BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16760.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1 1709 0.0
Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439 998 0.0
> Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1
Length=1107
Score = 1709 bits (925), Expect = 0.0
Identities = 1049/1109 (95%), Gaps = 7/1109 (1%)
Strand=Plus/Plus
Query 1 ATTTCTCTCTACCCGTTTTTTCTCTTATTTCaaaaaaaaaTGTCTCCC-TCGTTTTGCTC 59
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 1 ATTTCTCTCTACCCGTTTTTTCTCTTATTTC-AAAAAAAATGTC-CCCGTCGTTTTGCTC 58
Query 60 CGGCCGATGCACCGCCGCGCTCTTCCTCGTTATCTCCGCCGTTCCAATAGCTTACCTCAT 119
|||| ||||| |||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 CGGCAGATGCTCCGCTGCTCTCTTCCTCGTAATCTCCGCCGTTCCAATAGCTTACCTCAT 118
Query 120 CTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTCTCTTACCAAAGCTCCGGCTTCTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 CTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTCTCTTACCAAAGCTCTGGCTTCTT 178
Query 180 CCGAGAGTGCGCCAAGTGGGACGATGTTGGTCGGAGATTCCTTGTCTCCTTCATGGACGG 239
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 CCGCGAGTGCGCCAAATGGGACGATGTTGGTCGGAGATTCCTCGTCTCCTTCATGGACGG 238
Query 240 TGGCGGAGTCGGCGAGATTGTTCCTAAAGACTCCGACGACGTTCTTGAAGAAGTCACTTT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 TGGCGGAGTCGGCGAGATTGTTCCTAAAGATTCCGACGACGTTCTTGAAGAAGTCACTTT 298
Query 300 GGTCAAAGACGTTGACCTCGCCGGTAACGCTTCCCTAGGAATCGCTATCGACCACGTCAG 359
||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 299 GGTCAAAGATGTTGACCTCGCCGGTAACGCTTCCCTAGGAATCGTTATCGACCGTGTTAG 358
Query 360 AAACCGTCTCCTTGTCGCCGTCGCCGACTTGCTTGGAAATCGTTATAGTGCTTTAGCTGC 419
||||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 359 GAACCGTCTCCTCGTAGCCGTCGCCGACTTGCTTGGAAACCGGTATAGTGCTTTAGCAGC 418
Query 420 TTATGATTTGTCCACGTGGCGTCGTCTCTTCCTCGCCGAACTTAGTGGTCAGAGTAAAGA 479
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 419 CTATGATTTGTCCACGTGGCGTCGTCTCTTCCTCGCCGAGCTTAGTGGTCATAGTAACGA 478
Query 480 GAAAACATTTGCAGACGATGTAGCTGTAGATGAACAAGGCAATGCTTATGTGACTGATGC 539
|||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 479 GAAAACGTTTGCAGACGATGTTGCCGTTGATGAACAAGGCAATGCTTATGTGACTGATGC 538
Query 540 AAAAGCTAGTAAAATATGGAAAGTTGATGTTAATGGGAAGCTTGTGAACACTATTACAAG 599
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 AAAAGCTAGTAAAATTTGGAAAGTTGATGTTAATGGAAAGCTTGTGAACACTATTACAAG 598
Query 600 TCCTCTCTTTACACCACCTGGATGGTACAATAACCTTGTTGCTCTTAACGGCATTGTTTA 659
| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 TTCTCTCTTTACTCCACCTGGATGGTACAATAACCTTGTTGCTCTAAACGGCATTGTTTA 658
Query 660 TCACCCCGACGGCTTTCTTATCGTTATCCATACTTTCTCTGGTTACTTATACAAAATTGA 719
