BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16740.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480557 jgi|Araly1|480557|fgenesh2_kg.3__3258__AT2G16740.1 1003 0.0
> Ahg480557 jgi|Araly1|480557|fgenesh2_kg.3__3258__AT2G16740.1
Length=650
Score = 1003 bits (543), Expect = 0.0
Identities = 615/649 (95%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 1 AAGCATTCCTGTTTGCAAGAGAATCACAAATCTTTGCTTACGGTTCACGCTTTAAAAACA 60
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1 AAGCTTTCCTGTTTGCAAGAGAATCACCAATCTTTGCTTACGGTTCACGCTTTAAAAATA 60
Query 61 CAACTCTCATTCTCCTTCTCTTCACAAACCACTCAT--A-ttttttttCACA-TACTTCT 116
|| |||||||||||||||| | ||||||||| ||| | |||||||||||| ||||||
Sbjct 61 CACCTCTCATTCTCCTTCTATAAACAAACCACCCATAGATTTTTTTTTCACACAACTTCT 120
Query 117 TTGTAGTGCTACTTTCCATTATATCAAACACTCAGCAACCTGATGGCAACGAGACGGATA 176
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGTAGTGCTAGTTTCCATTGTATCAAACACTCAGCAACCTGATGGCAACGAGACGGATA 180
Query 177 TTGAAAGAATTGAAGGAGTTGCAAAGAGACCCTCCTGTATCATGCAGTGCAGGTCCAACA 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAAGAACTGAAGGAGTTGCAAAGAGACCCTCCTGTATCATGCAGTGCAGGTCCAACA 240
Query 237 GGAGAAGATATGTTCCACTGGCAAGCTACTATAATGGGTCCGAATGAAAGTCCTTACT-C 295
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
Sbjct 241 GGAGAAGATATGTTCCACTGGCAAGCTACTATAATGGGTCCGAACGAAAGTCCGTA-TGC 299
Query 296 CGGAGGTGTTTTCCTTGTCAATATTCATTTCCCTCCTGATTATCCTTTTAAACCTCCCAA 355
||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 300 CGGCGGTGTTTTCCTTGTCAATATCCATTTCCCACCTGATTATCCTTTCAAACCTCCTAA 359
Query 356 GGTTGTATTCAGAACCAAAGTGTTTCACCCAAACATCAACAGTAATGGAAACATATGTTT 415
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GGTTGTATTCCGAACCAAAGTGTTTCACCCAAACATCAACAGCAATGGAAACATATGTTT 419
Query 416 GGACATTCTCAAAGACCAATGGAGCCCTGCCCTTACCATTTCTAAGGTGCTTCTCTCTAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGACATTCTCAAAGACCAATGGAGCCCTGCCCTTACCATTTCTAAGGTGCTTCTCTCTAT 479
Query 476 ATGCTCTCTTCTAACAGATCCAAACCCTGACGACCCTCTGGTGCCAGAGATAGCTCACAT 535
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 480 ATGCTCTCTTCTAACAGATCCAAACCCTGACGATCCTCTGGTGCCAGATATAGCTCACAT 539
Query 536 ATACAAAACTGACAAGACCAAATATGAAGCCATGGCTCGAAGCTGGACCCAGAAGTATGC 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATACAAAACTGACAAGGCCAAATATGAAGCCATGGCTCGAAGCTGGACCCAGAAGTATGC 599
Query 596 CTTGTTTTAAAGCTCACAATTCCTCtttttttcctttttattttGGTTT 644
||||||||||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 600 CTTGTTTTAAAGCTCACAACTCCTCATTTTT-CCTTTTTCTTTTGGTTT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5