACT 1810
Query 1841 TGATCTCACTGAAGAAAACAAATGGGGAAACAAGGTGGGTATGGAAGGCGAAAGGCTTGG 1900
||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1811 TGATCTCACAGAAGAAAACAAATGGGGAAACAAGGTGGGAATGGAAGGCGAAAAGCTTGG 1870
Query 1901 TATCCACGCCGAAGAAGGATTGAAGAAGGTTAAATGGGAGAAAGCTTCAGGGAAAGAACC 1960
|||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 1871 TATCCACGCCGAGGAAGGATTGAAGAAGGTTAAATGGCAGAAATTTTCAGGAAAAGAACC 1930
Query 1961 GGGAATGACATGGTACCAGACATACTTCGATGCACCAGAGAGCCAAAGTGCAGCAGCAAT 2020
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1931 GGGGCTTACATGGTACCAGACATACTTCGATGCACCAGAGAGCCAAAGTGCAGCAGCAAT 1990
Query 2021 TAGGATGAACGGAATGGGGAAAGGTTTGATTTGGGTGAACGGAGAAGGTGTTGGTCGATA 2080
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 TAGGATGAATGGAATGGGGAAAGGTTTGATTTGGGTGAACGGAGAAGGTGTTGGTCGATA 2050
Query 2081 TTGGATGTCGTTTCTATCGCCTTTAGGACAGCCTACGCAAATCGAGTATCACATCCCTAG 2140
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 TTGGATGTCGTTTTTATCGCCTTTAGGACAGCCTACGCAAATCGAGTATCACATCCCTAG 2110
Query 2141 GTCTTTCTTGAAGCCCAAGAAAAATCTTCTGGTTATATTTGAGGAAGAACCAAATGTGAA 2200
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 2111 GTCTTTCTTGAAGCCCAAGAAAAACCTTTTGGTTATATTTGAGGAAGAGCCAAATGTGAA 2170
Query 2201 GCCAGAGCTTATCGACTTTGTCATCGTCAATAGAGATACGGTGTGTTCTTATATTGGAGA 2260
|||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||
Sbjct 2171 GCCAGAGCTTATCGACTTTGTCATTATCAATAGAGACACGGTGTGTTCTCACATTGGAGA 2230
Query 2261 AAACTACACTCCTAGTGTCCGTCACTGGACCAGGAAGAATGACCAAGTTCAGGCCATCAC 2320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2231 AAACTACACTCCTAGTGTCCGACACTGGACCAGGAAGAATGACCAAGTTCAGGCCATCAC 2290
Query 2321 TGATGACGTGCATCTCACGGCTAATCTCAAATGTTCCGGCACAAAGAAAATCTCCGCTGT 2380
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 2291 TGATGACGTGCATCTCACGGCTAGTCTCAAATGTTCCGGCACAAAGAAGATCTCCGAAGT 2350
Query 2381 GGAATTCGCAAGCTTTGGGAATCCTAATGGGACTTGTGGCAACTTCACTCTTGGAAGTTG 2440
||||||||| |||||||| || ||||||||||||||||| |||||||||||||||| |||
Sbjct 2351 GGAATTCGCTAGCTTTGGAAACCCTAATGGGACTTGTGGAAACTTCACTCTTGGAACTTG 2410
Query 2441 TAATGCTCCTGTTTCTAAGAAAGTCGTTGAAAAGTACTGTTTGGGTAAAGCAGAGTGTGT 2500
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2411 CAATGCTCCTGTCTCTAAGAAAGTCGTTGAAAAGTACTGTTTGGGTAAAGCAGAGTGTGT 2470
Query 2501 GATTCCGGTGAACAAGAGTACGTTCGAGCAAGACAAAAAGGATTCATGTCCCAAAGTCGA 2560
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2471 GATTCCGGTGAACAAGAGTACGTTCCAGCAAGACAAAAAGGATTCATGTCCCAAAGTCGA 2530
