BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16800.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480562 jgi|Araly1|480562|fgenesh2_kg.3__3263__AT2G16800.1 1893 0.0
> Ahg480562 jgi|Araly1|480562|fgenesh2_kg.3__3263__AT2G16800.1
Length=1273
Score = 1893 bits (1025), Expect = 0.0
Identities = 1191/1269 (94%), Gaps = 20/1269 (2%)
Strand=Plus/Plus
Query 69 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCTCCTTCTTCTCACTCAATTG 128
|||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||
Sbjct 21 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCACCGTCTTCTCGCACAATTG 80
Query 129 CTCCCTCCAAATTC-CAATCAAGACCATCTCCCTTATTACTCCACCGTCTCCACTCAACG 187
|||| |||||| | ||||||||||||||| || |||||||||||||||||||| ||
Sbjct 81 CTCCATCCAAA-CCACAATCAAGACCATCT-CC--GTTACTCCACCGTCTCCACTCGCCG 136
Query 188 AATCTTAGTACTTTTCCCTCCTCTCGCCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 247
| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 137 AGTCTTAG---TTTTACCTCCTCTCACCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 193
Query 248 TGCTTCTTCCGTCAGAATCCATCGCCGGATACATCTCCAGGATTGAATCAGAGTAGTAAT 307
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 TGCTTCTTCCGCCAGAATCCATCGCCGGATTCATCTCCAGGATTGAATCAGAGTAGTAAT 253
Query 308 TTCTTGATTGCTTCTTCTCAAACCGATGCG-TCGAAACCTAATCCAGGATTTATCCAACG 366
||||||||| ||||| || ||||||||| | |||||||||||||||||||||||||||||
Sbjct 254 TTCTTGATTCCTTCTCCTGAAACCGATG-GATCGAAACCTAATCCAGGATTTATCCAACG 312
Query 367 GATCGTGAGCAGTTTTGAGCAACGCAAGACCATAT-CGGCAGGAATGGTTATATTAGTCT 425
||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||
Sbjct 313 GATCGTGAGCAGTTTTGAGCAGCGCAAGACCAT-TCCGGCTGGAATGGTTATATTAGTCT 371
Query 426 CTGCTATAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCCGCCTGCTTTCGCTAGCTTTC 485
| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 372 CCGCTGTAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCAGCCTGCTTTCGCTAGCTTTC 431
Query 486 AAACGGCTACTAATTCTGGTGGAGCTGCTGTGGTTGGTGGAAAACTCCTCAGGACTGAAG 545
||||||| |||||||||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 432 AAACGGCAACTAATTCTGGTGGAGCTGC--T-GTTGGTGGAAAGCTTCTCAGGACTGAAG 488
Query 546 TATTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGACCTG 605
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 489 TACTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGGCCAG 548
Query 606 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCGG 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 549 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCAG 608
Query 666 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAGCTCATCTTTGGTTTATTGTTTC 725
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 609 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAACTTATCTTTGGTTTATTGTTTC 668
Query 726 TGCTTCTAAAAGATAGGCTCCACATTGAAGTTATAAGAACTTGGGGTACAAGAGTTGTTG 785
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 669 TGCTTCTAAAAGATAGGCTTCATATTGAAGTTATAAGAACTTGGGGTACAAGAGTCGTTG 728
Query 786 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATCAAAGAAGCTTCTGAGATGCCGGAAC 845
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 729 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATTAAAGAAGCTTCTGAGATTCCGGAAC 788
Query 846 CATGTGTTGTTACTTTGGAGAATGGGGAAACAGATGAGAAAAGCTTAAAGAAGAAAAAGA 905
||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 789 CATGTGTTGTTACCTTGGAGAATGGAGAAACAGATGAGAAAAGCTCAAAGAAGAAAAAGA 848
Query 906 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCATGGCCTGCAACCGGATGCTCTGATGA 965
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 849 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCACGGACTTCAACCGGATGCTCTGATGA 908
Query 966 TGGTATTGCCTGCATTGGCTCTTCCTTCTCGGATAGCCGGTGCTTCGTTTCTCATCATGT 1025
|||||||||||||| | ||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 909 TGGTATTGCCTGCACTCGCTCTTCCTTCTCGGTTAGCTGGTGCTTCATTTCTCATCATGT 968
Query 1026 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTTTTTATTGGGTCGTGTAGCG 1085
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 969 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTGTTTATCGGGTCATGTAGCG 1028
Query 1086 AAGCGTTGAAAGAGAAAGTTCCTAGGATCACTGAGAAACTAACGTGGGCATCTTCTCTTG 1145
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1029 AAGCGTTGAAAGAGAAGGTTCCTAGGATCACAGAGAAACTAACGTGGGCATCTTCTCTTG 1088
Query 1146 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1148
Query 1206 GAAGA-AAACATCGTCAAGTCTTTGTAGCTCTCTCTGTAGGATAAGATTTTTTGCATGTA 1264
|| || |||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 1149 GA-GACAAACATCGTCAAGTCTTTGTAGCTCTCT--GTAGGATAAGATTTTT-GCCTGTA 1204
Query 1265 CCAACAAAATTTGTATCTTTGCTTCAGAATCTTTTTCTTCAATCAAATACAAGTTTGAGT 1324
||||||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||
Sbjct 1205 CCAACAAAATTTGTATCCTTGCTTCATAATCTTTTCCTTCCATCAAATAGAAGTTTGAGT 1264
Query 1325 TTGGCTCCC 1333
|||||||||
Sbjct 1265 TTGGCTCCC 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5