BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16780.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480561 jgi|Araly1|480561|fgenesh2_kg.3__3262__AT2G16780.1 2313 0.0
Ahg944393 jgi|Araly1|944393|scaffold_700622.1 1242 0.0
> Ahg480561 jgi|Araly1|480561|fgenesh2_kg.3__3262__AT2G16780.1
Length=1435
Score = 2313 bits (1252), Expect = 0.0
Identities = 1378/1439 (96%), Gaps = 7/1439 (0%)
Strand=Plus/Plus
Query 29 gagagagagaagtagattgagaggcgagagagaTAATGGCAGATGAAGGTAAGGAGGAGA 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAAGTAGATTGAGAGGCGAGAGAGATAATGGCAGATGAAGGTAAGGAGGAGA 60
Query 89 CAGGAATGGGTCAGGTCGAGGAAGATTTTTCTGTGTGGAAGAAGAACACACCATTTCTCT 148
| ||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 CGGGAATGGATCAAGTGGAGGAAGATTTCTCAGTGTGGAAGAAGAACACACCATTTCTCT 120
Query 149 ACGATCTTTTGATCTCTCACCCACTCGAATGGCCATCTCTCACCGTCCATTGGGTTCCAT 208
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 ACGATCTTTTGATCTCTCACCCACTCGAATGGCCGTCTCTCACAGTCCATTGGGTTCCAT 180
Query 209 CGACGCCAAATCCTTACGTAGCAGACTCTTACTTCGGTGTCCACAAGCTTATACTCGGTA 268
||||||| |||||||||| || ||| |||||||||| |||||||||||||||||||| |
Sbjct 181 CGACGCCTAATCCTTACGCGGCGGACCCTTACTTCGGCGTCCACAAGCTTATACTCGGGA 240
Query 269 CTCATACTTCCGGTAGTGCTCAAGATTTTCTCATGGTCGCCGACGTCGTTACCCCGACAC 328
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 CTCATACTTCCGGTAGTGCTCAAGATTTCCTCATGGTCGCCGACGTCGTTACCCCGACAC 300
Query 329 CAAACGCAGAACCTGGGATAGGCGGCGCTAATCAGGATCCCT-TTATTCCTAAGGTGGAG 387
|||||| ||||||||| |||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 301 CAAACGGTGAACCTGGGTTAGGCGGCCCTAATCAGGAT-CCTATTATTCCTAAGGTGGAG 359
Query 388 ATTAGGCAGAGGATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGTATGCCTCAAAAG 447
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 ATTAGTCAGAAAATACGTGTTGATGGAGAAGTGAACAGAGCGCGGTGCATGCCTCAAAAG 419
Query 448 CCGACGCTTGTGGGTGCAAAGACGAGTGGGTGTGAGGTGTTTCTGTTTGATTACGCCAAA 507
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 CCGACGCTTGTGGGTGCAAAGACAAGTGGGTGTGAGGTGTTTCTGTTTGATTACGCCAAA 479
Query 508 CATGCTGCAAAGTCTCAAACGAGTGAGTGTGATCCTGATCTGAGGCTAGTGGGACATGAC 567
|||||||||| | | ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 480 CATGCTGCAACGCCAAAAACGAGTGAGTGTGATCCTGATCTGAGGTTAGTAGGACATGAC 539
Query 568 AAGGAAGGGTATGGATTGTCTTGGAGTCCTTTCAAGGAAGGTTATCTTTTGAGTGGTTCA 627
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 540 AAGGAAGGGTATGGACTGTCTTGGAGTCCTTTCAAGGAGGGTTATCTTCTGAGTGGTTCA 599
Query 628 CAGGATCAGAAGATCTGTCTTTGGGATGTTTCAGCTACACCGCAAGATAAGGTTTTGAAT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAGGATCAGAAGATCTGTCTTTGGGATGTTTCAGCTACACCGCAAGATAAGGTTTTGAAT 659
Query 688 GCAATGTTTGTGTATGAGGGACATGAAAGTGCTATCGCAGATGTGTCATGGCACATGAAG 747
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GCAATGTTTGTGTATGAGGGACATGAAAGTGCTATCGCAGATGTATCATGGCACATGAAG 719
Query 748 AATGAGAACCTTTTTGGTTCTGCGGGTGAGGATGGCCGATTGGTGATATGGGACACACGG 807
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACGAGAACCTCTTTGGGTCTGCGGGTGAGGATGGCCGATTGGTGATATGGGACACACGG 779
Query 808 ACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACAAACCAAATGCAACACCAAGTGAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTC 839
Query 868 AATCCGTTCAACGAATGGGTATTGGCCACAGCTTCCTCAGACTCCACTGTTGCTTTGTTT 927