Query 2561 GAAGAAGCTTGCGGTACAAGTCAAGTGTGGCCGTGACAAGAAGAACTAAGGATATATATT 2620
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2531 GAAGAAGCTTGCTGTACAAGTCAAGTGTGGTCGTGACAAGAAGAACTAAGGATATAT-TT 2589
Query 2621 TTATTTGCTTCGCTGAACGGTTTTATACCTAATGTTTTTGT-AGAT-ACTAAAATT-ATG 2677
||||||||||||||||| || |||| ||||||||| | | || | || | || ||
Sbjct 2590 --ATTTGCTTCGCTGAACGATTCAATACTTAATGTTTTAATTA-ATTA-TATA-TTGATT 2644
Query 2678 CATT-GATTTTTTGTTCCATTTTTGAATTTATTAACTAAAATGTTTATCATAC 2729
||| ||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2645 -ATTTGATTTGTTGTTCCATTTTTGAATTTATTAATTAAAACGTTTATCATAC 2696
> Ahg491156 jgi|Araly1|491156|fgenesh2_kg.7__589__AT4G35010.1
Length=2794
Score = 2235 bits (1210), Expect = 0.0
Identities = 2050/2454 (84%), Gaps = 64/2454 (3%)
Strand=Plus/Plus
Query 198 TATGATGGAACGTCTTTGATCATCAATGG-AAATAGAGAACTCCTTTACTCTGGCTCCAT 256
||||||||||| ||||||||||| |||| ||| ||||| || ||||||||||| || ||
Sbjct 237 TATGATGGAACCTCTTTGATCATTGATGGCAAA-AGAGAGCTTCTTTACTCTGGATCTAT 295
Query 257 ACATTACCCTCGTAGCACTCCTGAAATGTGGCCAAACATCATCAAGAGAGCGAAACAAGG 316
||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 296 TCATTACCCTAGAAGCACTCCTGAAATGTGGCCAAGTATCATCAAGAGAGCCAAACAAGG 355
Query 317 CGGTTTGAACACGATTCAGACATACGTTTTTTGGAACGTTCATGAGCCTGAGCAGGGAAA 376
|||||||||||||||||||||||||||||| ||||| || ||||||||| | || |||||
Sbjct 356 CGGTTTGAACACGATTCAGACATACGTTTTCTGGAATGTACATGAGCCTCAACAAGGAAA 415
Query 377 GTTCAATTTTTCGGGTA-GAGCCGACTTGGTGAAGTTCATAAAATTAATTGAGAAGAATG 435
|||||| ||||| || | |||| || ||||||||||||||||| || |||||||||||||
Sbjct 416 GTTCAACTTTTCTGG-ACGAGCTGATTTGGTGAAGTTCATAAAGTTGATTGAGAAGAATG 474
Query 436 GTTTGTATGTAACCTTGAGGCTTGGACCTTTTATTCAAGCTGAATGGACTCATGGAGGAC 495
| ||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 475 GCATGTATGTGACCTTAAGGCTTGGACCGTTTATCCAAGCTGAATGGACTCATGGAGGAC 534
Query 496 TTCCTTACTGGCTGAGGGAAGTTCCCGGGATCTTCTTCCGTACCGATAATGAACCTTTCA 555
||||||| ||||| || |||||||| || || ||||||||||| |||||| |||| ||||
Sbjct 535 TTCCTTATTGGCTTAGAGAAGTTCCTGGAATTTTCTTCCGTACAGATAATAAACCATTCA 594
Query 556 AGGAACATACAGAGAGATATGTTAAGG-TGGTACTTGACATGA-TGAAGGAGGAGAAGCT 613
||||||||||||| || ||||| | || || |||| |||| | |||||||||| ||| |
Sbjct 595 AGGAACATACAGAAAGGTATGT-ACGGATGATACTCGACAA-ACTGAAGGAGGA-AAGAT 651
Query 614 T-TTTGCTTCACAAGGAGGCCCCATTATATTAGGACAGATTGAGAATGAGTATAGTGCGG 672
| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 652 TGTTTGCGTCACAAGGAGGCCCCATTATATTAGGACAGATAGAGAACGAGTATAGCGCGG 711
Query 673 TTCAACGAGCATATAAAGAAGATGGATTAAACTACATTAAGTGGGCATCTAAACTGGTAC 732
||||||| ||||||||| |||| || ||||||||||||||||||||||||||| ||||
Sbjct 712 TTCAACGTGCATATAAACAAGACGGGTTAAACTACATTAAGTGGGCATCTAAATTGGTTG 771
Query 733 ACTCGATGGATTTGGGGATCCCATGGGTTATGTGTAAGCAAAATGATGCTCCTGATCCTA 792
|||| ||| | | |||||||||||||||||||| ||||| || || |||||||||||||
Sbjct 772 ACTCAATGAAACTCGGGATCCCATGGGTTATGTGCAAGCAGAACGACGCTCCTGATCCTA 831
Query 793 TGATCAACGCTTGTAACGGAAGACATTGCGGTGATACATTCCCTGGTCCAAACAAAGACA 852
||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 832 TGATCAATGCTTGTAATGGAAGACATTGCGGTGATACTTTCCCCGGTCCAAACAAAGAAA 891
Query 853 ACAAGCCATCTTTATGGACAGAGAACTGGACTACTCAGTTCCGCGTTTTTGGCGATCCCC 912
|||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 892 ACAAACCATCTTTATGGACTGAGAATTGGACTACTCAGTTCCGCGTGTTTGGTGATCCGC 951
Query 913 CAGCACAAAGATCTGTAGAAGATATAGCATATTCTGTTGCCCGGTTTTTCTCCAAGAATG 972
|| | || ||||| ||||||||||| || ||||| ||||| || || ||||||||||| |
Sbjct 952 CAACTCAGAGATCAGTAGAAGATATCGCTTATTCAGTTGCTCGATTCTTCTCCAAGAACG 1011
Query 973 GAACCCATGTTAACTACTATATGTATCACGGAGGTACTAACTTTGGAAGAACCTCTGCAC 1032
||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1012 GAAGCCATGTGAACTACTACATGTACCACGGAGGGACTAACTTTGGAAGAACCTCTGCAC 1071
Query 1033 ATTATGTGACAACTCGTTACTACGACGATGCACCTCTTGATGAAT-TCGGACTGGAAAGG 1091
||||||| || ||| | |||||||| ||||||||||||||||||| | || | || ||
Sbjct 1072 ATTATGTAACCACTAGATACTACGATGATGCACCTCTTGATGAATAT-GGTTTAGAGAGA 1130
Query 1092 GAGCCTAAGTACGGTCATCTAAAGCATCTTCACAACGCCCTTAACTTGTGCAAGAAGGCA 1151
||||||||||| |||||||| ||||||||||||| || |||||| | ||||||||| ||
Sbjct 1131 GAGCCTAAGTATGGTCATCTTAAGCATCTTCACAGTGCTCTTAACCTCTGCAAGAAGCCA 1190
Query 1152 CTTCTCTGGGGCCAGCCTCGAGTCGAGAAGCCTAGCAATGAAACAGAGATTCGATACTAC 1211
||||| ||||| |||||| | |||||| ||| | || || ||||||||| ||||||||
Sbjct 1191 CTTCTTTGGGGTCAGCCTAAAACCGAGAAACCTGGAAAAGATACAGAGATTAGATACTAC 1250
Query 1212 GAGCAGCCTGGAACTAAAGTTTGTGCAGCATTT-TTGGCTAACAATAACACAGAAGCTGC 1270
|| || |||||||| ||| |||||| || ||| ||||||||||| || || ||||||||
Sbjct 1251 GAACAACCTGGAACCAAAACTTGTGCCGC-TTTCTTGGCTAACAACAATACCGAAGCTGC 1309
Query 1271 AGAAAAAATCAAATTCAGAGG-CA-AGGAATATCTT-ATCCCGCAC-CGCTCCATCAGTA 1326
||||| |||||||||| ||| || || |||| | | ||| ||| | || ||||| ||||
Sbjct 1310 AGAAACTATCAAATTCA-AGGGCAGAG-AATA-CGTGATCGCGC-CTCGTTCCATTAGTA 1365
