BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16760.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1 1709 0.0 Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439 998 0.0 > Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1 Length=1107 Score = 1709 bits (925), Expect = 0.0 Identities = 1049/1109 (95%), Gaps = 7/1109 (1%) Strand=Plus/Plus Query 1 ATTTCTCTCTACCCGTTTTTTCTCTTATTTCaaaaaaaaaTGTCTCCC-TCGTTTTGCTC 59 ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 1 ATTTCTCTCTACCCGTTTTTTCTCTTATTTC-AAAAAAAATGTC-CCCGTCGTTTTGCTC 58 Query 60 CGGCCGATGCACCGCCGCGCTCTTCCTCGTTATCTCCGCCGTTCCAATAGCTTACCTCAT 119 |||| ||||| |||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 59 CGGCAGATGCTCCGCTGCTCTCTTCCTCGTAATCTCCGCCGTTCCAATAGCTTACCTCAT 118 Query 120 CTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTCTCTTACCAAAGCTCCGGCTTCTT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 119 CTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTCTCTTACCAAAGCTCTGGCTTCTT 178 Query 180 CCGAGAGTGCGCCAAGTGGGACGATGTTGGTCGGAGATTCCTTGTCTCCTTCATGGACGG 239 ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 179 CCGCGAGTGCGCCAAATGGGACGATGTTGGTCGGAGATTCCTCGTCTCCTTCATGGACGG 238 Query 240 TGGCGGAGTCGGCGAGATTGTTCCTAAAGACTCCGACGACGTTCTTGAAGAAGTCACTTT 299 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 239 TGGCGGAGTCGGCGAGATTGTTCCTAAAGATTCCGACGACGTTCTTGAAGAAGTCACTTT 298 Query 300 GGTCAAAGACGTTGACCTCGCCGGTAACGCTTCCCTAGGAATCGCTATCGACCACGTCAG 359 ||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || Sbjct 299 GGTCAAAGATGTTGACCTCGCCGGTAACGCTTCCCTAGGAATCGTTATCGACCGTGTTAG 358 Query 360 AAACCGTCTCCTTGTCGCCGTCGCCGACTTGCTTGGAAATCGTTATAGTGCTTTAGCTGC 419 ||||||||||| || ||||||||||||||||||||||| || |||||||||||||| || Sbjct 359 GAACCGTCTCCTCGTAGCCGTCGCCGACTTGCTTGGAAACCGGTATAGTGCTTTAGCAGC 418 Query 420 TTATGATTTGTCCACGTGGCGTCGTCTCTTCCTCGCCGAACTTAGTGGTCAGAGTAAAGA 479 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 419 CTATGATTTGTCCACGTGGCGTCGTCTCTTCCTCGCCGAGCTTAGTGGTCATAGTAACGA 478 Query 480 GAAAACATTTGCAGACGATGTAGCTGTAGATGAACAAGGCAATGCTTATGTGACTGATGC 539 |||||| |||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 479 GAAAACGTTTGCAGACGATGTTGCCGTTGATGAACAAGGCAATGCTTATGTGACTGATGC 538 Query 540 AAAAGCTAGTAAAATATGGAAAGTTGATGTTAATGGGAAGCTTGTGAACACTATTACAAG 599 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 539 AAAAGCTAGTAAAATTTGGAAAGTTGATGTTAATGGAAAGCTTGTGAACACTATTACAAG 598 Query 600 TCCTCTCTTTACACCACCTGGATGGTACAATAACCTTGTTGCTCTTAACGGCATTGTTTA 659 | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 599 TTCTCTCTTTACTCCACCTGGATGGTACAATAACCTTGTTGCTCTAAACGGCATTGTTTA 658 Query 660 TCACCCCGACGGCTTTCTTATCGTTATCCATACTTTCTCTGGTTACTTATACAAAATTGA 