BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16790.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906495 jgi|Araly1|906495|Al_scaffold_0003_3623 917 0.0
> Ahg906495 jgi|Araly1|906495|Al_scaffold_0003_3623
Length=576
Score = 917 bits (496), Expect = 0.0
Identities = 540/562 (96%), Gaps = 0/562 (0%)
Strand=Plus/Plus
Query 102 ATGTCGGCTAAAAATGACGTGACAGGTAAAGTCATTGCGATTATGGGCGTAAGTGGCGCA 161
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1 ATGTAGGCTAACAATGACGTGACAGGTAAAGTCATTGTGATTATGGGCGTAAGCGGAGCA 60
Query 162 GGGAAATCTACCATAGGTAAAATGTTGGGGAAAGCTCTATCTTGCGATTTTCTTGATGCT 221
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGGAAATCTACCATAGGTAAACTGTTGGGGAAAGCTCTATCTTGTGATTTTCTTGATGCT 120
Query 222 GATGATTTTCATTCTTTATCAAACAGAGATAAGATGCGTCAAGGCATTGCTCTTTCAGAT 281
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGATTTTCATTCTTTATCGAACAGAGATAAGATGCGTCAAGGCATTGCTCTTTCAGAC 180
Query 282 GAAGACCGAATGCCATGGCTTGAAAAAATACAAGAGAGTTTGCGAAAACGTTTACTCGAT 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGACCGAATGCCATGGCTTGAAAAAATACAAGAGAGTTTGCGAAAACGTTTACTCGAT 240
Query 342 GGAGAAACCGTTGTTCTCGCATGTTCTTCTTTGAGAAAACAGTATAGAGAAATCTTGAGA 401
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGAGAAACCGTTGTTCTCGCATGTTCTTCATTGAGAAAACAGTATAGAGAAATCTTGAGA 300
Query 402 GGTTCTGATCCTGATTACAAACCGGGAAGCTATACGAGTTGCAAGGTTACGTTTGTTTTA 461
|| ||||||||||||||| ||| |||||||||| ||||||||||||||| |||||| |||
Sbjct 301 GGCTCTGATCCTGATTACGAACAGGGAAGCTATTCGAGTTGCAAGGTTAAGTTTGTATTA 360
Query 462 TTGGAAGGTAATGCAGAGGTGATTGCTGCTCGGTTACAGAAGAGAGCTTCCGAGGAAGAA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTGGAAGGTAATGCAGAGGTGATTGCTGCTCGGTTACAGAAGAGAGCTTCCGAGGGAGAA 420
Query 522 CATTTCATGCCTCTTACTCTTCTTCAGTCTCAGTTTGATCTGCTTCAAGCTGATGAATGT 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATTTCATGCCTCTTACTCTTCTTCAGTCTCAGTTTGATCTGCTTCAAGCTGATGAATGC 480
Query 582 GAAAAGATATTCAAAATCAGTGTGGTTCTAAGCCCTGAAGTTATAGTCAATACAATTCTT 641
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 481 GAAAAGATATTCAAAATCAGTGTGATTCTAAGCCCTGAAGTTATAGTCAGTACAATTCTT 540
Query 642 GAAATGGTAGCAAATTCTTTGA 663
|||||| ||| |||||||||||
Sbjct 541 GAAATGCTAGGAAATTCTTTGA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5