Query 1327 TTCT-CCCTGACTGCAAAACCGTTGTTTATAACACCGGGGAGATCATCTCTCATCATACT 1385
|||| ||| || || ||||| |||||||| ||||| | |||| | ||||| || |||
Sbjct 1366 TTCTTCCC-GATTGTAAAACTGTTGTTTACAACACTGCACAGATTGTTTCTCAACACACT 1424
Query 1386 TCAAGAAACTTCATGAAATCGAAAAAAGCGAATAAGAACTTTGATTTCAAAGTGTTCACC 1445
||||| ||||| ||||| || ||||| ||||| ||||| |||||||||||||| |||||
Sbjct 1425 TCAAGGAACTTTATGAAGTCTAAAAAGGCGAACAAGAAGTTTGATTTCAAAGTATTCACT 1484
Query 1446 GAGTCAGTGCCAAGTAAGA-TC-AAGGGTGACTCTTTTATACCCGTTGAACTCTACGGCT 1503
||| || |||| ||||| | | |||| |||||| ||||| ||||| || ||||| |
Sbjct 1485 GAGACATTGCCTAGTAA-ACTGGAAGGCA-ACTCTTACATACCTGTTGAGCTTTACGGTT 1542
Query 1504 TGACCAAAGATGAGTCTGATTACGGATGGTACACAACAAGCTTTAAAATAGATGACAATG 1563
|||| ||||| || | || || |||||||||||||||||||| || | || | |||
Sbjct 1543 TGACTAAAGACAAGACAGACTATGGATGGTACACAACAAGCTTCAAGGTTCATAAGAATC 1602
Query 1564 ACCT-CTCTAAGAAGAAAGGAGGTAAGCCTAATCTGAGGATTGCTAGTCTTGGCCACGCG 1622
|| | | ||| |||||||||| |||| || | ||||||||||||||||||| ||||||
Sbjct 1603 ACTTAC-CTACCAAGAAAGGAGTTAAGACTTTTGTGAGGATTGCTAGTCTTGGACACGCG 1661
Query 1623 TTGCATGTATGGCTCAATGGAGAATACCTTGGAAACGGACATGGTAGCCATGAAGAGAAG 1682
||||| | ||||| || || ||||||||||||| |||||||| |||||||||||||||
Sbjct 1662 TTGCACATTTGGCTTAACGGCGAATACCTTGGAAGTGGACATGGAAGCCATGAAGAGAAG 1721
Query 1683 AGTTTCGTCTTTC-AGAAGCCAG-TTACTCTAAAAGAAGGAGAGAACCA-CTTA-ACCAT 1738
||||| || |||| |||| | || |||| || |||| ||||||||| || |||| | ||
Sbjct 1722 AGTTTTGT-TTTCCAGAAAC-AGGTTACACTTAAAGCAGGAGAGAATCATCTTATA--AT 1777
Query 1739 GCTAGGTGTTTTGACGGGATTTCCGGATAGTGGATCTTATATGGAGCATAGATACACAGG 1798
||| |||||| | || ||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 1778 GCTTGGTGTTCTCACAGGATTCCCAGACAGTGGATCTTACATGGAGCATAGATACACCGG 1837
Query 1799 TCCACGTAGTGTTTCCATCTTAGGTTTGGGCT-CTGGAACACTTGATCTCACTGA-AGAA 1856
||| ||| ||||||||||| |||| ||| || |||||||||||||||||||||| || |
Sbjct 1838 TCCTCGTGGTGTTTCCATCCTAGGATTGA-CTTCTGGAACACTTGATCTCACTGAGAGCA 1896
Query 1857 AACAAATGGGGAAACAAGGTGGGTATGGAAGGCGAAAGGCTTGGTATCCACGCCGAAGAA 1916
|||||||||||||||| | ||||||||||| |||| || || |||||| | || |||
Sbjct 1897 G-CAAATGGGGAAACAAGATCGGTATGGAAGGTGAAAAACTCGGAATCCACACTGAGGAA 1955
Query 1917 GGATTGAAGAAGGTTAAATGGGAGAAAGCTTCAG-GGAAA-GAACCGGGAATGACATGGT 1974
|| || ||||||||| ||||| | |||| |||| ||||| | ||| ||| | |||||||
Sbjct 1956 GGTTTAAAGAAGGTTGAATGGAA-AAAG-TTCACCGGAAAAGCACCAGGACTTACATGGT 2013
Query 1975 ACCAGACATACTTCGATGCACCAGAGAGCC-AAAGTGCAGCAGCAATTAGGATGAACGGA 2033