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 659 TCACCCCGACGGCTTCCTTATCGTTATTCACACTTTCTCTGGTTACTTATACAAAATTGA 718
Query 720 CTTAACCAATGGGGATGTTAGTAATCAAGTTAGTGTCATTGATGTTTCTGGTGGTACATT 779
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 719 CTTAACCAATGGGGATGTTAGTAATCAAGTTACTGTAATTGATGTTTCTGGTGGTACATT 778
Query 780 GAGGTTTGGAGATGGGCTTGAGTTGTTGTCTCCAACCAAGATTGTTGTTGCAGGTAGCTC 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 GAGGTTTGGAGATGGGCTTGAGTTGTTGTCTCCAACCAAAATTGTTGTTGCAGGTAGCTC 838
Query 840 GTCTACAAAACTGGTTGAGAGTTCAGATGGGTGGAGAACCGCTTCGGTGACGGGTTGGTT 899
|||| | |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 839 GTCTTCGAAACTGGTGGAGAGTTCAGACGGGTGGAGAACCGCTTCTGTGACGGGTTGGTT 898
Query 900 CAGCAGCGGTATGGTTCATCGGGTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTA 959
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGCAGCGGTATGGTTCATCGGTTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTA 958
Query 960 TTTAAACCATATTGTTGGATTTGGGTCTAAAAAGAAACACGTACTTGTAGAAGCTGTGTT 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 959 TTTAAACCACATTGTTGGATTTGGGTCTAAAAAGAAACACGTACTTGTAGAGGCTGTGTT 1018
Query 1020 TTAGAG-TCTTCTTAGTTATAAATCGCTTCTTAAATTGTG--CTAATGATCTCGGTATGA 1076
|||||| | | ||||||| |||||| |||||||||||||| ||||||||||| |||||
Sbjct 1019 TTAGAGATGT-CTTAGTTCTAAATCTCTTCTTAAATTGTGTGCTAATGATCTCTATATGA 1077
Query 1077 TTCTATTGAGATCTGATGTAAAACttttt 1105
|||||||||||||||||||||||||||||
Sbjct 1078 TTCTATTGAGATCTGATGTAAAACTTTTT 1106
> Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439
Length=996
Score = 998 bits (540), Expect = 0.0
Identities = 855/1005 (85%), Gaps = 30/1005 (3%)
Strand=Plus/Plus
Query 40 ATGTCTCCCTCGTTTTGCTCCGGCCGATGCACCG-C-CGCGC-TCTTCCTCGTTATCTCC 96
||||| || |||| ||||||||| |||| ||| | | | | |||||||| || |||||
Sbjct 1 ATGTCGCCGTCGTGCTGCTCCGGCAAATGCTCCGTCGCTCTCTTCTTCCTCATTCTCTCC 60
Query 97 GCCGTTCCAATAGCTTACCTCATCTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTC 156
||||||||||| ||||| || ||||||||||||| ||| |||||||| || |||||| ||
Sbjct 61 GCCGTTCCAATTGCTTATCTTATCTCCTTAGAGCGAGCTGTTCCTTCCACGCACGTCATC 120
Query 157 TCTTACCAAAGCTCCGGCTTCTTCCGAGAGTGCGCCAAGTGGGACGATGTTGGTCGGAGA 216
|||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||
Sbjct 121 TCTTACCACAGCTCCGGCTTCCTCCGCGAGTGCGCCAAATGGGACGACGTTGGTCGGAGA 180
Query 217 TTCCTTGTCTCCTTCATGGACGGTGGCGG-AG--TCGGCGAGATTGTT-C--CTAAAGAC 270
||||| || |||| ||||||||| ||||| | |||||||| || || | ||||| |
Sbjct 181 TTCCTCGTTTCCTACATGGACGGCGGCGGCGGTATCGGCGAGCTTTTTCCTACTAAATAT 240
Query 271 TCCGACGACGTTCTTGAAGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACGCT 330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TCCGACGACGTTCTTGAGGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACTCT 300