719 ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 659 TCACCCCGACGGCTTCCTTATCGTTATTCACACTTTCTCTGGTTACTTATACAAAATTGA 718 Query 720 CTTAACCAATGGGGATGTTAGTAATCAAGTTAGTGTCATTGATGTTTCTGGTGGTACATT 779 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 719 CTTAACCAATGGGGATGTTAGTAATCAAGTTACTGTAATTGATGTTTCTGGTGGTACATT 778 Query 780 GAGGTTTGGAGATGGGCTTGAGTTGTTGTCTCCAACCAAGATTGTTGTTGCAGGTAGCTC 839 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 779 GAGGTTTGGAGATGGGCTTGAGTTGTTGTCTCCAACCAAAATTGTTGTTGCAGGTAGCTC 838 Query 840 GTCTACAAAACTGGTTGAGAGTTCAGATGGGTGGAGAACCGCTTCGGTGACGGGTTGGTT 899 |||| | |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 839 GTCTTCGAAACTGGTGGAGAGTTCAGACGGGTGGAGAACCGCTTCTGTGACGGGTTGGTT 898 Query 900 CAGCAGCGGTATGGTTCATCGGGTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTA 959 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 899 CAGCAGCGGTATGGTTCATCGGTTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTA 958 Query 960 TTTAAACCATATTGTTGGATTTGGGTCTAAAAAGAAACACGTACTTGTAGAAGCTGTGTT 1019 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 959 TTTAAACCACATTGTTGGATTTGGGTCTAAAAAGAAACACGTACTTGTAGAGGCTGTGTT 1018 Query 1020 TTAGAG-TCTTCTTAGTTATAAATCGCTTCTTAAATTGTG--CTAATGATCTCGGTATGA 1076 |||||| | | ||||||| |||||| |||||||||||||| ||||||||||| ||||| Sbjct 1019 TTAGAGATGT-CTTAGTTCTAAATCTCTTCTTAAATTGTGTGCTAATGATCTCTATATGA 1077 Query 1077 TTCTATTGAGATCTGATGTAAAACttttt 1105 ||||||||||||||||||||||||||||| Sbjct 1078 TTCTATTGAGATCTGATGTAAAACTTTTT 1106 > Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439 Length=996 Score = 998 bits (540), Expect = 0.0 Identities = 855/1005 (85%), Gaps = 30/1005 (3%) Strand=Plus/Plus Query 40 ATGTCTCCCTCGTTTTGCTCCGGCCGATGCACCG-C-CGCGC-TCTTCCTCGTTATCTCC 96 ||||| || |||| ||||||||| |||| ||| | | | | |||||||| || ||||| Sbjct 1 ATGTCGCCGTCGTGCTGCTCCGGCAAATGCTCCGTCGCTCTCTTCTTCCTCATTCTCTCC 60 Query 97 GCCGTTCCAATAGCTTACCTCATCTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTC 156 ||||||||||| ||||| || ||||||||||||| ||| |||||||| || |||||| || Sbjct 61 GCCGTTCCAATTGCTTATCTTATCTCCTTAGAGCGAGCTGTTCCTTCCACGCACGTCATC 120 Query 157 TCTTACCAAAGCTCCGGCTTCTTCCGAGAGTGCGCCAAGTGGGACGATGTTGGTCGGAGA 216 |||||||| |||||||||||| |||| ||||||||||| |||||||| |||||||||||| Sbjct 121 TCTTACCACAGCTCCGGCTTCCTCCGCGAGTGCGCCAAATGGGACGACGTTGGTCGGAGA 180 Query 217 TTCCTTGTCTCCTTCATGGACGGTGGCGG-AG--TCGGCGAGATTGTT-C--CTAAAGAC 270 ||||| || |||| ||||||||| ||||| | |||||||| || || | ||||| | Sbjct 181 TTCCTCGTTTCCTACATGGACGGCGGCGGCGGTATCGGCGAGCTTTTTCCTACTAAATAT 240 Query 271 TCCGACGACGTTCTTGAAGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACGCT 330 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 241 TCCGACGACGTTCTTGAGGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACTCT 300 Query 331 TCCCTA-GGAATCG-CTATCGACCACGTCAGAAACCGTCTCCTTGTCGCCGTCGCCGACT 388 ||| | ||| ||| | ||||||| | | ||||||||||||| |||| |||| ||| | Sbjct 301 TCCA-ACGGATTCGTC-ATCGACCGCCACCGAAACCGTCTCCTCCTCGCTGTCGGCGATT 358 Query 389 TGCTTGGAAATCGTTATAGTGCTTTAGCTG-CTTATGATTTGTCCACGTGGCGTCGTCTC 447 || |||||||||| || |||||||||| || | ||||||||||||||||||||||||||| Sbjct 359 TGATTGGAAATCGCTACAGTGCTTTAG-TGGCCTATGATTTGTCCACGTGGCGTCGTCTC 417 Query 448 TTCCTCGCCGAACTTAGTGGTCAGAGTAAAGAGAAAACATTTGCAGACGATGTAGCTGTA 507 |||||| | | ||||| | || |||||||||| | ||| ||||||||| |||||||| Sbjct 418 TTCCTCACAGTGCTTAGCAGCCATAGTAAAGAGATATCATATGCAGACGACGTAGCTGTT 477 Query 508 GATGAACAAGGCAATGCTTATGTGA-CTGATGCAAAAGCTAG-TAAAATATGGAAAGTTG 565 |||| |||||||| ||||||||| | |||||||||||| || ||||||||||| |||| Sbjct 478 GATGCACAAGGCAGTGCTTATGT-ATCTGATGCAAAAGG-AGGTAAAATATGGATTGTTG 535 Query 566 ATGTTAATGGGAAGCTTGTGAACACTATTACAAGTCCTCTCTTTACACCACCTGGATGGT 625 |||| ||||| ||||||||| |||| |||| ||| |||||||| || |||||| | |||| Sbjct 536 ATGTGAATGGAAAGCTTGTGTACACCATTAGAAGCCCTCTCTTCACTCCACCTCGTTGGT 595 Query 626 ACAATAACCTTGT-TGCTCTTAACGGCATTGTTTATCACCCCGACGGCTTTCTTATCGTT 684 | |||||| |||| | ||||||||||||||||||||||||| ||||| || |||||||| Sbjct 596 ATAATAACTTTGTCT-CTCTTAACGGCATTGTTTATCACCCGGACGGATTCCTTATCGTC 654 Query 685 ATCCATACTTTCTCTGGTTACTTATACAAAATTGAC-TTAACCAATGGGGATGTTAGTAA 743 ||||| |||||||| |||| ||||| |||||| || ||| ||||||||||| |||||| Sbjct 655 ATCCACACTTTCTCCGGTTTCTTATTCAAAATCGATGTTA-CCAATGGGGATATTAGTAG 713 Query 744 TCAAGTTAGTGTCATTGATGTTTCTGGTGG-TACATTGAGGTTTGGAGATGGGCTTGAGT 802 | |||| | | ||||||| ||||||||||| | | ||||||||||| ||||||||||||| Sbjct 714 TAAAGTCACTCTCATTGACGTTTCTGGTGGCT-CTTTGAGGTTTGGTGATGGGCTTGAGT 772 Query 803 TGTT---GTCTCCAACCAAGATTGTTGTTGCAGGTAGCTCGTCTACAAAACTGGTTGAGA 859 | || |||||| |||||||||||||||||||||||| ||||| | |||||||| |||| Sbjct 773 TCTTCTTGTCTCCCACCAAGATTGTTGTTGCAGGTAGCCCGTCTTCGAAACTGGTGGAGA 832 Query 860 GTTCAGATGGGTGGAGAACCGCTTCGGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATC 919 ||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||| Sbjct 833 GTTCAGACGGGTGGCGGACGGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATC 892 Query 920 GGGTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTAT-TTAAACCATATTGTTGGA 978 || ||||||||||||| || || || ||||||||||||||| |||| ||| |||||||| Sbjct 893 GGTTAGTCTCGTCGGCCACTGTTAAAGAAGGAAGAGTTTATCTTAA-CCACATTGTTGGG 951 Query 979 TTTGGGTCTAAAAAGAAACACGTACTTGTAGAAGCTGTGTTTTAG 1023 ||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct 952 TTTGGGTCTAAGAAGAGACACATACTTGTAGAAGCTGTGTTTTAG 996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5