BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16750.1
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1 2191 0.0
> Ahg480558 jgi|Araly1|480558|fgenesh2_kg.3__3259__AT2G16750.1
Length=2341
Score = 2191 bits (1186), Expect = 0.0
Identities = 1348/1425 (95%), Gaps = 16/1425 (1%)
Strand=Plus/Plus
Query 840 CAAAGATCTTGCGAAAACAACGGGTCAAGAGAAGAGAAAGATATCAGGAAGATCTCTATC 899
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 905 CAAAGAGCTTGCGAAAACAACGGGTCAAGAGAAGAGGAAGATTTCAGGAAGATCGCTATC 964
Query 900 TCTTCCATCGGTAGAGGTAGTAGACCAGACACCAGGTTGGCCATTACTAAGAACATCCAC 959
||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||
Sbjct 965 TCTTCCATCGGTAGAGGTAGTAGACCAGACACCGGGCTGGCCATTGCTAAGAACAACCAC 1024
Query 960 TTTAGCTACTCCAATGGTTCAACATCAGACTAGGAAAATATCAGTTGTCAATTGGGTCAT 1019
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TTTAGCTACTTCAATGGTTCAGCATCAGACTAGGAAAATATCAGTTGTCAATTGGGTCAT 1084
Query 1020 GAGCTTGCCTGAAAGATTTCCACATCATCCGAATCA-GACTTGTCAACAGAGCTTTTGT- 1077
||||||||||||| |||||||||||||||||||| | ||||| ||||| |||||||| |
Sbjct 1085 GAGCTTGCCTGAACGATTTCCACATCATCCGAAT-ATGACTTCTCAACCGAGCTTTT-TC 1142
Query 1078 GATAAACAACTTAAAGACATACTCAAGGACATAAACAGATGGTTTAGCTATGATGTTCTC 1137
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1143 GATAAACAACTTAAAGACATACTAAAGGAAATAAACAGATGGTTCAGCTATGATGTTCTC 1202
Query 1138 AAGACAGCAACATCAGATTTCTCTTTAGAGAATCTGATCGGAAAAGGAGGATGTAATGAA 1197
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1203 AAGATAGCAACATCAAATTTCTCTTCAGAGAATCTGATCGGAAAAGGAGGATGTAACGAA 1262
Query 1198 GTTTACAAAGGGTTTCTTGAAGATGGTAAAGGCGTGGCAGTGAAGATCTTGAAACCATCT 1257
|| ||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||
Sbjct 1263 GTGTACAAAGGGTTTCTTGAAGATGGAAAAGCCGTGGCGGTGAAGATCTTGAGACCATCT 1322
Query 1258 GTAAAAGAAGCAGTGAAGGAGTTTGTTCATGAAGTGAGCATAGTCTCTTCTTTGAGTCAC 1317
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1323 GTAAAAGAAGCAGTGAAGGAGTTTGTTCATGAAGTGAGCATAATATCTTCTTTGAGTCAC 1382
Query 1318 TCAAACATCTCTCCTTTGATTGGTGTATGCGTTCATTACAACGACCTAATCTCTGTTTAC 1377
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1383 TCAAACATCTCTCCTTTGATTGGTCTATGCGTTCATTACAACGATCTAATCTCTGTTTAC 1442
Query 1378 AATCTCTCTTCCAAAGGGAGTTTGGAGGAGACTCTTCAGGGTAAGCATGTCTTGAGATGG 1437
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1443 AATCTCTCATCCAAAGGGAGTTTGGAGGAAACTCTTCAGGGTAAGCATGTATTGAGATGG 1502
Query 1438 GAAGAGAGACTCAAGATAGCAATAGGGTTAGGGGAAGCTCTTGATTATCTACATAACCAA 1497
||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1503 GAAGAGAGATTCAAGATAGCAATTGGGTTAGGGGAAGCTCTTGATTATCTCCATAACCAA 1562
Query 1498 TGTTCTAATCCTGTGATCCACAGAGATGTCAAATCTTCCAATGTTCTTCTCTCAGATGAG 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1563 TGTTCTAATCCTGTGATCCACAGAGATGTCAAATCTTCAAATGTTCTTCTCTCAGATGAG 1622