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 840 AATCTGTTTAACGAATGGGTATTGGCCACTGCTTCCTCAGACTCCACTGTTGCCTTGTTT 899
Query 928 GACCTCCGGAAACTTAATGCGCCATTGCATGTCATGAGCAGCCATGAGGGAGAGGTCTTC 987
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 900 GACCTCCGGAAGCTTAATGCGCCATTACATGTCATGAGCAGCCATGAGGGAGAGGTTTTC 959
Query 988 CAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAAGTGGAGTGGGATCCTAACCATGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGG 1019
Query 1048 CTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCA 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTGATGGTCTGGGACCTGAACAGGGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCA 1079
Query 1108 GAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGAC 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGATGGTCCACCAGAGTTACTCTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGAC 1139
Query 1168 TTTGCTTGGAACAAAAACGAGCCTTGGGTCATTGCAAGTGTAGCTGAAGACAACAGTCTT 1227
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 TTTGCTTGGAACGAAAACGAGCCTTGGGTCATTGCAAGTGTAGCCGAAGACAACAGTCTT 1199
Query 1228 CAGGTGTGGCAGATGGCAGAAAGCATCTATCGCGATGAAGAGGATGCCGAGGACATCAAA 1287
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1200 CAGGTGTGGCAGATGGCGGAAAGCATCTATCGCGATGAAGATGATGCTGAGGACATCAAA 1259
Query 1288 GAAGATATTACACAACAATCATGAAAATTAAGAAACGATTTGGTCTCTCCATTACTTAAA 1347
||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 GAAGATAGTACACAACAGTCATGAAAATTAAGAAATGATTTGGTCTCTCCATTACTTAA- 1318
Query 1348 GTGTCTTATCTTGCTTTAGCCAGTTTCTGAAAGACAAGCTTTGCGTCTGTATTAGGATTA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 GTGTCTTATCTTGCTTTAGCCAGTTTCTGAAAGACAAGCTTTGCGTCTGTATTAGGACTA 1378
Query 1408 ACATGAATCA-TCTCTGTTTGTTAATGTAACCATGTT-GGATTTTGTTGGTTTCCTATC 1464
|||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 ACATGA-TCAGT-TCTGTTTGTTAATGTAACCATGTTTGGATTTTGTTGGTTTCCTATC 1435
> Ahg944393 jgi|Araly1|944393|scaffold_700622.1
Length=1258
Score = 1242 bits (672), Expect = 0.0
Identities = 1038/1213 (86%), Gaps = 32/1213 (3%)
Strand=Plus/Plus
Query 66 GGCAGATGAAGGTAAGGAGGAGACAGGAATGGGTCAGGTCGAGGAAGATTTTTCTGTGTG 125
||| || || ||||| || ||| ||||| ||| |||||| |||||||| || ||||| ||
Sbjct 26 GGCGGAAGAGGGTAAAGATGAGCCAGGATTGGATCAGGTGGAGGAAGAGTTCTCTGTTTG 85
Query 126 GAAGAA-GAACACACCATTTCTCTACGATCTTTTGATCTCTCACCCACTCGAATGGCCAT 184
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 86 GAA-AAGGAACACACCATTTCTCTACGATCTTATGATCTCTCACCCACTCGAATGGCCAT 144
Query 185 CTCTCAC-CGTCCATTGGGTTCCATCGACGCCAAATCCTTACGTAG-CAGACT-CTTACT 241
|||| || | |||||||||| || |||||||| | ||| |||| | ||| | ||||||
Sbjct 145 CTCTAACTC-TCCATTGGGTCCCTTCGACGCCGATTCCGTACG-CGAAAGA-TCCTTACT 201
Query 242 TCGGTGTCCACAAGCTTATACTCGGTACTCATACTTCCGGTAGTGCTCAAGATTTTCTCA 301
||| || || |||||||| || || |||||||| |||||| |||| || |||||||| |
Sbjct 202 TCGCCGTTCATAAGCTTATCCTAGGGACTCATACCTCCGGTGGTGCCCAGGATTTTCTAA 261
Query 302 TGGTCGCCGACGTCGTTACCCCGACACCAAACGCAGAACCTGGGATAGGCGGCGCTA-AT 360
|||||||||| ||||||| |||||||| |||| ||||| ||| |||| || | ||
Sbjct 262 TGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGGTTAGGTGG-AAGAGAT 320
Query 361 CAGGATCCCT-TTATTCCTAAGGTGGAGATTAGGCAGAGGATACGTGTTGATGGAGAAGT 419
||||| ||| | | |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 321 CAGGA-ACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATGGAGAAGT 379