Query 331 TCCCTA-GGAATCG-CTATCGACCACGTCAGAAACCGTCTCCTTGTCGCCGTCGCCGACT 388
||| | ||| ||| | ||||||| | | ||||||||||||| |||| |||| ||| |
Sbjct 301 TCCA-ACGGATTCGTC-ATCGACCGCCACCGAAACCGTCTCCTCCTCGCTGTCGGCGATT 358
Query 389 TGCTTGGAAATCGTTATAGTGCTTTAGCTG-CTTATGATTTGTCCACGTGGCGTCGTCTC 447
|| |||||||||| || |||||||||| || | |||||||||||||||||||||||||||
Sbjct 359 TGATTGGAAATCGCTACAGTGCTTTAG-TGGCCTATGATTTGTCCACGTGGCGTCGTCTC 417
Query 448 TTCCTCGCCGAACTTAGTGGTCAGAGTAAAGAGAAAACATTTGCAGACGATGTAGCTGTA 507
|||||| | | ||||| | || |||||||||| | ||| ||||||||| ||||||||
Sbjct 418 TTCCTCACAGTGCTTAGCAGCCATAGTAAAGAGATATCATATGCAGACGACGTAGCTGTT 477
Query 508 GATGAACAAGGCAATGCTTATGTGA-CTGATGCAAAAGCTAG-TAAAATATGGAAAGTTG 565
|||| |||||||| ||||||||| | |||||||||||| || ||||||||||| ||||
Sbjct 478 GATGCACAAGGCAGTGCTTATGT-ATCTGATGCAAAAGG-AGGTAAAATATGGATTGTTG 535
Query 566 ATGTTAATGGGAAGCTTGTGAACACTATTACAAGTCCTCTCTTTACACCACCTGGATGGT 625
|||| ||||| ||||||||| |||| |||| ||| |||||||| || |||||| | ||||
Sbjct 536 ATGTGAATGGAAAGCTTGTGTACACCATTAGAAGCCCTCTCTTCACTCCACCTCGTTGGT 595
Query 626 ACAATAACCTTGT-TGCTCTTAACGGCATTGTTTATCACCCCGACGGCTTTCTTATCGTT 684
| |||||| |||| | ||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 596 ATAATAACTTTGTCT-CTCTTAACGGCATTGTTTATCACCCGGACGGATTCCTTATCGTC 654
Query 685 ATCCATACTTTCTCTGGTTACTTATACAAAATTGAC-TTAACCAATGGGGATGTTAGTAA 743
||||| |||||||| |||| ||||| |||||| || ||| ||||||||||| ||||||
Sbjct 655 ATCCACACTTTCTCCGGTTTCTTATTCAAAATCGATGTTA-CCAATGGGGATATTAGTAG 713
Query 744 TCAAGTTAGTGTCATTGATGTTTCTGGTGG-TACATTGAGGTTTGGAGATGGGCTTGAGT 802
| |||| | | ||||||| ||||||||||| | | ||||||||||| |||||||||||||
Sbjct 714 TAAAGTCACTCTCATTGACGTTTCTGGTGGCT-CTTTGAGGTTTGGTGATGGGCTTGAGT 772
Query 803 TGTT---GTCTCCAACCAAGATTGTTGTTGCAGGTAGCTCGTCTACAAAACTGGTTGAGA 859
| || |||||| |||||||||||||||||||||||| ||||| | |||||||| ||||
Sbjct 773 TCTTCTTGTCTCCCACCAAGATTGTTGTTGCAGGTAGCCCGTCTTCGAAACTGGTGGAGA 832
Query 860 GTTCAGATGGGTGGAGAACCGCTTCGGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATC 919
||||||| |||||| | || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 833 GTTCAGACGGGTGGCGGACGGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATC 892
Query 920 GGGTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTAT-TTAAACCATATTGTTGGA 978
|| ||||||||||||| || || || ||||||||||||||| |||| ||| ||||||||
Sbjct 893 GGTTAGTCTCGTCGGCCACTGTTAAAGAAGGAAGAGTTTATCTTAA-CCACATTGTTGGG 951
Query 979 TTTGGGTCTAAAAAGAAACACGTACTTGTAGAAGCTGTGTTTTAG 1023
||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 952 TTTGGGTCTAAGAAGAGACACATACTTGTAGAAGCTGTGTTTTAG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5