BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16770.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931513 jgi|Araly1|931513|scaffold_303970.1 1208 0.0
> Ahg931513 jgi|Araly1|931513|scaffold_303970.1
Length=808
Score = 1208 bits (654), Expect = 0.0
Identities = 757/804 (94%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 319 TACTGGGTTTTGAGTAATGGACGACGGTGAGCTTGAGTTTTCGAATTCAAACATGGGTGG 378
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5 TACTGGGTTTTTAGTAATGGACGACGGTGAGCTTGAGTTTTCGAATTCGAACATGGGTGG 64
Query 379 TGAATT---ACC---TAGCTGTTCGATGGATTCGTTCTTCGATGAGCTTTTGAGAGATTC 432
||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 65 TGAGTTACCACCTAGTAGCTGTTCGATGGATTCGTTCTTCGATGAGCTTTTGAGGGATTC 124
Query 433 TCATGCTTGTACTCATACTCACACTTGTAATCCTCCGGGACCAGAGAACACACATACTCA 492
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 125 TGGTGCTTGTACTCATACTCATACTTGTAATCCTCCGGGACCAGAGAACACACATACTCA 184
Query 493 CACATGTCTCCATGTGCACACCAAGATTCTTCC-T----GA-C------AAAGTTTCTAC 540
||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 185 CACATGTCTCCATGTGCACACCAAGATTCTTCCTTCACAGAGCGAGGATAAAGTTTCTAC 244
Query 541 TGATGATACATCGGAATCTTCAGGGAAGAAGAGACCTTTAGGGAATAGAGAAGCGGTTAG 600
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 245 CGATGATACATCGGAATCTTCAGGGAAGAAGAGACCTTTGGGGAACAGAGAAGCGGTTAG 304
Query 601 AAAGTATAGGGAGAAGAAGAAGGCTAAAGCGGCTTCGTTGGAGGATGAGGTTATGAGGCT 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 GAAGTATAGGGAGAAGAAGAAGGCTAAAGCGGCTTCGTTGGAGGACGAGGTTATGAGGCT 364
Query 661 TAAGGCGGTTAATAATCAGCTGTTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAAGCTGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TAAGGCGGTTAATAATCAGCTGTTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAAGCTGA 424
Query 721 GGTTACTAGGCTCAAGTGTTTGCTTGTTGATATAAGAGGAAGAATTGATGGAGAGATTGG 780
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 425 GGTTACAAGGCTCAAGTGTTTGCTTGTTGATATAAGAGGAAGAATTGATGGAGGGATTGG 484
Query 781 TGCGTTTCCTTATCAGAAACCTGCGGTTACAAACGTGCCTTACTCATACATGATGCATCC 840
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 485 TGCATTTCCTTATCAGAAGCCTGCGGTTACAAATGTGCCTTACTCATACATGATGCATCC 544
Query 841 TTGCAATATGCAATGTGATGTTGATAACTTGTACTGCCTTCAAAATGGGAATAATGGAGA 900
||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 545 TTGCAATATGCAATGCGATGTTGATAACTTGTACTGCCTGCAAAATGGGAACAACGGAGA 604
Query 901 AGGTGCATCGATGAATGAGCAAGGGCTAAATGGTTGTGAGTTTGATCAGCTAGAATGCTT 960
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGGTGGATCGATGAATGATCAAGGGCTAAATGGTTGTGAGTTTGATCAGCTAGAATGCTT 664
Query 961 GGCTAATCAGAATTTAGCTGGCAAGGAGATCCCTGTTTGTAGTAATGGAATTGGAACATT 1020
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 665 TGCTAATCAGAATTTAGCTGGCAAGGAGATCCCTGTCTGTAGTAATGGAATTGGAACATT 724
Query 1021 CACTGTCAATGGATCCGGCGTTAATAAGAGAAAAGGTGAGCCTCGAGCAGCGAAAGCAGT 1080
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 725 CACTGTCAATGGATCCGGCGCTAATAAGAGAAAAGGTGGGCCTCGTGCAGCGAAAGCAGT 784
Query 1081 TTGAAGTATCATCAATCATGTGAT 1104
||||||||||||| ||||||||||
Sbjct 785 TTGAAGTATCATCGATCATGTGAT 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5