Query 1558 TTCGAACCTCAGCTTTCGGATTTCGGTCTTTCGATGTGGGGATCGAAGTCTTGTCGATAC 1617
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1623 TTCGAACCTCAGCTTTCGGATTTCGGTCTTTCGATGTGGGGATCAAAGTCTTGTCCATAC 1682
Query 1618 ACGATACAAAGAGATGTGGTGGGTACATTTGGATATCTAGCTCCTGAGTACTTTATGTAT 1677
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1683 ACGATACAAAGAGATGTGGTGGGGACATTTGGATATCTTGCTCCTGAGTACTTTATGTAT 1742
Query 1678 GGAAAAGTTAGCGATAAAGTCGATGTATATGCCTTTGGAGTAGTTTTGCTTGAACTCATT 1737
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1743 GGAAAAGTTAGCGATAAAGTTGATGTATATGCCTTTGGAGTAGTTTTGCTCGAACTCATT 1802
Query 1738 TCAGGAAGAACTTCTATTTCATCTGATAGCCCAAGAGGGCAAGAGAGTTTGGTCATGTGG 1797
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1803 TCAGGAAGAACTCCTATTTCATCTGATAGCCCAAGAGGACAAGAGAGTTTGGTCATGTGG 1862
Query 1798 GCAAAACCAATGATCGAAAAAGGCAATGCAAAAGAGCTCTTGGATCCGAATATTGCTGGT 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1863 GCAAAACCAATGATCGAAAAAGGCAATGCAAAAGAGCTCTTGGATCCGAATATTTCTGGG 1922
Query 1858 ACTTTCGACGAGGATCAGTTTCATAAGATGGTTCTTGCTGCTACACATTGTCTCACAAGA 1917
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 ACTTTCGATGAGGATCAGTTTCATAAGATGGTTCTTGCTGCTACACATTGTCTCACAAGA 1982
Query 1918 GCAGCCACTTATCGTCCCAATATCA-AGGAGATATTGAAGCTGCTAAGAGGCGAAGATGA 1976
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1983 GCAGCCACTTATCGTCCCAATATCAGAC-AGATATTGAAGCTGCTAAGAGGCGAAGATGA 2041
Query 1977 TGTCTCGAAATGGGTGAAGATAGAAGAAGATGACGAAGATGGTTTCGACGACGAGGTTTA 2036
||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 2042 TGTCTCGAAATGGGTGAAGATAGTAGAAGAAGACGAAGATTGTTTCGACGACGAGGTTTA 2101
Query 2037 CCCAAATTCGAACACAGAATTACACTTGAGCCTCGCGATGGTTGACGTGGAGGATAATGA 2096
|||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 2102 CCCAAATTCGAATACAGAATTACACTTGAGCCTCGCGATGGTCGATGTGGAAGATAATGA 2161
Query 2097 CTCTGTGTCAAACAGTAGCTTGGAGAGAAGTAACAACAGCcttttttcttcttcttcttc 2156
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2162 CTCTGTGTCAATCAGTAGCTTGGAGAGAAGTAACAACAGCCTTTTTTCTTCTTCTTC--C 2219
Query 2157 ttcCTCTCAGGAGCTTCAGTCTTAATTAGGGTTTGTGCTTAGCTTGTCTCCAGTTCACTT 2216
| | || |||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 2220 T-C-TC--AGGAGCTTCAGTCTTAATTAGGGTTTGTGCGTAG-T-GTCTCCAGTTCACTT 2273
Query 2217 GAGGA-CTACGTCATCTCTTACGGTGTCTGCACTCAATATGTCAC 2260
||||| | ||||||||||| || || |||||||||||||| ||||
Sbjct 2274 GAGGATC-ACGTCATCTCTCACTGTATCTGCACTCAATATATCAC 2317
Score = 1088 bits (589), Expect = 0.0
Identities = 764/843 (91%), Gaps = 33/843 (4%)
Strand=Plus/Plus
Query 27 aaaaattaaaaattaaaaaaaggaagtaaattgaaaaaacaaaaTTGGTCCCCTGTCTTC 86
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 35 AAAAATTAAAAATTAAAAAAAGGAAGTAAATCGGAAAAACAAAATTGGTCCCCTGTCTTC 94
Query 87 TTTTGTTCACTGGACCCTTTTCTTGGCTTCGCTAAATCATACTATCTCTATCTTCTCACC 146