| ||| ||||||| |||||||||||||||| ||| ||||| || ||| | |||||||||
Sbjct 2014 ATCAGGCATACTTTGATGCACCAGAGAGCCTAAAC-GCAGCGGCGATTCGCATGAACGGA 2072
Query 2034 ATGGGGAAAGGTTTGATTTGGGTGAACGGAGAAGGTGTTGGTCGATATTGG-ATGTCGTT 2092
||||| ||||| ||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 2073 ATGGGAAAAGGGTTGATTTGGGTGAACGGAGAAGGTGTTGGAAGATATTGGCAA-TCGTT 2131
Query 2093 TCT-ATCGCCTTTAGGACAGCCTACGCAAATCGAGTATCACATCCCTAGGTCTTTCTTGA 2151
|| ||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 2132 -CTTATCTCCATTAGGTCAACCTACACAAATAGAGTATCACATCCCTAGATCTTTCTTGA 2190
Query 2152 AGCCCAAGAAAAATCTTCTGGTTATATTTGAGGAAGAACCAAATGTGAAGCCAGAGCTTA 2211
|||||||||| || ||||| ||||| ||||||||||| || ||||||||||| |||||||
Sbjct 2191 AGCCCAAGAAGAACCTTCTTGTTATCTTTGAGGAAGAGCCTAATGTGAAGCCTGAGCTTA 2250
Query 2212 TCGACTTTGTCATCGTCAATAGAGATACGGTGTGTTCTTATATTGGAGAAAACTACACTC 2271
| |||||||||||||| || ||||| || || ||||||||| | || |||||||||||||
Sbjct 2251 TGGACTTTGTCATCGTTAACAGAGACACTGTTTGTTCTTATGTCGGTGAAAACTACACTC 2310
Query 2272 CTAGTGTCCGTCACTGGACCAGGAAG-AATGACCAAGTTCAGGCCATCACTGATGACGTG 2330
| ||||| | || ||||| |||||| || || || || || |||||||| ||| | |||
Sbjct 2311 CAAGTGTTAGACATTGGACTAGGAAGCAA-GATCAGGTCCAAGCCATCACAGATAATGTG 2369
Query 2331 CA-TCTCACGGCTA-ATCTCAAATGTTCCGGCACAAAGAAAATCTCCGCTGTGGAATTCG 2388
| ||| ||||||| | || ||||| || ||||| ||||||||| | || || || ||||
Sbjct 2370 -AGTCTTACGGCTACA-CTTAAATGCTCAGGCACTAAGAAAATCGCAGCCGTTGAGTTCG 2427
Query 2389 CAAGCTTTGGGAATCCTAATGGGACTT-GTGGCAACTTCACTCTTGGAAGTTGTAATGCT 2447
| ||||| || || |||| | || || |||| |||||||| ||||| | ||||||||||
Sbjct 2428 CTAGCTTCGGAAACCCTA-TCGGTGTTTGTGGAAACTTCACACTTGGTACTTGTAATGCT 2486
Query 2448 CCTGTTTCTAAGAAAGTCGTTGAAAAGTACTGTTTGGGTAAAGCAGAGTGTGTGATTCCG 2507
|||||||| ||| ||||| | || ||| |||||||||| ||||||||||||||||||||
Sbjct 2487 CCTGTTTCAAAGCAAGTCATCGAGAAGCACTGTTTGGGGAAAGCAGAGTGTGTGATTCCA 2546
Query 2508 GTGAACAAGAGTACGTTCGAGCAAGACAAAAAGGATTCATGTCCCAAAGTCGAGAAGA-A 2566
||||||||||| |||||| | |||||||| |||||||| ||| || || | ||||| |
Sbjct 2547 GTGAACAAGAGCACGTTCCAACAAGACAAGAAGGATTCGTGTAAGAACGTTGCGAAGACA 2606
Query 2567 GCTTGCGGTACAAGTCAAGTGTGGCCGTGACAAGAAGAACTAAG-GATATATAT 2619
|| || |||||||||||||||||||||| ||||||||||| || | |||||||
Sbjct 2607 -CTCGCCGTACAAGTCAAGTGTGGCCGTGGCAAGAAGAACTGAGAG-TATATAT 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104329181055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5