Query 420 GAACAGAGCGCGGTGTATGCCTCAAAAGCCGACGCTTGTGGGTGC-AAAGACGAGTGGGT 478
|||||||||||||||||||||||||||||| || ||||||||||| ||| || ||||| |
Sbjct 380 GAACAGAGCGCGGTGTATGCCTCAAAAGCCAACTCTTGTGGGTGCTAAA-ACAAGTGGCT 438
Query 479 GTGAGGTGTTTCTGTTTGATTACGCCAAACA-TGCTGCAAAGTCTCAAACGAGTGAGTGT 537
|||||||||| | ||||||||||||| || | ||| |||| | ||||| |||||||||
Sbjct 439 CTGAGGTGTTTTTATTTGATTACGCCAGACTCT-CTGGAAAGCCCCAAACTAGTGAGTGT 497
Query 538 GATCCTGATCTGAGGCTAGTGGGACATGA-CAAGGAAGGGTATGGATTGTCTTGGAG-TC 595
|||||||||||||||||| |||||||||| |||| |||| ||||||||| ||||||| ||
Sbjct 498 GATCCTGATCTGAGGCTAATGGGACATGAACAAG-AAGGTTATGGATTGGCTTGGAGCTC 556
Query 596 CTTTCAAGGAAGGTTATCTTTTGAGTGGTTCACAGGATCAGAAGA-TCTGTCTTTGGGAT 654
|||| ||||| ||||||||||||||||| ||||||||||||| || |||| |||||||||
Sbjct 557 CTTT-AAGGAGGGTTATCTTTTGAGTGGGTCACAGGATCAGA-GAATCTGCCTTTGGGAT 614
Query 655 GTTTCAGCTACACCGCAA-GATAAGGTTTTGAATGCAATGTTTGTGTATGAGGGACATGA 713
||||||||||| | || ||||||||||||||| ||||| |||||||||||||||| |
Sbjct 615 GTTTCAGCTACTGC-CAGTGATAAGGTTTTGAATCCAATGCATGTGTATGAGGGACATCA 673
Query 714 AAG--TGCTATCGCAGATGT-GTCATGGCACATGAAGAATGAGAACCTTTTTGGTTCTGC 770
||| | | || | |||||| | |||||||||||||||||||||| | || || |||||
Sbjct 674 AAGCAT-C-ATTGAAGATGTAG-CATGGCACATGAAGAATGAGAATATATTCGGGTCTGC 730
Query 771 GGGTGAGGATGGCCGATTGGTGATATGGGACACACGGACAAACCAAATGCAACACCAAGT 830
|||||| ||| | | |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 731 GGGTGATGATTGTCAATTGGTTATATGGGACTTACGGACAAACCAAATGCAACACCAAGT 790
Query 831 GAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTCAATCCGTTCAACGAATGGGTATT 890
|||||||||||||||||| | |||||||| ||||||||||| || || ||||||||| |
Sbjct 791 CAAAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCATTTAATGAATGGGTACT 850
Query 891 GGCCACAGCTTCCTCAGACTCCACTGTTGCTTTGTTTGACCTCCGGAAACTTAATGCGCC 950
|||||||||||||||||||| ||||| || ||||||||||| || || || | ||||||
Sbjct 851 AGCCACAGCTTCCTCAGACTCGACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCC 910
Query 951 ATTGCATGTCATGAGCAGCCATGAGGGAGAGGTCTTCCAAGTGGAGTGGGATCCTAACCA 1010
||| |||||| ||||||| || |||||||| || |||||||||||||||||||| |||||
Sbjct 911 ATTACATGTCCTGAGCAGACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCGAACCA 970
Query 1011 TGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGGCTGATGGTCTGGGACCTGAACAG 1070
||||||||| || |||||||| || ||||||||||| || ||||||||||| | || ||
Sbjct 971 TGAAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAATAG 1030
Query 1071 GGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCAGAAGATGGTCCACCAGAGTTACT 1130
||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct 1031 GGTCGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCT 1090
Query 1131 CTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGACTTTGCTTGGAACAAAAACGAGCC 1190
||||||||| ||||| |||||||| || |||||||||||||| |||||||| |||||||
Sbjct 1091 CTTCTCTCATGGAGGTCACAAGGCCAAAATATCAGACTTTGCCTGGAACAAGGACGAGCC 1150
Query 1191 TTGGGTCAT-TGCAAGTGTAGCTGAAGACAACAGTCTTCAGGTGTGGCAGATGGCAGAAA 1249
||||||||| | |||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1151 TTGGGTCATCT-CAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCAGAAA 1209
Query 1250 GCATCTATCGCGA 1262
||||||| |||||
Sbjct 1210 GCATCTACCGCGA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5