||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 95 TTTTGCTCACTGGACCCTTTTCTTGGCTTCGCTCAATCATACTATCTCTTTCTTCTCACC 154
Query 147 GACACTTTCTTCTTCTTTGATCATATCATATTTATCTTCAC--TACaaaaaaaa-CAAGT 203
||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||| |
Sbjct 155 GACACTTTCTTCTTCTTTGATCATATCATTTTTATCTTCACTATATAAAAAAAATCAA-T 213
Query 204 -AAAATAAAGCCAATCTTCTTAAATATCTCCAGAAGATCTATCAGCATTTACGTA-TTCA 261
|||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 214 CAAAATAAAGCCAATCTTCTTAAATTTCTCCAGAAGATAGATCAGCATTTACGTATTTCA 273
Query 262 GGTCCTCCAA--T-TTCTTCTCACaaag----aaaaag----ga-ag-aaaa-a-aaaga 306
|||||||||| | |||||||||||||| |||||| || || |||| | ||| |
Sbjct 274 GGTCCTCCAATGTGTTCTTCTCACAAAGAAAAAAAAAGTTTTGAGAGCAAAACAGAAA-A 332
Query 307 a--gttgtgagagcaaa-aaaaaaaTGGCAGTGGATAAAGTGATTGTGAAGCAGAGGAAC 363
| | ||| ||| ||| | | ||| ||||||| | || |||||||||||||||||
Sbjct 333 ATGGCAGTG-GAG-AAAGACAGAAA----AGTGGATCATGTAATTGTGAAGCAGAGGAAT 386
Query 364 ATTATATTGGTTGGAATTCCAATTGATGAAAGTGGCGTAGAGGTTTTAAAATGGGCACTT 423
||| ||||||||||||||| |||||||||||||||| |||| | || ||||||||||||
Sbjct 387 ATTGTATTGGTTGGAATTCGAATTGATGAAAGTGGCAAAGAGATCTTGAAATGGGCACTT 446
Query 424 GAAGAAGTTGCAAAACATGGAGATTGTGTTGTTGTTGTCCATGTTTGTTTTACTTATTAC 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 447 GAAGAAGTTGCAGAACATGGAGATTGTGTTGTTGTTGTCCATGTTTGTTTTACTTCTTAC 506
Query 484 CGTGCCTTGAAAAGCAAGTCATCGCTGGATCGGTACTTAAAACCATACATTGAATTCTGC 543
|||||||||||||||||||||||||| |||||||| || || | |||| ||||||||||
Sbjct 507 CGTGCCTTGAAAAGCAAGTCATCGCTTGATCGGTATTTGAATCTTTACAGTGAATTCTGC 566
Query 544 TCAACAAAGAAGATTGAGCTCAAAGGAGAAGTGTTAAAGGGAAATTCAGTTCTAGGGGTT 603
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 567 TCAACAAAGAAGATTGAGCTCAAAGGAGAAGTTTTGAAGGGAAATTCAGTTCTAGGGGTT 626
Query 604 TTAGTTAAAGAAGCAAAGAGATACAACGCCATGTCAGTTGTTGTTGGAGTTAAACAACAA 663
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTAGTTAAAGAGGCAAAGAGATACAACGCCATGTCAGTTGTTGTTGGAGTTAAACAACAA 686
Query 664 AGTAAATTAAGTCTAAAAATAGCTAAAGGCTGCGCAAAAGAGCTTCCTTCAACCACCGAT 723
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 687 AGAAAATTAAGTCTAAAAATAGCTAAAGGCTGCGCAAAAGAGCTTCCCTCAACAACCGAT 746
Query 724 ATTTTGGCCATCCACAGAGGGAATATAGTCTTTAGACGTTCCAACCATTACCAACTACCT 783
||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 747 GTTTTGGCCATCCATAGAGGGAGTATAGTCTTTAGACGGTCCAACCATTACCAACTACCT 806
Query 784 CTTGCTCAAAAGATAAGTTCAAGACCAAGTTCTGAACTCT-CTGAAGGATTTTCAGACAA 842
|||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 807 CTTGCTCAAAAGATGAGTTCAAGACCAAGTTCTGAACT-TGCTGATGGATTTTCAGACAA 865
Query 843 AGA 845
|||
Sbjct 866 AGA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91492768490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5