BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G16800.1 Length=1384 Score E Sequences producing significant alignments: (Bits) Value Ahg480562 jgi|Araly1|480562|fgenesh2_kg.3__3263__AT2G16800.1 1893 0.0 > Ahg480562 jgi|Araly1|480562|fgenesh2_kg.3__3263__AT2G16800.1 Length=1273 Score = 1893 bits (1025), Expect = 0.0 Identities = 1191/1269 (94%), Gaps = 20/1269 (2%) Strand=Plus/Plus Query 69 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCTCCTTCTTCTCACTCAATTG 128 |||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||| Sbjct 21 AAAGAGAAGTAGACGCCGCCATGGATAGGCTTTTGCAACCACCGTCTTCTCGCACAATTG 80 Query 129 CTCCCTCCAAATTC-CAATCAAGACCATCTCCCTTATTACTCCACCGTCTCCACTCAACG 187 |||| |||||| | ||||||||||||||| || |||||||||||||||||||| || Sbjct 81 CTCCATCCAAA-CCACAATCAAGACCATCT-CC--GTTACTCCACCGTCTCCACTCGCCG 136 Query 188 AATCTTAGTACTTTTCCCTCCTCTCGCCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 247 | |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 137 AGTCTTAG---TTTTACCTCCTCTCACCGTCTCGAGTCACGCCGAATCAGCTCCATTTCC 193 Query 248 TGCTTCTTCCGTCAGAATCCATCGCCGGATACATCTCCAGGATTGAATCAGAGTAGTAAT 307 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 194 TGCTTCTTCCGCCAGAATCCATCGCCGGATTCATCTCCAGGATTGAATCAGAGTAGTAAT 253 Query 308 TTCTTGATTGCTTCTTCTCAAACCGATGCG-TCGAAACCTAATCCAGGATTTATCCAACG 366 ||||||||| ||||| || ||||||||| | ||||||||||||||||||||||||||||| Sbjct 254 TTCTTGATTCCTTCTCCTGAAACCGATG-GATCGAAACCTAATCCAGGATTTATCCAACG 312 Query 367 GATCGTGAGCAGTTTTGAGCAACGCAAGACCATAT-CGGCAGGAATGGTTATATTAGTCT 425 ||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||| Sbjct 313 GATCGTGAGCAGTTTTGAGCAGCGCAAGACCAT-TCCGGCTGGAATGGTTATATTAGTCT 371 Query 426 CTGCTATAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCCGCCTGCTTTCGCTAGCTTTC 485 | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 372 CCGCTGTAGCTGCGCTTTTGCTTAATCCCATTCTTGTGCAGCCTGCTTTCGCTAGCTTTC 431 Query 486 AAACGGCTACTAATTCTGGTGGAGCTGCTGTGGTTGGTGGAAAACTCCTCAGGACTGAAG 545 ||||||| |||||||||||||||||||| | ||||||||||| || ||||||||||||| Sbjct 432 AAACGGCAACTAATTCTGGTGGAGCTGC--T-GTTGGTGGAAAGCTTCTCAGGACTGAAG 488 Query 546 TATTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGACCTG 605 || |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 489 TACTGACAAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTACACACGTTATCTGGGCCAG 548 Query 606 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCGG 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 549 ATCACCTTGCTGCTTTGGCTCCACTTTCGATTGGACGGACGAGAATGGAGAGTGCTGCAG 608 Query 666 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAGCTCATCTTTGGTTTATTGTTTC 725 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 609 TTGGAGCTCTTTGGGGATGTGGTCATGACGCTGGTCAACTTATCTTTGGTTTATTGTTTC 668 Query 726 TGCTTCTAAAAGATAGGCTCCACATTGAAGTTATAAGAACTTGGGGTACAAGAGTTGTTG 785 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 669 TGCTTCTAAAAGATAGGCTTCATATTGAAGTTATAAGAACTTGGGGTACAAGAGTCGTTG 728 Query 786 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATCAAAGAAGCTTCTGAGATGCCGGAAC 845 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 729 GTTTGACTCTCCTTGTGATTGGTGCTATGGGAATTAAAGAAGCTTCTGAGATTCCGGAAC 788 Query 846 CATGTGTTGTTACTTTGGAGAATGGGGAAACAGATGAGAAAAGCTTAAAGAAGAAAAAGA 905 ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 789 CATGTGTTGTTACCTTGGAGAATGGAGAAACAGATGAGAAAAGCTCAAAGAAGAAAAAGA 848 Query 906 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCATGGCCTGCAACCGGATGCTCTGATGA 965 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 849 TAGGGTTTGCGACATTTGCGACTGGGATTGTTCACGGACTTCAACCGGATGCTCTGATGA 908 Query 966 TGGTATTGCCTGCATTGGCTCTTCCTTCTCGGATAGCCGGTGCTTCGTTTCTCATCATGT 1025 |||||||||||||| | ||||||||||||||| |||| |||||||| ||||||||||||| Sbjct 909 TGGTATTGCCTGCACTCGCTCTTCCTTCTCGGTTAGCTGGTGCTTCATTTCTCATCATGT 968 Query 1026 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTTTTTATTGGGTCGTGTAGCG 1085 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 969 TCTTGATTGGGACGGTGATTGCGATGGGAAGCTACACAGTGTTTATCGGGTCATGTAGCG 1028 Query 1086 AAGCGTTGAAAGAGAAAGTTCCTAGGATCACTGAGAAACTAACGTGGGCATCTTCTCTTG 1145 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1029 AAGCGTTGAAAGAGAAGGTTCCTAGGATCACAGAGAAACTAACGTGGGCATCTTCTCTTG 1088 Query 1146 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 TGGCCATTGGACTTGGATTGGCAATTATTGTCAGCCAGTTCTTTGGATTCAGCCTGTATT 1148 Query 1206 GAAGA-AAACATCGTCAAGTCTTTGTAGCTCTCTCTGTAGGATAAGATTTTTTGCATGTA 1264 || || |||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 1149 GA-GACAAACATCGTCAAGTCTTTGTAGCTCTCT--GTAGGATAAGATTTTT-GCCTGTA 1204 Query 1265 CCAACAAAATTTGTATCTTTGCTTCAGAATCTTTTTCTTCAATCAAATACAAGTTTGAGT 1324 ||||||||||||||||| |||||||| |||||||| |||| |||||||| |||||||||| Sbjct 1205 CCAACAAAATTTGTATCCTTGCTTCATAATCTTTTCCTTCCATCAAATAGAAGTTTGAGT 1264 Query 1325 TTGGCTCCC 1333 ||||||||| Sbjct 1265 TTGGCTCCC 1273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51809044203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5